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Properties
| Property Name | Value |
|---|
| Product | DNA-binding SAP |
| Orig transcript id | gnl|cribi|Naga_100009g92.572.mrna |
| Orig protein id | gnl|cribi|Naga_100009g92.572 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:819577..821860 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2070 ID=rna2070|Name=rna2070|organism=Nannochloropsis gaditana|type=mRNA|length=3047bp
GAAGCCGCTTGGTCGAAATGAGGTTGGCCGCGTCCTGGGAACAAGCGCTG
ACTCAAAACACGACAAGCACGCTTTCAGGAGAAGAGGCAGATTTCTTCCT
GTTGTCGCTCATTTTTCCCTCCGTCCACCACCCGGCAGATCAACATCTCG
AACATCCGATTACACGGTATCGTGATAGCTGCGGCACGGCATTCATGGGA
AATGTCGGCCACGTGCGGCGGGCGGCTAGCGGTCCGGGTCGGGGCCGGGG
GCACGCGAGAGCGTGGTGGACTGCAGCAGCGGCGACCTTGGTCATGGGGA
GCACGTGCGAAATAGGAAAGGTTTGGGCTTTTGTCCCAGCACCACTGAGA
CATCTACATGGACCGCAGCCACCATCATTACATCGTCAGATCGCAGCGTC
CGTGAAAGGGGGCCGTGGAGCATGGCCTTTGACAGCAAACGGAGCAAAAG
GGGGGCCTAACTGCCTGGAAACGCGGACGACGCCGAGAATCGATACAATC
AGATGTAGCAGTCTTAGTGGCAGAAGCAGAAGCAGCAGATTGTATGCGGT
GGACGTGGACGAGAGCAAGGCGGAGGACGGGCCTCCGCCCGCTGTCCCCG
CCCCTCCCTCCCCCAGTCAGACGAACCCCATGACGGAGGCCGACCGACTG
CAACTCAAGTCTCAAATGTTCAAGCTTCAGGCCGAAAAGCTACGCCTGGA
GGCGGAAAAGGAACAAATCAAGATGGAAAGAGAAACCCTGCTGAAGAAAC
AGAAGAAGCAGCAAGACACGGACCGCCTAGTCGAAAAGTTGCGGGCGGCG
CAGCCCTCGACGACCGGCGCCGCCTCCGCAGAGGGGGCGGCAGCGGAGTT
GAAAGCCGTAGTCAAGACGTACCTGCGCACCATAGACGCGGATTCCGTCT
CGCGCATCCGAGAATTGAGCGCCGAAGCGGATACGCCAGAGCAGGCTCTG
GCCTACACCAACCTGGCGGACGCCGTGATCAAAGCGATCGAGGAGCTCGA
CGGGCGCCAAGCCAAAGAGATCCGGGAAGAACTCGCTTTCCGCTTCAAGG
ACGAGACCCCTCCTCCTTCCTCCTCAAACGCGCCCTTCGATCAGTTCTCC
CAGGTGGAAGCGGCCATGCGCAACGTATCGAACCCGGGTATGTCCTCCAT
CGACCAGCTCACGCAGGAGATGATGCGGAACAACACCCGGGGCTTCTCCA
CCATCTACGCCATCAACCTCCCCCAGTGGCTCCCCCGGGAGTTCATGCGC
ACGCTCGAGTCCTTCGAGCCCCTCCTGGACGAGGACGTGCGGGCCCTTCG
CACGGAGGTCTTTAAAATGGACACCTTCTTCGTCACCGACGTGGACAAGA
CGCCCCTGGCCGTGGCCTACATGGGCACCCTACGCAAGCCCTCGGAGGAG
GTGTTCAAGGACGTGGAGAGGCGTCTGCAGGACTTGGAGGGCGGACTCAA
AGACCGGGTGCAGCTTTTCCTGTTCGAGAACCCGCGGCCGCAGATGCAAG
AGATGGGGGGGATGATGGGGGGAGGCGGGGACGCGGAGAACCCCGAGGTC
ATGTTCATGGCGGTCTCAACGCGGGTCAAGCCCTTGCCGGTGGGCGGGGG
GCAGGCCACCCTCTCCCTGCTCTCTCTCGGTGCCACTGCCTTGAACTGCC
TCGTCTATTCCATCTTGACCTTCTACTCCCCGGCGGACATCGTGAACAAG
CTGGGCGAGGCGCCCTTGGCGCGCCTGGATGACGCCCTGCCCGTGGCCGC
GGGTATTCTCGGCATCCAGCTCGCGCACGACCTGGCGCACAACCTGATGG
CTCGGACAAAGGACGTGAAGCTGGGCGTGCCCATCTACATCCCCTCCTTG
CAGGTCGGGACCTTCGGCTCTGTGCTCCGCTTTGTTTCTTTCCCGAAACG
GCGCAAGGACATGTTCGACGTGGCCCTCGCGGGGCCCTTGACGGGGCTGG
CACTCTCTTTCGCGGCCTTCGCCGCGGGGATGGCCATGACCCAAGGTGCA
GCCCCGGAGATAAGCGCCCAGTGGCCCATGCTTCCCGTCGCGCTCTTTCG
CTCCTCGCTCATGTTGTGGCAGGTCGGCCAGGCTCTCTTCAGTGCCGACG
TGGTGAACTTGCCCCTTGTGTCCCAGATCCACGTCCACCCTTTGGCCGTC
ATTGGCGCGCTGGGTCTCCTCACTCAGGCCTTACAGGCGATGCCTATCGG
GCGTTTGGACGGAGGAAGGGCGAGTACCTCGGTTTTTGGACGCAAGGCGG
CCACATTTTTGAGCGCGTCCTTGGTGTTGTACCAGGTGGTGTCAGGGGTC
GTGCTTGGGAACACGCTGCAACTCTTCTGGGGAACGGTGGTCATCATTTT
CCAGAATGCGCAGGAAATGTATGCGCGGGATGAGATCAGCCCAGTAGATA
ACAATCGACGAAACTTGCTCTTGTTGCTCTGGGCGGTGGTGGCTGTCGTG
CTCTTGCCTGGAGTTCCGTGGCGAGATGCAGGTGTGTTTGATGACTTTGG
TGGCTTTATGACGTAGTTTATCGAACGATCGCGGAGGAATAATGAAACAG
GGGAGGAAAGTCGAAGAGAAAGGGTGGACATTTAAGCAGGAAAGAGGTGG
AATGTGGAATGGGGATGAGTCGACACGGGAGGTGACGCAGGGCGGAGCTT
TTTTTTTTTCCAGTCTTTTGATAGAGAGGAGCAATGACAAAGGGAACCAC
CGATTCCGGTAGACAAAATTCTGACCAGAAACAGGGCGATTTGGTCGCAC
ATCAATATTGCCATCCAGGAAATGTCTACATTTTCCTTTTAATCTGCTCC
GGCATGGTTGTCGGGCGGGACGAGTAGTAGCGGAGGACTGGGGAGGAAGG
GCAAAGCGAAGGGCATGTGTTTCATTTAGCATCAGAAATTTTGCCCGCCG
ATCAAGCGAGGTGGGCGAGGAGTGGGGCTGGGCCTGGAGATAAAGCACCC
AGATACCCAAGGCCAAGGGAGGCAGAGCAATCAACAGGAGCGGCACAAAC
ATTTACAGTCAACAAAGAAACATTTGCAAATTATAACACATGGGTCA back to topprotein sequence of rna2070 >rna2070-protein ID=rna2070-protein|Name=rna2070|organism=Nannochloropsis gaditana|type=polypeptide|length=585bp
MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKADDD
GEEKEKKAEEVKEEKEEEERKEDEAATPPPEPPTQTEEESHPGEKRKEPE
TVPAEPSAEGGAEAGEDTETHKKARVEETNGTEMKTEEVSASEPAAAPVS
TSRWGADNPVATAATDLQQGGSAGFVLDSKPVAATPAPVKKAKGAEIYVG
NLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAAR
AVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGC
DGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGR
RLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQE
MRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEP
KAQIRGHALEVEMARPPKNSMMQQQRSMYGQAAVYAQGLQQAQYAQGTGY
TAGGSYYQQTQGGGWQQQPTEAAYGIYAQQLAAQQGWTGQQGYSTTGVQQ
PFAAFGQQQQQQWTGTGQQQTWNQTGTGQQSYGRF back to topmRNA from alignment at CM002458.1:819577..821860- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2070 ID=rna2070|Name=rna2070|organism=Nannochloropsis gaditana|type=mRNA|length=2284bp|location=Sequence derived from alignment at CM002458.1:819577..821860- (Nannochloropsis gaditana)
CGTCGCTGTTCCCAGCGCAAGCGCTCACACACTGATCTCCTTATACCTCG
CACACAGATTACACGGCCTGAGTTTTACGTTACTCGGAAAAATGAGCGAC
AAATTGACCCCGGATATGGTGGGGAAAATGAAGGTAGGTGGCCTCGGGGA
GTTATGATATGCCTGGATACCATCATCCTCGGGGCTGAGAGCGGGAGCAC
CGGGAGTTGTCTCACATATCCCATACGATGATGCAATAACGAACAACAGG
TTGCTGAGTTGAAGGCACAACTAACAAATCTTGGCTTAGATACCAGTGGC
TTGAAAGCGGCTCTCGCAGCCCGCCTCCTCGAGCACATCACAAAAGCAGA
TGATGACGGCGAAGAGAAGGAGAAGAAAGCGGAGGAGGTGAAGGAGGAGA
AGGAGGAGGAGGAGAGGAAGGAGGATGAGGCAGCGACACCACCACCAGAG
CCTCCCACGCAGACGGAAGAGGAATCTCATCCAGGTGAAAAGCGTAAAGA
GCCTGAGACAGTTCCAGCCGAGCCCAGCGCTGAAGGCGGTGCTGAAGCCG
GGGAGGACACGGAGACTCACAAGAAAGCACGCGTGGAGGAGACAAACGGC
ACAGAGATGAAAACAGAGGAGGTCTCGGCGTCGGAACCAGCAGCGGCACC
AGTCTCCACGAGTCGTTGGGGGGCGGACAACCCGGTGGCCACCGCAGCCA
CCGACCTCCAGCAAGGAGGATCCGCAGGATTTGTGTTGGACAGTAAACCC
GTGGCGGCGACACCGGCCCCCGTAAAGAAGGCGAAAGGCGCGGAGATCTA
CGTGGGGAACCTGGATCCTTACACAACGGAGGAAGATTTGCGGGCGCTCT
TCTCGCAGTTGGGGGAGGTAACTGAAATCCGGCTGAAGATGCGTCAGCAG
CAGGGCGGCCGAAATTTTTCATTTGTCCGGTTTTCCGACAAGGAGGCAGC
GGCCCGGGCGGTGGCAGAGTTGGACCGACGACTGGAACTTCACGGACGCG
TGCTAACCATCTCGTACACAGCCGTGAACGACAAACTCCGTTTCTCGAAC
GTGCCCACGCACTGGCGGGCCGATCAGATCGAGGAGGCTTTGGTGGCCCA
AGGCTGCGACGGTGTGTACGAGATAGAAATGCCGCTGGCGGGGGACGGGA
TCAGCAACCAGGGCTTCTGCGTGATCGAATTCGACAATCACCCGGCGGCC
CAGCGCGCCTACCGCCTGACCACCACGGCTGCGAACGGCGTGACCATGGA
CGGGAGGCGACTGACGGTGGAGTGGCCCGATGGCGTGGATCGGTCCACAC
AACAGCAGCAAATGCAGCGTGCGGGCTTGAGCAACCAGCTCGACGACGCC
ATGCAGGTCAAGAACCTGTACGTAGGGGGGGTGCCCGTGGACGTGACGGA
GCAAGAAATGCGCGCGGTCTTCTCGGTGTACGGCGAGATCGACAACGTGC
GGCTTGCAGGCCAAGCTCCCAACGCCCGTCGGCCTGATTTTGCTTTCATC
AATTACCGGGACCGGGACTCCGCGATCCGCGCGCTAGAAGCGCTGCGTGT
GGAACCCAAAGCGCAAATTCGGGGACACGCTTTGGAGGTGGAAATGGCGC
GCCCTCCCAAGAATTCGATGATGCAGCAACAGCGGAGCATGTATGGACAG
GCTGCCGTTTACGCTCAGGGGTTGCAACAAGCGCAATATGCCCAAGGGAC
CGGGTACACGGCGGGGGGAAGCTACTACCAACAGACACAAGGTGGGGGGT
GGCAGCAGCAGCCGACGGAGGCGGCGTACGGGATTTATGCGCAACAGCTG
GCGGCTCAACAAGGATGGACTGGACAACAAGGGTACAGTACCACGGGCGT
GCAGCAGCCTTTCGCCGCTTTTGGGCAACAGCAGCAGCAGCAGTGGACGG
GGACGGGTCAGCAACAGACGTGGAACCAAACAGGTACAGGCCAGCAAAGC
TACGGTCGATTTTAATGAGACGGAGGAAAGGTCATTGGAGCCCTGATCCT
GCTTTCAAGCGGCTAGATCGCTCTACACCCAACAACCCAGACGACACCAC
AATCGCAAAGAGGTGGACGCAGGCCGCTGGCAGACTTGGAAGGCCTTGCG
TCGACGCATATTCCAATGAACGTCAGAGGGACTTACCCACATTGAAGAAA
TAGGCTTACAAATAAACCAACCCCTTAAGGCCTTTGGAGATAGGGTTTGC
CATGTTGTAACGCAAATCGAAATGCAAAGAAAGGCGAGGGCAGCGATGGA
TCCCGAAGAACAGTGGGACTGCGCTTGGACTTGA back to topCoding sequence (CDS) from alignment at CM002458.1:819577..821860- >rna2070 ID=rna2070|Name=rna2070|organism=Nannochloropsis gaditana|type=CDS|length=3516bp|location=Sequence derived from alignment at CM002458.1:819577..821860- (Nannochloropsis gaditana)
GTTGCTGAGTTGAAGGCACAACTAACAAATCTTGGCTTAGATACCAGTGG
CTTGAAAGCGGCTCTCGCAGCCCGCCTCCTCGAGCACATCACAAAAGCAG
ATGATGACGGCGAAGAGAAGGAGAAGAAAGCGGAGGAGGTGAAGGAGGAG
AAGGAGGAGGAGGAGAGGAAGGAGGATGAGGCAGCGACACCACCACCAGA
GCCTCCCACGCAGACGGAAGAGGAATCTCATCCAGGTGAAAAGCGTAAAG
AGCCTGAGACAGTTCCAGCCGAGCCCAGCGCTGAAGGCGGTGCTGAAGCC
GGGGAGGACACGGAGACTCACAAGAAAGCACGCGTGGAGGAGACAAACGG
CACAGAGATGAAAACAGAGGAGGTCTCGGCGTCGGAACCAGCAGCGGCAC
CAGTCTCCACGAGTCGTTGGGGGGCGGACAACCCGGTGGCCACCGCAGCC
ACCGACCTCCAGCAAGGAGGATCCGCAGGATTTGTGTTGGACAGTAAACC
CGTGGCGGCGACACCGGCCCCCGTAAAGAAGGCGAAAGGCGCGGAGATCT
ACGTGGGGAACCTGGATCCTTACACAACGGAGGAAGATTTGCGGGCGCTC
TTCTCGCAGTTGGGGGAGGTAACTGAAATCCGGCTGAAGATGCGTCAGCA
GCAGGGCGGCCGAAATTTTTCATTTGTCCGGTTTTCCGACAAGGAGGCAG
CGGCCCGGGCGGTGGCAGAGTTGGACCGACGACTGGAACTTCACGGACGC
GTGCTAACCATCTCGTACACAGCCGTGAACGACAAACTCCGTTTCTCGAA
CGTGCCCACGCACTGGCGGGCCGATCAGATCGAGGAGGCTTTGGTGGCCC
AAGGCTGCGACGGTGTGTACGAGATAGAAATGCCGCTGGCGGGGGACGGG
ATCAGCAACCAGGGCTTCTGCGTGATCGAATTCGACAATCACCCGGCGGC
CCAGCGCGCCTACCGCCTGACCACCACGGCTGCGAACGGCGTGACCATGG
ACGGGAGGCGACTGACGGTGGAGTGGCCCGATGGCGTGGATCGGTCCACA
CAACAGCAGCAAATGCAGCGTGCGGGCTTGAGCAACCAGCTCGACGACGC
CATGCAGGTCAAGAACCTGTACGTAGGGGGGGTGCCCGTGGACGTGACGG
AGCAAGAAATGCGCGCGGTCTTCTCGGTGTACGGCGAGATCGACAACGTG
CGGCTTGCAGGCCAAGCTCCCAACGCCCGTCGGCCTGATTTTGCTTTCAT
CAATTACCGGGACCGGGACTCCGCGATCCGCGCGCTAGAAGCGCTGCGTG
TGGAACCCAAAGCGCAAATTCGGGGACACGCTTTGGAGGTGGAAATGGCG
CGCCCTCCCAAGAATTCGATGATGCAGCAACAGCGGAGCATGTATGGACA
GGCTGCCGTTTACGCTCAGGGGTTGCAACAAGCGCAATATGCCCAAGGGA
CCGGGTACACGGCGGGGGGAAGCTACTACCAACAGACACAAGGTGGGGGG
TGGCAGCAGCAGCCGACGGAGGCGGCGTACGGGATTTATGCGCAACAGCT
GGCGGCTCAACAAGGATGGACTGGACAACAAGGGTACAGTACCACGGGCG
TGCAGCAGCCTTTCGCCGCTTTTGGGCAACAGCAGCAGCAGCAGTGGACG
GGGACGGGTCAGCAACAGACGTGGAACCAAACAGGTACAGGCCAGCAAAG
CTACGGTCGATTTTAAATGAGCGACAAATTGACCCCGGATATGGTGGGGA
AAATGAAGGTTGCTGAGTTGAAGGCACAACTAACAAATCTTGGCTTAGAT
ACCAGTGGCTTGAAAGCGGCTCTCGCAGCCCGCCTCCTCGAGCACATCAC
AAAAGCAGATGATGACGGCGAAGAGAAGGAGAAGAAAGCGGAGGAGGTGA
AGGAGGAGAAGGAGGAGGAGGAGAGGAAGGAGGATGAGGCAGCGACACCA
CCACCAGAGCCTCCCACGCAGACGGAAGAGGAATCTCATCCAGGTGAAAA
GCGTAAAGAGCCTGAGACAGTTCCAGCCGAGCCCAGCGCTGAAGGCGGTG
CTGAAGCCGGGGAGGACACGGAGACTCACAAGAAAGCACGCGTGGAGGAG
ACAAACGGCACAGAGATGAAAACAGAGGAGGTCTCGGCGTCGGAACCAGC
AGCGGCACCAGTCTCCACGAGTCGTTGGGGGGCGGACAACCCGGTGGCCA
CCGCAGCCACCGACCTCCAGCAAGGAGGATCCGCAGGATTTGTGTTGGAC
AGTAAACCCGTGGCGGCGACACCGGCCCCCGTAAAGAAGGCGAAAGGCGC
GGAGATCTACGTGGGGAACCTGGATCCTTACACAACGGAGGAAGATTTGC
GGGCGCTCTTCTCGCAGTTGGGGGAGGTAACTGAAATCCGGCTGAAGATG
CGTCAGCAGCAGGGCGGCCGAAATTTTTCATTTGTCCGGTTTTCCGACAA
GGAGGCAGCGGCCCGGGCGGTGGCAGAGTTGGACCGACGACTGGAACTTC
ACGGACGCGTGCTAACCATCTCGTACACAGCCGTGAACGACAAACTCCGT
TTCTCGAACGTGCCCACGCACTGGCGGGCCGATCAGATCGAGGAGGCTTT
GGTGGCCCAAGGCTGCGACGGTGTGTACGAGATAGAAATGCCGCTGGCGG
GGGACGGGATCAGCAACCAGGGCTTCTGCGTGATCGAATTCGACAATCAC
CCGGCGGCCCAGCGCGCCTACCGCCTGACCACCACGGCTGCGAACGGCGT
GACCATGGACGGGAGGCGACTGACGGTGGAGTGGCCCGATGGCGTGGATC
GGTCCACACAACAGCAGCAAATGCAGCGTGCGGGCTTGAGCAACCAGCTC
GACGACGCCATGCAGGTCAAGAACCTGTACGTAGGGGGGGTGCCCGTGGA
CGTGACGGAGCAAGAAATGCGCGCGGTCTTCTCGGTGTACGGCGAGATCG
ACAACGTGCGGCTTGCAGGCCAAGCTCCCAACGCCCGTCGGCCTGATTTT
GCTTTCATCAATTACCGGGACCGGGACTCCGCGATCCGCGCGCTAGAAGC
GCTGCGTGTGGAACCCAAAGCGCAAATTCGGGGACACGCTTTGGAGGTGG
AAATGGCGCGCCCTCCCAAGAATTCGATGATGCAGCAACAGCGGAGCATG
TATGGACAGGCTGCCGTTTACGCTCAGGGGTTGCAACAAGCGCAATATGC
CCAAGGGACCGGGTACACGGCGGGGGGAAGCTACTACCAACAGACACAAG
GTGGGGGGTGGCAGCAGCAGCCGACGGAGGCGGCGTACGGGATTTATGCG
CAACAGCTGGCGGCTCAACAAGGATGGACTGGACAACAAGGGTACAGTAC
CACGGGCGTGCAGCAGCCTTTCGCCGCTTTTGGGCAACAGCAGCAGCAGC
AGTGGACGGGGACGGGTCAGCAACAGACGTGGAACCAAACAGGTACAGGC
CAGCAAAGCTACGGTCGATTTTAAATGAGCGACAAATTGACCCCGGATAT
GGTGGGGAAAATGAAG back to top
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