EWM28556.1, cds2064 (CDS) Nannochloropsis gaditana

Overview
NameEWM28556.1
Unique Namecds2064
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:824551..825045 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28556.1
ProductRibosomal protein L49/IMG2
Orig transcript idgnl|cribi|Naga_100009g90.599.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:824551..825045 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR007740Ribosomal_L49/IMG2
Homology
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|585110974|gb|EWM28556.1| (Ribosomal protein L49/IMG2 [Nannochloropsis gaditana])

HSP 1 Score: 333.954 bits (855), Expect = 5.348e-116
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:    1 MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
            MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF
Sbjct:    1 MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164          
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|301108337|ref|XP_002903250.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097622|gb|EEY55674.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 118.627 bits (296), Expect = 4.168e-31
Identity = 70/159 (44.03%), Postives = 95/159 (59.75%), Query Frame = 0
Query:    7 LLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
            ++A      R  SNR  +R    +TR+   +R  + Q   E   P LKY PTY P +V  NGWS  P+      P + LPF V+RT  G  LPVY D R GRT+++T++R+  GD +E+R EMSKVC  +EV +R G RLEV G + + +R+WL GLGF
Sbjct:    6 VIASVNAVERVASNRQIRR----KTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLSGLPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|695390915|ref|XP_009519864.1| (hypothetical protein PHYSODRAFT_252435 [Phytophthora sojae] >gi|348684761|gb|EGZ24576.1| hypothetical protein PHYSODRAFT_252435 [Phytophthora sojae])

HSP 1 Score: 116.701 bits (291), Expect = 2.698e-30
Identity = 70/159 (44.03%), Postives = 94/159 (59.12%), Query Frame = 0
Query:    7 LLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
            ++A      R  SNR  +R    + R+   +R  + Q   E   P LKY PTY P +V  NGWS  P+      P   LPFQV+RT  G  LPVY D R GRT+++T++R+  GD +E+R EMSKVC  +EV +R G RLEV G + + +R+WL GLGF
Sbjct:    6 VIASVNAVERVASNRQIRR----KARHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLPGLPFQVKRTAVGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVVVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|301108153|ref|XP_002903158.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097530|gb|EEY55582.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 115.931 bits (289), Expect = 5.008e-30
Identity = 69/159 (43.40%), Postives = 94/159 (59.12%), Query Frame = 0
Query:    7 LLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
            ++A      R  SNR  +R    +TR+   +R  + Q   E   P LKY PTY P +V  NGWS  P+      P + LPF V+RT  G  LPVY D R GRT+++T++R+  GD + +R EMSKVC  +EV +R G RLEV G + + +R+WL GLGF
Sbjct:    6 VIASVNAVERVASNRQIRR----KTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLSGLPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQGLRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|675168905|ref|XP_008893337.1| (hypothetical protein PPTG_01705 [Phytophthora parasitica INRA-310] >gi|566022169|gb|ETI45080.1| hypothetical protein F443_10260 [Phytophthora parasitica P1569] >gi|567959484|gb|ETK85055.1| hypothetical protein L915_10035 [Phytophthora parasitica] >gi|567988196|gb|ETL38477.1| hypothetical protein L916_09942 [Phytophthora parasitica] >gi|568017420|gb|ETL91597.1| hypothetical protein L917_09865 [Phytophthora parasitica] >gi|568047823|gb|ETM44891.1| hypothetical protein L914_09916 [Phytophthora parasitica] >gi|568106926|gb|ETN21556.1| hypothetical protein PPTG_01705 [Phytophthora parasitica INRA-310] >gi|570325795|gb|ETO73743.1| hypothetical protein F444_10359 [Phytophthora parasitica P1976] >gi|570949640|gb|ETP14897.1| hypothetical protein F441_10197 [Phytophthora parasitica CJ01A1] >gi|570983067|gb|ETP42965.1| hypothetical protein F442_10164 [Phytophthora parasitica P10297])

HSP 1 Score: 115.931 bits (289), Expect = 5.893e-30
Identity = 69/150 (46.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query:   16 RKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
            R  SNR  +R    +TR+   +R  + Q   E   P LKY PTY P +V  NGWS  P+      P   LPF V+RT  G  LPVY D R GRT+++T++R+  GD +E+R EMSKVC  +EV +R G RLEV G + + +R+WL GLGF
Sbjct:   15 RVASNRQIRR----KTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLPGLPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|970636047|gb|KUF80785.1| (hypothetical protein AM587_10014489 [Phytophthora nicotianae] >gi|970652086|gb|KUF90810.1| hypothetical protein AM587_10013837 [Phytophthora nicotianae])

HSP 1 Score: 117.472 bits (293), Expect = 2.532e-29
Identity = 69/150 (46.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query:   16 RKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
            R  SNR  +R    +TR+   +R  + Q   E   P LKY PTY P +V  NGWS  P+      P   LPF V+RT  G  LPVY D R GRT+++T++R+  GD +E+R EMSKVC  +EV +R G RLEV G + + +R+WL GLGF
Sbjct:  135 RVASNRQIRR----KTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLPGLPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 274          
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|325190032|emb|CCA24515.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 108.227 bits (269), Expect = 4.923e-27
Identity = 68/153 (44.44%), Postives = 89/153 (58.17%), Query Frame = 0
Query:   16 RKHSNRAKKRIFGSRTRYEDVIRPARE----QAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
            R HSNR  +R    +TR+   I+        +   E P PLKY PTY P  V  NGWS  P+      P   +PF+V+RT KG  LPVY D R GRT+++T++R+  G   E++ EMSKVC  ++V  R G RLEV G +   LR+WL GLGF
Sbjct:   14 RVHSNRQIRR----KTRHPAFIKFKERTYPLKVEKEVP-PLKYEPTYIPENVSFNGWSPAPEN-----PLPGIPFKVKRTAKGLQLPVYRDYRNGRTRVLTILRRYDGHEGELQSEMSKVCGGKDVIARPG-RLEVVGDHLMDLRKWLTGLGF 155          
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|698814168|ref|XP_009840113.1| (hypothetical protein H257_14079 [Aphanomyces astaci] >gi|574104874|gb|ETV70401.1| hypothetical protein H257_14079 [Aphanomyces astaci])

HSP 1 Score: 108.227 bits (269), Expect = 6.862e-27
Identity = 65/158 (41.14%), Postives = 84/158 (53.16%), Query Frame = 0
Query:    7 LLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
             +  F   LR  SNR   R          + R   E        PLK+ PTY P +V  NGWS    PA    P   +PF V+RT  G  LPVY D R GRT++IT+VR+  GD  E++ E+S VC  + V  R G RLEV G Y+A+++Q+  GLGF
Sbjct:    8 FVVGFAAPLRVASNRQINRKLKHPATLRKIARKEAENPVELVLPPLKFQPTYVPEKVSFNGWS----PAREEGPLEGIPFTVKRTATGLQLPVYRDYRNGRTRIITIVRRYHGDEAELQNELSIVCQGKTVVSRPG-RLEVVGDYSAEIKQYFTGLGF 160          
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|673051349|ref|XP_008879635.1| (hypothetical protein H310_13778 [Aphanomyces invadans] >gi|574464664|gb|ETV91709.1| hypothetical protein H310_13778 [Aphanomyces invadans])

HSP 1 Score: 106.686 bits (265), Expect = 2.460e-26
Identity = 65/150 (43.33%), Postives = 80/150 (53.33%), Query Frame = 0
Query:   15 LRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
            LR  SNR   R          + R   E        PLKY PTY P +V  NGWS    PA    P   LPF V+RT  G  LPVY D R GRT++IT+VR+  GD   ++ E+S VC  + V  R G RLEV G Y+A ++Q+  GLGF
Sbjct:   16 LRVASNRQINRKLKHPATLRKIARKEAENPVECVLPPLKYQPTYVPEKVSFNGWS----PARAEGPLEGLPFHVKRTATGLQLPVYRDYRNGRTRVITIVRRFHGDEAALQQELSTVCQGKAVVSRPG-RLEVVGDYSAAIKQYFTGLGF 160          
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|1173956278|gb|OQS03100.1| (hypothetical protein THRCLA_04593 [Thraustotheca clavata])

HSP 1 Score: 106.301 bits (264), Expect = 3.437e-26
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 0
Query:   40 AREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
            AR+ AA E    LKY P+Y P +V  NGWS    PA    P   +PF V+RT  G  LPVY D R GRT++IT+VR+  G+ +E+R E+S VC    V  R G RLEV G Y+ +++Q+L GLGF
Sbjct:   35 ARQPAAPEVVRTLKYEPSYVPEKVSFNGWS----PARAEGPLEGVPFSVKRTSTGLQLPVYRDYRNGRTRIITIVRRYDGNEKELRDELSTVCDGSPVISRPG-RLEVVGDYSTKIKQYLTGLGF 154          
The following BLAST results are available for this feature:
BLAST of EWM28556.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110974|gb|EWM28556.1|5.348e-116100.00Ribosomal protein L49/IMG2 [Nannochloropsis gadita... [more]
gi|301108337|ref|XP_002903250.1|4.168e-3144.03conserved hypothetical protein [Phytophthora infes... [more]
gi|695390915|ref|XP_009519864.1|2.698e-3044.03hypothetical protein PHYSODRAFT_252435 [Phytophtho... [more]
gi|301108153|ref|XP_002903158.1|5.008e-3043.40conserved hypothetical protein [Phytophthora infes... [more]
gi|675168905|ref|XP_008893337.1|5.893e-3046.00hypothetical protein PPTG_01705 [Phytophthora para... [more]
gi|970636047|gb|KUF80785.1|2.532e-2946.00hypothetical protein AM587_10014489 [Phytophthora ... [more]
gi|325190032|emb|CCA24515.1|4.923e-2744.44conserved hypothetical protein [Albugo laibachii N... [more]
gi|698814168|ref|XP_009840113.1|6.862e-2741.14hypothetical protein H257_14079 [Aphanomyces astac... [more]
gi|673051349|ref|XP_008879635.1|2.460e-2643.33hypothetical protein H310_13778 [Aphanomyces invad... [more]
gi|1173956278|gb|OQS03100.1|3.437e-2648.00hypothetical protein THRCLA_04593 [Thraustotheca c... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2072rna2072Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications