EWM28556.1, cds2064 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|585110974|gb|EWM28556.1| (Ribosomal protein L49/IMG2 [Nannochloropsis gaditana]) HSP 1 Score: 333.954 bits (855), Expect = 5.348e-116 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF
Sbjct: 1 MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|301108337|ref|XP_002903250.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097622|gb|EEY55674.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 118.627 bits (296), Expect = 4.168e-31 Identity = 70/159 (44.03%), Postives = 95/159 (59.75%), Query Frame = 0
Query: 7 LLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
++A R SNR +R +TR+ +R + Q E P LKY PTY P +V NGWS P+ P + LPF V+RT G LPVY D R GRT+++T++R+ GD +E+R EMSKVC +EV +R G RLEV G + + +R+WL GLGF
Sbjct: 6 VIASVNAVERVASNRQIRR----KTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLSGLPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|695390915|ref|XP_009519864.1| (hypothetical protein PHYSODRAFT_252435 [Phytophthora sojae] >gi|348684761|gb|EGZ24576.1| hypothetical protein PHYSODRAFT_252435 [Phytophthora sojae]) HSP 1 Score: 116.701 bits (291), Expect = 2.698e-30 Identity = 70/159 (44.03%), Postives = 94/159 (59.12%), Query Frame = 0
Query: 7 LLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
++A R SNR +R + R+ +R + Q E P LKY PTY P +V NGWS P+ P LPFQV+RT G LPVY D R GRT+++T++R+ GD +E+R EMSKVC +EV +R G RLEV G + + +R+WL GLGF
Sbjct: 6 VIASVNAVERVASNRQIRR----KARHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLPGLPFQVKRTAVGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVVVRPG-RLEVVGDHASDIRKWLVGLGF 154
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|301108153|ref|XP_002903158.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097530|gb|EEY55582.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 115.931 bits (289), Expect = 5.008e-30 Identity = 69/159 (43.40%), Postives = 94/159 (59.12%), Query Frame = 0
Query: 7 LLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
++A R SNR +R +TR+ +R + Q E P LKY PTY P +V NGWS P+ P + LPF V+RT G LPVY D R GRT+++T++R+ GD + +R EMSKVC +EV +R G RLEV G + + +R+WL GLGF
Sbjct: 6 VIASVNAVERVASNRQIRR----KTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLSGLPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQGLRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|675168905|ref|XP_008893337.1| (hypothetical protein PPTG_01705 [Phytophthora parasitica INRA-310] >gi|566022169|gb|ETI45080.1| hypothetical protein F443_10260 [Phytophthora parasitica P1569] >gi|567959484|gb|ETK85055.1| hypothetical protein L915_10035 [Phytophthora parasitica] >gi|567988196|gb|ETL38477.1| hypothetical protein L916_09942 [Phytophthora parasitica] >gi|568017420|gb|ETL91597.1| hypothetical protein L917_09865 [Phytophthora parasitica] >gi|568047823|gb|ETM44891.1| hypothetical protein L914_09916 [Phytophthora parasitica] >gi|568106926|gb|ETN21556.1| hypothetical protein PPTG_01705 [Phytophthora parasitica INRA-310] >gi|570325795|gb|ETO73743.1| hypothetical protein F444_10359 [Phytophthora parasitica P1976] >gi|570949640|gb|ETP14897.1| hypothetical protein F441_10197 [Phytophthora parasitica CJ01A1] >gi|570983067|gb|ETP42965.1| hypothetical protein F442_10164 [Phytophthora parasitica P10297]) HSP 1 Score: 115.931 bits (289), Expect = 5.893e-30 Identity = 69/150 (46.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query: 16 RKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
R SNR +R +TR+ +R + Q E P LKY PTY P +V NGWS P+ P LPF V+RT G LPVY D R GRT+++T++R+ GD +E+R EMSKVC +EV +R G RLEV G + + +R+WL GLGF
Sbjct: 15 RVASNRQIRR----KTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLPGLPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|970636047|gb|KUF80785.1| (hypothetical protein AM587_10014489 [Phytophthora nicotianae] >gi|970652086|gb|KUF90810.1| hypothetical protein AM587_10013837 [Phytophthora nicotianae]) HSP 1 Score: 117.472 bits (293), Expect = 2.532e-29 Identity = 69/150 (46.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query: 16 RKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAP-LKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
R SNR +R +TR+ +R + Q E P LKY PTY P +V NGWS P+ P LPF V+RT G LPVY D R GRT+++T++R+ GD +E+R EMSKVC +EV +R G RLEV G + + +R+WL GLGF
Sbjct: 135 RVASNRQIRR----KTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEA-----PLPGLPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 274
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|325190032|emb|CCA24515.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 108.227 bits (269), Expect = 4.923e-27 Identity = 68/153 (44.44%), Postives = 89/153 (58.17%), Query Frame = 0
Query: 16 RKHSNRAKKRIFGSRTRYEDVIRPARE----QAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
R HSNR +R +TR+ I+ + E P PLKY PTY P V NGWS P+ P +PF+V+RT KG LPVY D R GRT+++T++R+ G E++ EMSKVC ++V R G RLEV G + LR+WL GLGF
Sbjct: 14 RVHSNRQIRR----KTRHPAFIKFKERTYPLKVEKEVP-PLKYEPTYIPENVSFNGWSPAPEN-----PLPGIPFKVKRTAKGLQLPVYRDYRNGRTRVLTILRRYDGHEGELQSEMSKVCGGKDVIARPG-RLEVVGDHLMDLRKWLTGLGF 155
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|698814168|ref|XP_009840113.1| (hypothetical protein H257_14079 [Aphanomyces astaci] >gi|574104874|gb|ETV70401.1| hypothetical protein H257_14079 [Aphanomyces astaci]) HSP 1 Score: 108.227 bits (269), Expect = 6.862e-27 Identity = 65/158 (41.14%), Postives = 84/158 (53.16%), Query Frame = 0
Query: 7 LLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
+ F LR SNR R + R E PLK+ PTY P +V NGWS PA P +PF V+RT G LPVY D R GRT++IT+VR+ GD E++ E+S VC + V R G RLEV G Y+A+++Q+ GLGF
Sbjct: 8 FVVGFAAPLRVASNRQINRKLKHPATLRKIARKEAENPVELVLPPLKFQPTYVPEKVSFNGWS----PAREEGPLEGIPFTVKRTATGLQLPVYRDYRNGRTRIITIVRRYHGDEAELQNELSIVCQGKTVVSRPG-RLEVVGDYSAEIKQYFTGLGF 160
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|673051349|ref|XP_008879635.1| (hypothetical protein H310_13778 [Aphanomyces invadans] >gi|574464664|gb|ETV91709.1| hypothetical protein H310_13778 [Aphanomyces invadans]) HSP 1 Score: 106.686 bits (265), Expect = 2.460e-26 Identity = 65/150 (43.33%), Postives = 80/150 (53.33%), Query Frame = 0
Query: 15 LRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
LR SNR R + R E PLKY PTY P +V NGWS PA P LPF V+RT G LPVY D R GRT++IT+VR+ GD ++ E+S VC + V R G RLEV G Y+A ++Q+ GLGF
Sbjct: 16 LRVASNRQINRKLKHPATLRKIARKEAENPVECVLPPLKYQPTYVPEKVSFNGWS----PARAEGPLEGLPFHVKRTATGLQLPVYRDYRNGRTRVITIVRRFHGDEAALQQELSTVCQGKAVVSRPG-RLEVVGDYSAAIKQYFTGLGF 160
BLAST of EWM28556.1 vs. NCBI_GenBank
Match: gi|1173956278|gb|OQS03100.1| (hypothetical protein THRCLA_04593 [Thraustotheca clavata]) HSP 1 Score: 106.301 bits (264), Expect = 3.437e-26 Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 0
Query: 40 AREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
AR+ AA E LKY P+Y P +V NGWS PA P +PF V+RT G LPVY D R GRT++IT+VR+ G+ +E+R E+S VC V R G RLEV G Y+ +++Q+L GLGF
Sbjct: 35 ARQPAAPEVVRTLKYEPSYVPEKVSFNGWS----PARAEGPLEGVPFSVKRTSTGLQLPVYRDYRNGRTRIITIVRRYDGNEKELRDELSTVCDGSPVISRPG-RLEVVGDYSTKIKQYLTGLGF 154 The following BLAST results are available for this feature:
BLAST of EWM28556.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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