|
|
Properties
| Property Name | Value |
|---|
| Product | wd repeat domain phosphoinositide-interacting protein 3 |
| Orig transcript id | gnl|cribi|Naga_100009g91.604.mrna |
| Orig protein id | gnl|cribi|Naga_100009g91.604 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:822191..823870 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2071 ID=rna2071|Name=rna2071|organism=Nannochloropsis gaditana|type=mRNA|length=2168bp
CGTCGCTGTTCCCAGCGCAAGCGCTCACACACTGATCTCCTTATACCTCG
CACACAGATTACACGGCCTGAGTTTTACGTTACTCGGAAAAATGAGCGAC
AAATTGACCCCGGATATGGTGGGGAAAATGAAGGTTGCTGAGTTGAAGGC
ACAACTAACAAATCTTGGCTTAGATACCAGTGGCTTGAAAGCGGCTCTCG
CAGCCCGCCTCCTCGAGCACATCACAAAAGCAGATGATGACGGCGAAGAG
AAGGAGAAGAAAGCGGAGGAGGTGAAGGAGGAGAAGGAGGAGGAGGAGAG
GAAGGAGGATGAGGCAGCGACACCACCACCAGAGCCTCCCACGCAGACGG
AAGAGGAATCTCATCCAGGTGAAAAGCGTAAAGAGCCTGAGACAGTTCCA
GCCGAGCCCAGCGCTGAAGGCGGTGCTGAAGCCGGGGAGGACACGGAGAC
TCACAAGAAAGCACGCGTGGAGGAGACAAACGGCACAGAGATGAAAACAG
AGGAGGTCTCGGCGTCGGAACCAGCAGCGGCACCAGTCTCCACGAGTCGT
TGGGGGGCGGACAACCCGGTGGCCACCGCAGCCACCGACCTCCAGCAAGG
AGGATCCGCAGGATTTGTGTTGGACAGTAAACCCGTGGCGGCGACACCGG
CCCCCGTAAAGAAGGCGAAAGGCGCGGAGATCTACGTGGGGAACCTGGAT
CCTTACACAACGGAGGAAGATTTGCGGGCGCTCTTCTCGCAGTTGGGGGA
GGTAACTGAAATCCGGCTGAAGATGCGTCAGCAGCAGGGCGGCCGAAATT
TTTCATTTGTCCGGTTTTCCGACAAGGAGGCAGCGGCCCGGGCGGTGGCA
GAGTTGGACCGACGACTGGAACTTCACGGACGCGTGCTAACCATCTCGTA
CACAGCCGTGAACGACAAACTCCGTTTCTCGAACGTGCCCACGCACTGGC
GGGCCGATCAGATCGAGGAGGCTTTGGTGGCCCAAGGCTGCGACGGTGTG
TACGAGATAGAAATGCCGCTGGCGGGGGACGGGATCAGCAACCAGGGCTT
CTGCGTGATCGAATTCGACAATCACCCGGCGGCCCAGCGCGCCTACCGCC
TGACCACCACGGCTGCGAACGGCGTGACCATGGACGGGAGGCGACTGACG
GTGGAGTGGCCCGATGGCGTGGATCGGTCCACACAACAGCAGCAAATGCA
GCGTGCGGGCTTGAGCAACCAGCTCGACGACGCCATGCAGGTCAAGAACC
TGTACGTAGGGGGGGTGCCCGTGGACGTGACGGAGCAAGAAATGCGCGCG
GTCTTCTCGGTGTACGGCGAGATCGACAACGTGCGGCTTGCAGGCCAAGC
TCCCAACGCCCGTCGGCCTGATTTTGCTTTCATCAATTACCGGGACCGGG
ACTCCGCGATCCGCGCGCTAGAAGCGCTGCGTGTGGAACCCAAAGCGCAA
ATTCGGGGACACGCTTTGGAGGTGGAAATGGCGCGCCCTCCCAAGAATTC
GATGATGCAGCAACAGCGGAGCATGTATGGACAGGCTGCCGTTTACGCTC
AGGGGTTGCAACAAGCGCAATATGCCCAAGGGACCGGGTACACGGCGGGG
GGAAGCTACTACCAACAGACACAAGGTGGGGGGTGGCAGCAGCAGCCGAC
GGAGGCGGCGTACGGGATTTATGCGCAACAGCTGGCGGCTCAACAAGGAT
GGACTGGACAACAAGGGTACAGTACCACGGGCGTGCAGCAGCCTTTCGCC
GCTTTTGGGCAACAGCAGCAGCAGCAGTGGACGGGGACGGGTCAGCAACA
GACGTGGAACCAAACAGGTACAGGCCAGCAAAGCTACGGTCGATTTTAAT
GAGACGGAGGAAAGGTCATTGGAGCCCTGATCCTGCTTTCAAGCGGCTAG
ATCGCTCTACACCCAACAACCCAGACGACACCACAATCGCAAAGAGGTGG
ACGCAGGCCGCTGGCAGACTTGGAAGGCCTTGCGTCGACGCATATTCCAA
TGAACGTCAGAGGGACTTACCCACATTGAAGAAATAGGCTTACAAATAAA
CCAACCCCTTAAGGCCTTTGGAGATAGGGTTTGCCATGTTGTAACGCAAA
TCGAAATGCAAAGAAAGGCGAGGGCAGCGATGGATCCCGAAGAACAGTGG
GACTGCGCTTGGACTTGA back to topprotein sequence of rna2071 >rna2071-protein ID=rna2071-protein|Name=rna2071|organism=Nannochloropsis gaditana|type=polypeptide|length=429bp
MSSMSLAQDQRNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRIF
PNGGIGIVEMLFRTNLVALVGGGRNPRFPPNKVMIWDDHQNRCVGELSFR
SEVKAVKLRRDRVVVVLTTKIYVYRFVDLHLQDQMSTLPNPRGLVALSPD
NNNTVLACPGINKGSVRVELYDSRKSTLIPAHESELAQMALNLDGTRLAT
ASDKGTLVRVFDTYSGELLQELRRGMDRAEIYSLAFNASSTFVACSSCKG
TVHIFAVGAEGGNGSGEGGGGGGGKQGTRSDSGAWSSSAAMGGTGGAGAG
GEEVKNATSGLSFMRSLLPQVTPRYFASEWSFAQVRGLEARTVVAFGVRD
HTLICVGADGTYLVSNFASGGEAERVSYKKLVSHQSLHLHNPKRPSLPEI
AMGDVVGMPTPFKLCDRTLTSLVLIGMQN back to topmRNA from alignment at CM002458.1:822191..823870- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2071 ID=rna2071|Name=rna2071|organism=Nannochloropsis gaditana|type=mRNA|length=1680bp|location=Sequence derived from alignment at CM002458.1:822191..823870- (Nannochloropsis gaditana)
ATGTCGTCCATGTCACTGGCGCAAGATCAGCGGAATGAGCTCCTCTTTGT
AGGGTTCAACCAAGATTACGGCTGCTTCGCATGCGGCACGGACAATGGAT
TCAGGTATGTATGTATGGATGCCAGGGCATCAAAAAATCGGTGAAATTGA
TTTGTTTAACATTCATGAGATGTCAACAATATGCCCTTTTTGAGGTGATG
TTCCCAGTGGAAGCGGCATTGAATCGAAGAAAAGAAGGGAATCCCGAAGC
GTTCATATGCCTATGGGCCGCGCATCCTCCTTTTTTTGCTACATGTCTTG
ATCTGAAACAAACTTTGCTTGTCTGCACTTGGAGGAAACGTGTGAGAGAA
TCTTGGTCGGTCGCATGCGAGAACTCACTCGCTATCCTTCCTACTCCGCT
GTCTGGTAGGATCTACAATGTGGACCCCTTCAGGGAGACTTTCCGACGCA
TTTTTCCCAACGGTGGAATTGGAATCGTAGAGATGCTCTTCAGAACCAAT
TTGGTGGCGCTAGTGGGCGGCGGACGCAACCCTCGTTTTCCCCCGAACAA
GGTGATGATATGGGACGACCATCAGAACCGGTGCGTGGGCGAGCTGAGTT
TCCGGAGCGAGGTCAAGGCCGTGAAGCTCCGAAGGGACAGGGTCGTGGTC
GTGCTGACCACGAAAATTTACGTCTATCGATTCGTGGATCTGCACCTGCA
AGACCAGATGAGCACGCTCCCAAACCCGCGGGGTCTCGTCGCCCTGAGCC
CCGATAACAACAACACGGTGTTGGCCTGCCCCGGCATCAACAAAGGCTCT
GTCCGCGTCGAGCTGTACGACAGCAGGAAGTCCACGCTCATCCCAGCGCA
CGAATCGGAGCTGGCGCAGATGGCCCTCAACCTGGACGGGACGCGCCTCG
CCACCGCCTCGGACAAGGGGACTTTGGTCCGAGTCTTCGACACCTACTCA
GGTGAGCTCCTCCAGGAGTTGCGGCGAGGAATGGACAGGGCAGAGATTTA
CTCGTTGGCCTTCAATGCGTCCTCCACATTCGTGGCTTGCTCTTCCTGCA
AGGGCACCGTGCATATTTTTGCCGTCGGCGCCGAGGGCGGGAACGGCTCC
GGAGAGGGAGGGGGTGGGGGAGGGGGAAAACAAGGGACTCGTTCAGACAG
TGGGGCGTGGTCGTCGTCAGCAGCGATGGGAGGCACGGGAGGGGCGGGGG
CTGGAGGGGAAGAGGTGAAGAATGCGACCTCAGGCTTATCGTTCATGCGG
AGCCTGCTCCCGCAGGTCACCCCCAGATACTTCGCTTCGGAGTGGAGTTT
TGCGCAGGTTCGAGGCCTGGAAGCACGTACTGTTGTGGCCTTTGGTGTAC
GAGATCATACATTGATTTGCGTGGGCGCGGACGGCACCTACTTGGTCTCA
AACTTTGCATCAGGAGGGGAGGCGGAGCGCGTGTCTTACAAAAAGCTTGT
CAGGTCGGCGGAGGAGGAGGACGAGGATCACTTTGCCACGGCCCCGAGCG
CTGGATCCCTGCATCCCACCCCGACGCACGTCACCCAGCCATCAATCCCT
CCACCTGCACAATCCCAAGCGACCCTCCCTTCCAGAGATCGCAATGGGAG
ACGTGGTGGGGATGCCGACTCCCTTCAAGCTGTGTGATAGGACTTTGACC
AGCCTTGTCTTAATTGGTATGCAAAATTGA back to topCoding sequence (CDS) from alignment at CM002458.1:822191..823870- >rna2071 ID=rna2071|Name=rna2071|organism=Nannochloropsis gaditana|type=CDS|length=3870bp|location=Sequence derived from alignment at CM002458.1:822191..823870- (Nannochloropsis gaditana)
CCATCAATCCCTCCACCTGCACAATCCCAAGCGACCCTCCCTTCCAGAGA
TCGCAATGGGAGACGTGGTGGGGATGCCGACTCCCTTCAAGCTGTGTGAT
AGGACTTTGACCAGCCTTGTCTTAATTGGTATGCAAAATTGAGATCTACA
ATGTGGACCCCTTCAGGGAGACTTTCCGACGCATTTTTCCCAACGGTGGA
ATTGGAATCGTAGAGATGCTCTTCAGAACCAATTTGGTGGCGCTAGTGGG
CGGCGGACGCAACCCTCGTTTTCCCCCGAACAAGGTGATGATATGGGACG
ACCATCAGAACCGGTGCGTGGGCGAGCTGAGTTTCCGGAGCGAGGTCAAG
GCCGTGAAGCTCCGAAGGGACAGGGTCGTGGTCGTGCTGACCACGAAAAT
TTACGTCTATCGATTCGTGGATCTGCACCTGCAAGACCAGATGAGCACGC
TCCCAAACCCGCGGGGTCTCGTCGCCCTGAGCCCCGATAACAACAACACG
GTGTTGGCCTGCCCCGGCATCAACAAAGGCTCTGTCCGCGTCGAGCTGTA
CGACAGCAGGAAGTCCACGCTCATCCCAGCGCACGAATCGGAGCTGGCGC
AGATGGCCCTCAACCTGGACGGGACGCGCCTCGCCACCGCCTCGGACAAG
GGGACTTTGGTCCGAGTCTTCGACACCTACTCAGGTGAGCTCCTCCAGGA
GTTGCGGCGAGGAATGGACAGGGCAGAGATTTACTCGTTGGCCTTCAATG
CGTCCTCCACATTCGTGGCTTGCTCTTCCTGCAAGGGCACCGTGCATATT
TTTGCCGTCGGCGCCGAGGGCGGGAACGGCTCCGGAGAGGGAGGGGGTGG
GGGAGGGGGAAAACAAGGGACTCGTTCAGACAGTGGGGCGTGGTCGTCGT
CAGCAGCGATGGGAGGCACGGGAGGGGCGGGGGCTGGAGGGGAAGAGGTG
AAGAATGCGACCTCAGGCTTATCGTTCATGCGGAGCCTGCTCCCGCAGGT
CACCCCCAGATACTTCGCTTCGGAGTGGAGTTTTGCGCAGGTTCGAGGCC
TGGAAGCACGTACTGTTGTGGCCTTTGGTGTACGAGATCATACATTGATT
TGCGTGGGCGCGGACGGCACCTACTTGGTCTCAAACTTTGCATCAGGAGG
GGAGGCGGAGCGCGTGTCTTACAAAAAGCTTGTCAGATGTCGTCCATGTC
ACTGGCGCAAGATCAGCGGAATGAGCTCCTCTTTGTAGGGTTCAACCAAG
ATTACGGCTGCTTCGCATGCGGCACGGACAATGGATTCAGCCATCAATCC
CTCCACCTGCACAATCCCAAGCGACCCTCCCTTCCAGAGATCGCAATGGG
AGACGTGGTGGGGATGCCGACTCCCTTCAAGCTGTGTGATAGGACTTTGA
CCAGCCTTGTCTTAATTGGTATGCAAAATTGAGATCTACAATGTGGACCC
CTTCAGGGAGACTTTCCGACGCATTTTTCCCAACGGTGGAATTGGAATCG
TAGAGATGCTCTTCAGAACCAATTTGGTGGCGCTAGTGGGCGGCGGACGC
AACCCTCGTTTTCCCCCGAACAAGGTGATGATATGGGACGACCATCAGAA
CCGGTGCGTGGGCGAGCTGAGTTTCCGGAGCGAGGTCAAGGCCGTGAAGC
TCCGAAGGGACAGGGTCGTGGTCGTGCTGACCACGAAAATTTACGTCTAT
CGATTCGTGGATCTGCACCTGCAAGACCAGATGAGCACGCTCCCAAACCC
GCGGGGTCTCGTCGCCCTGAGCCCCGATAACAACAACACGGTGTTGGCCT
GCCCCGGCATCAACAAAGGCTCTGTCCGCGTCGAGCTGTACGACAGCAGG
AAGTCCACGCTCATCCCAGCGCACGAATCGGAGCTGGCGCAGATGGCCCT
CAACCTGGACGGGACGCGCCTCGCCACCGCCTCGGACAAGGGGACTTTGG
TCCGAGTCTTCGACACCTACTCAGGTGAGCTCCTCCAGGAGTTGCGGCGA
GGAATGGACAGGGCAGAGATTTACTCGTTGGCCTTCAATGCGTCCTCCAC
ATTCGTGGCTTGCTCTTCCTGCAAGGGCACCGTGCATATTTTTGCCGTCG
GCGCCGAGGGCGGGAACGGCTCCGGAGAGGGAGGGGGTGGGGGAGGGGGA
AAACAAGGGACTCGTTCAGACAGTGGGGCGTGGTCGTCGTCAGCAGCGAT
GGGAGGCACGGGAGGGGCGGGGGCTGGAGGGGAAGAGGTGAAGAATGCGA
CCTCAGGCTTATCGTTCATGCGGAGCCTGCTCCCGCAGGTCACCCCCAGA
TACTTCGCTTCGGAGTGGAGTTTTGCGCAGGTTCGAGGCCTGGAAGCACG
TACTGTTGTGGCCTTTGGTGTACGAGATCATACATTGATTTGCGTGGGCG
CGGACGGCACCTACTTGGTCTCAAACTTTGCATCAGGAGGGGAGGCGGAG
CGCGTGTCTTACAAAAAGCTTGTCAGATGTCGTCCATGTCACTGGCGCAA
GATCAGCGGAATGAGCTCCTCTTTGTAGGGTTCAACCAAGATTACGGCTG
CTTCGCATGCGGCACGGACAATGGATTCAGCCATCAATCCCTCCACCTGC
ACAATCCCAAGCGACCCTCCCTTCCAGAGATCGCAATGGGAGACGTGGTG
GGGATGCCGACTCCCTTCAAGCTGTGTGATAGGACTTTGACCAGCCTTGT
CTTAATTGGTATGCAAAATTGAGATCTACAATGTGGACCCCTTCAGGGAG
ACTTTCCGACGCATTTTTCCCAACGGTGGAATTGGAATCGTAGAGATGCT
CTTCAGAACCAATTTGGTGGCGCTAGTGGGCGGCGGACGCAACCCTCGTT
TTCCCCCGAACAAGGTGATGATATGGGACGACCATCAGAACCGGTGCGTG
GGCGAGCTGAGTTTCCGGAGCGAGGTCAAGGCCGTGAAGCTCCGAAGGGA
CAGGGTCGTGGTCGTGCTGACCACGAAAATTTACGTCTATCGATTCGTGG
ATCTGCACCTGCAAGACCAGATGAGCACGCTCCCAAACCCGCGGGGTCTC
GTCGCCCTGAGCCCCGATAACAACAACACGGTGTTGGCCTGCCCCGGCAT
CAACAAAGGCTCTGTCCGCGTCGAGCTGTACGACAGCAGGAAGTCCACGC
TCATCCCAGCGCACGAATCGGAGCTGGCGCAGATGGCCCTCAACCTGGAC
GGGACGCGCCTCGCCACCGCCTCGGACAAGGGGACTTTGGTCCGAGTCTT
CGACACCTACTCAGGTGAGCTCCTCCAGGAGTTGCGGCGAGGAATGGACA
GGGCAGAGATTTACTCGTTGGCCTTCAATGCGTCCTCCACATTCGTGGCT
TGCTCTTCCTGCAAGGGCACCGTGCATATTTTTGCCGTCGGCGCCGAGGG
CGGGAACGGCTCCGGAGAGGGAGGGGGTGGGGGAGGGGGAAAACAAGGGA
CTCGTTCAGACAGTGGGGCGTGGTCGTCGTCAGCAGCGATGGGAGGCACG
GGAGGGGCGGGGGCTGGAGGGGAAGAGGTGAAGAATGCGACCTCAGGCTT
ATCGTTCATGCGGAGCCTGCTCCCGCAGGTCACCCCCAGATACTTCGCTT
CGGAGTGGAGTTTTGCGCAGGTTCGAGGCCTGGAAGCACGTACTGTTGTG
GCCTTTGGTGTACGAGATCATACATTGATTTGCGTGGGCGCGGACGGCAC
CTACTTGGTCTCAAACTTTGCATCAGGAGGGGAGGCGGAGCGCGTGTCTT
ACAAAAAGCTTGTCAGATGTCGTCCATGTCACTGGCGCAAGATCAGCGGA
ATGAGCTCCTCTTTGTAGGGTTCAACCAAGATTACGGCTGCTTCGCATGC
GGCACGGACAATGGATTCAG back to top
|