EWM28529.1, cds2062 (CDS) Nannochloropsis gaditana

Overview
NameEWM28529.1
Unique Namecds2062
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:821728..821769 -
Alignment locationCM002458.1:819896..821611 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28529.1
ProductDNA-binding SAP
Orig transcript idgnl|cribi|Naga_100009g92.572.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:821728..821769 -
CM002458.1supercontigCM002458.1:819896..821611 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003677DNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR003034SAP_dom
IPR000504RRM_dom
Homology
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|585110947|gb|EWM28529.1| (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 1200.65 bits (3105), Expect = 0.000e+0
Identity = 585/585 (100.00%), Postives = 585/585 (100.00%), Query Frame = 0
Query:    1 MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKADDDGEEKEKKAEEVKEEKEEEERKEDEAATPPPEPPTQTEEESHPGEKRKEPETVPAEPSAEGGAEAGEDTETHKKARVEETNGTEMKTEEVSASEPAAAPVSTSRWGADNPVATAATDLQQGGSAGFVLDSKPVAATPAPVKKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARPPKNSMMQQQRSMYGQAAVYAQGLQQAQYAQGTGYTAGGSYYQQTQGGGWQQQPTEAAYGIYAQQLAAQQGWTGQQGYSTTGVQQPFAAFGQQQQQQWTGTGQQQTWNQTGTGQQSYGRF 585
            MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKADDDGEEKEKKAEEVKEEKEEEERKEDEAATPPPEPPTQTEEESHPGEKRKEPETVPAEPSAEGGAEAGEDTETHKKARVEETNGTEMKTEEVSASEPAAAPVSTSRWGADNPVATAATDLQQGGSAGFVLDSKPVAATPAPVKKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARPPKNSMMQQQRSMYGQAAVYAQGLQQAQYAQGTGYTAGGSYYQQTQGGGWQQQPTEAAYGIYAQQLAAQQGWTGQQGYSTTGVQQPFAAFGQQQQQQWTGTGQQQTWNQTGTGQQSYGRF
Sbjct:    1 MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKADDDGEEKEKKAEEVKEEKEEEERKEDEAATPPPEPPTQTEEESHPGEKRKEPETVPAEPSAEGGAEAGEDTETHKKARVEETNGTEMKTEEVSASEPAAAPVSTSRWGADNPVATAATDLQQGGSAGFVLDSKPVAATPAPVKKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARPPKNSMMQQQRSMYGQAAVYAQGLQQAQYAQGTGYTAGGSYYQQTQGGGWQQQPTEAAYGIYAQQLAAQQGWTGQQGYSTTGVQQPFAAFGQQQQQQWTGTGQQQTWNQTGTGQQSYGRF 585          
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|1150724275|ref|XP_020272954.1| (heterogeneous nuclear ribonucleoprotein Q-like [Asparagus officinalis])

HSP 1 Score: 144.05 bits (362), Expect = 2.782e-33
Identity = 82/263 (31.18%), Postives = 147/263 (55.89%), Query Frame = 0
Query:  190 KKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQG-GRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIE-MPLAGDGISNQGFCVIEFDNHPAAQRAYR-LTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVE 449
            K  K  EI++G LD    EEDLR +F ++GE+ E+R+ M  Q G  + ++FVR++D   A +AVA+ ++ +E+ G++   S    ND +   N+   W+ D I + L   G + +  +  MP + +  SN+GF ++E + +  A  AY+ L    A G    GR + V+W + +D    +++M++            VK++Y  G+P    E+++R  F  +GEI+ + LA    +++R DFAF+NY++R++A+  +E+   E
Sbjct:   84 KSRKKTEIFIGGLDRDAKEEDLRKVFGEVGEIVEVRMIMDGQSGKNKGYAFVRYADASQAKKAVAQFEK-VEVCGKLCGASALKGNDTIFLGNIDKKWKKDDIVKFLQEIGIEKIEAVTVMPDSSNADSNRGFALVELETNKDAVNAYKKLQKKDAFG---KGRSIKVDWAEPLD-DPDEEEMKK------------VKSVYAEGIPDSWDEEKVREPFKKFGEIERIVLARNIKSSKRKDFAFVNYQNREAALSCIESFDKE 329          
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|670392141|ref|XP_008676441.1| (RNA-binding (RRM/RBD/RNP motifs) family protein isoform X2 [Zea mays])

HSP 1 Score: 141.354 bits (355), Expect = 9.380e-33
Identity = 92/274 (33.58%), Postives = 146/274 (53.28%), Query Frame = 0
Query:  194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
            G+E+++G L    TEEDLR L   LGE+ E+RL K +  +  + F+FV F DKEAA RA+ ++  R E  GR L  S +    +L   NVP     +++   +  +G  GV  IEM    D   N+GF  +E+ NH  A  A R   ++ N   +DG +LTV W             +  G ++    A QVK +YV  +P +V++++++ +F  +GE+  + L       +R DF F+++ +R SA++A++      K +I G  LEV MA+P
Sbjct:  104 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDR-EFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKGP-GVINIEM-FKHDPNRNRGFLFVEYYNHACADYA-RQKLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSE---KYEIDGQVLEVSMAKP 356          
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|514794288|ref|XP_004973023.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X2 [Setaria italica] >gi|944236730|gb|KQL01068.1| hypothetical protein SETIT_013687mg [Setaria italica])

HSP 1 Score: 140.969 bits (354), Expect = 1.502e-32
Identity = 91/274 (33.21%), Postives = 147/274 (53.65%), Query Frame = 0
Query:  194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
            G+E+++G L    TEEDLR L   LGE+ E+RL K ++ +  + F+FV F+DK+AA RA+ +L  R E  GR L  S +    +L   NVP     +++   +  +G  GV  IEM    D   N+GF  +E+ NH  A  A R   ++ N   +DG +LTV W             +  G ++    A QVK +YV  +P + ++++++ +F  +GE+  + L       +R DF F+++ +R SA++A++      K +I G  LEV MA+P
Sbjct:  105 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKETKENKGFAFVTFTDKDAAQRAIEDLQDR-EYKGRTLRCSLSQAKHRLFVGNVPKGLSEEELRNIIKGKG-PGVVNIEM-FKHDPNRNRGFLFVEYYNHACADYA-RQNLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAASQVKTIYVKNLPENASKEKIKELFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG---SEKYEIDGQVLEVSMAKP 357          
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|1205970114|ref|XP_021320382.1| (heterogeneous nuclear ribonucleoprotein R isoform X2 [Sorghum bicolor] >gi|992161757|gb|KXG24270.1| hypothetical protein SORBI_3007G017400 [Sorghum bicolor])

HSP 1 Score: 140.584 bits (353), Expect = 2.083e-32
Identity = 90/274 (32.85%), Postives = 148/274 (54.01%), Query Frame = 0
Query:  194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
            G+++++G L    TE+DLR L   LGE+ E+RL K +     + F+FV F+DK+AA RA+ ++  R E  GR L  S +    +L   NVP     +++   +  +G  GV  IEM    D   N+GF  +E+ NH  A+ A RL  ++ N   +DG +LTV W             +  G ++    A QVK +YV  +P +V++++++ +F  +GE+  + L       +R DF F+++ +R SA++A++      K +I G  LEV MA+P
Sbjct:  118 GSQVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKGFAFVTFTDKDAAQRAIEDVQDR-EYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKGKG-PGVVNIEM-FKHDPNRNRGFLFVEYYNHACAEYA-RLKLSSRN-FKVDGSQLTVSW------------AEPKGQTDPSSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG---SEKYEIDGQVLEVSMAKP 370          
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|168060688|ref|XP_001782326.1| (predicted protein [Physcomitrella patens] >gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 137.117 bits (344), Expect = 3.836e-32
Identity = 98/286 (34.27%), Postives = 151/286 (52.80%), Query Frame = 0
Query:  173 AGFVLDSKPVAATPAPV---KKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRN--FSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM---PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPD---GVDRSTQQQQMQRAGLSNQLDDAM-QVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEAL 446
            +G  +D    A  P P+   +K K  E+YVG LD  TTEEDL++LF + GEV EIRL MR  Q G+N  F+F+R++    A RA  + +  +E+ GR  T   +  ND L   N+   W+ + + E L +   + + E+ +   P   +G+ N+GF  IEF  H  A  A+R                 ++ PD   G +RS +    Q   L    +D M QVK+++V G+P+   E  +R  F  YGEI+ + LA    +A+R DF F+NY +R++A+  ++AL
Sbjct:   31 SGEAVDYDAEAQHPLPLSDRRKHKRLEVYVGGLDKDTTEEDLKSLFKKAGEVIEIRL-MRNPQTGKNKGFAFIRYASAAMAKRATEDFET-VEIRGRQCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLSIESIEELTLMEDPQV-EGV-NRGFAFIEFSTHKDALDAFR----------------KLQQPDAIFGTERSAKVAWAQ--PLYEPDEDTMSQVKSVFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNYMERNAALTCIDAL 294          
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|168042168|ref|XP_001773561.1| (predicted protein [Physcomitrella patens] >gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 135.961 bits (341), Expect = 4.287e-32
Identity = 96/266 (36.09%), Postives = 141/266 (53.01%), Query Frame = 0
Query:  190 KKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRN--FSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM---PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPD---GVDRSTQQQQMQRAGLSNQLDDAM-QVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEAL 446
            +K K  E+YVG LD  TTEEDL+ LF + GEV E+RL MR  Q G+N  ++FVR+S    A RA  EL   +E+ GR  T   +  ND L   N+   W+ + + E L +   + + E+ +   P   +G+ N+GF  IEF  H  A  A+R                 ++ PD   G DRS +    Q   L    +D M QVK+++V G+P    E  +R  F  YGEI+ + LA    +A+R DF F+N+ +RD+A+  ++AL
Sbjct:   47 RKYKRLEVYVGGLDKDTTEEDLKPLFEKAGEVVEVRL-MRNPQTGKNRGYAFVRYSSAAMAKRAAEELGT-IEIRGRECTAKPSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELTLMEDPQV-EGL-NRGFAFIEFSTHKDALEAFR----------------KLQQPDAIFGADRSAKVAWAQ--PLYEPDEDTMSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDAL 290          
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|1142687130|gb|AQK51056.1| (RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays])

HSP 1 Score: 137.887 bits (346), Expect = 8.639e-32
Identity = 92/275 (33.45%), Postives = 146/275 (53.09%), Query Frame = 0
Query:  194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM-PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
            G+E+++G L    TEEDLR L   LGE+ E+RL K +  +  + F+FV F DKEAA RA+ ++  R E  GR L  S +    +L   NVP     +++   +  +G  GV  IEM     D   N+GF  +E+ NH  A  A R   ++ N   +DG +LTV W             +  G ++    A QVK +YV  +P +V++++++ +F  +GE+  + L       +R DF F+++ +R SA++A++      K +I G  LEV MA+P
Sbjct:  104 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDR-EFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKG-PGVINIEMFKDQHDPNRNRGFLFVEYYNHACADYA-RQKLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSE---KYEIDGQVLEVSMAKP 358          
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|212275376|ref|NP_001130564.1| (RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays] >gi|670392139|ref|XP_008676440.1| RNA-binding (RRM/RBD/RNP motifs) family protein isoform X1 [Zea mays] >gi|194689494|gb|ACF78831.1| unknown [Zea mays] >gi|219887513|gb|ACL54131.1| unknown [Zea mays] >gi|238010456|gb|ACR36263.1| unknown [Zea mays] >gi|1142687127|gb|AQK51053.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays] >gi|1142687128|gb|AQK51054.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays] >gi|1142687132|gb|AQK51058.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays] >gi|1142687133|gb|AQK51059.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays])

HSP 1 Score: 138.272 bits (347), Expect = 1.234e-31
Identity = 92/275 (33.45%), Postives = 146/275 (53.09%), Query Frame = 0
Query:  194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM-PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
            G+E+++G L    TEEDLR L   LGE+ E+RL K +  +  + F+FV F DKEAA RA+ ++  R E  GR L  S +    +L   NVP     +++   +  +G  GV  IEM     D   N+GF  +E+ NH  A  A R   ++ N   +DG +LTV W             +  G ++    A QVK +YV  +P +V++++++ +F  +GE+  + L       +R DF F+++ +R SA++A++      K +I G  LEV MA+P
Sbjct:  104 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDR-EFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKGP-GVINIEMFKDQHDPNRNRGFLFVEYYNHACADYA-RQKLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSE---KYEIDGQVLEVSMAKP 358          
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|514794280|ref|XP_004973021.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Setaria italica] >gi|514794284|ref|XP_004973022.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Setaria italica] >gi|944236728|gb|KQL01066.1| hypothetical protein SETIT_013687mg [Setaria italica] >gi|944236729|gb|KQL01067.1| hypothetical protein SETIT_013687mg [Setaria italica])

HSP 1 Score: 137.887 bits (346), Expect = 1.533e-31
Identity = 91/275 (33.09%), Postives = 147/275 (53.45%), Query Frame = 0
Query:  194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM-PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
            G+E+++G L    TEEDLR L   LGE+ E+RL K ++ +  + F+FV F+DK+AA RA+ +L  R E  GR L  S +    +L   NVP     +++   +  +G  GV  IEM     D   N+GF  +E+ NH  A  A R   ++ N   +DG +LTV W             +  G ++    A QVK +YV  +P + ++++++ +F  +GE+  + L       +R DF F+++ +R SA++A++      K +I G  LEV MA+P
Sbjct:  105 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKETKENKGFAFVTFTDKDAAQRAIEDLQDR-EYKGRTLRCSLSQAKHRLFVGNVPKGLSEEELRNIIKGKGP-GVVNIEMFKDQHDPNRNRGFLFVEYYNHACADYA-RQNLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAASQVKTIYVKNLPENASKEKIKELFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG---SEKYEIDGQVLEVSMAKP 359          
The following BLAST results are available for this feature:
BLAST of EWM28529.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110947|gb|EWM28529.1|0.000e+0100.00DNA-binding SAP [Nannochloropsis gaditana][more]
gi|1150724275|ref|XP_020272954.1|2.782e-3331.18heterogeneous nuclear ribonucleoprotein Q-like [As... [more]
gi|670392141|ref|XP_008676441.1|9.380e-3333.58RNA-binding (RRM/RBD/RNP motifs) family protein is... [more]
gi|514794288|ref|XP_004973023.1|1.502e-3233.21PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]
gi|1205970114|ref|XP_021320382.1|2.083e-3232.85heterogeneous nuclear ribonucleoprotein R isoform ... [more]
gi|168060688|ref|XP_001782326.1|3.836e-3234.27predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|168042168|ref|XP_001773561.1|4.287e-3236.09predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1142687130|gb|AQK51056.1|8.639e-3233.45RNA-binding (RRM/RBD/RNP motifs) family protein [Z... [more]
gi|212275376|ref|NP_001130564.1|1.234e-3133.45RNA-binding (RRM/RBD/RNP motifs) family protein [Z... [more]
gi|514794280|ref|XP_004973021.1|1.533e-3133.09PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2070rna2070Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications