EWM28529.1, cds2062 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|585110947|gb|EWM28529.1| (DNA-binding SAP [Nannochloropsis gaditana]) HSP 1 Score: 1200.65 bits (3105), Expect = 0.000e+0 Identity = 585/585 (100.00%), Postives = 585/585 (100.00%), Query Frame = 0
Query: 1 MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKADDDGEEKEKKAEEVKEEKEEEERKEDEAATPPPEPPTQTEEESHPGEKRKEPETVPAEPSAEGGAEAGEDTETHKKARVEETNGTEMKTEEVSASEPAAAPVSTSRWGADNPVATAATDLQQGGSAGFVLDSKPVAATPAPVKKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARPPKNSMMQQQRSMYGQAAVYAQGLQQAQYAQGTGYTAGGSYYQQTQGGGWQQQPTEAAYGIYAQQLAAQQGWTGQQGYSTTGVQQPFAAFGQQQQQQWTGTGQQQTWNQTGTGQQSYGRF 585
MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKADDDGEEKEKKAEEVKEEKEEEERKEDEAATPPPEPPTQTEEESHPGEKRKEPETVPAEPSAEGGAEAGEDTETHKKARVEETNGTEMKTEEVSASEPAAAPVSTSRWGADNPVATAATDLQQGGSAGFVLDSKPVAATPAPVKKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARPPKNSMMQQQRSMYGQAAVYAQGLQQAQYAQGTGYTAGGSYYQQTQGGGWQQQPTEAAYGIYAQQLAAQQGWTGQQGYSTTGVQQPFAAFGQQQQQQWTGTGQQQTWNQTGTGQQSYGRF
Sbjct: 1 MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKADDDGEEKEKKAEEVKEEKEEEERKEDEAATPPPEPPTQTEEESHPGEKRKEPETVPAEPSAEGGAEAGEDTETHKKARVEETNGTEMKTEEVSASEPAAAPVSTSRWGADNPVATAATDLQQGGSAGFVLDSKPVAATPAPVKKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARPPKNSMMQQQRSMYGQAAVYAQGLQQAQYAQGTGYTAGGSYYQQTQGGGWQQQPTEAAYGIYAQQLAAQQGWTGQQGYSTTGVQQPFAAFGQQQQQQWTGTGQQQTWNQTGTGQQSYGRF 585
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|1150724275|ref|XP_020272954.1| (heterogeneous nuclear ribonucleoprotein Q-like [Asparagus officinalis]) HSP 1 Score: 144.05 bits (362), Expect = 2.782e-33 Identity = 82/263 (31.18%), Postives = 147/263 (55.89%), Query Frame = 0
Query: 190 KKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQG-GRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIE-MPLAGDGISNQGFCVIEFDNHPAAQRAYR-LTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVE 449
K K EI++G LD EEDLR +F ++GE+ E+R+ M Q G + ++FVR++D A +AVA+ ++ +E+ G++ S ND + N+ W+ D I + L G + + + MP + + SN+GF ++E + + A AY+ L A G GR + V+W + +D +++M++ VK++Y G+P E+++R F +GEI+ + LA +++R DFAF+NY++R++A+ +E+ E
Sbjct: 84 KSRKKTEIFIGGLDRDAKEEDLRKVFGEVGEIVEVRMIMDGQSGKNKGYAFVRYADASQAKKAVAQFEK-VEVCGKLCGASALKGNDTIFLGNIDKKWKKDDIVKFLQEIGIEKIEAVTVMPDSSNADSNRGFALVELETNKDAVNAYKKLQKKDAFG---KGRSIKVDWAEPLD-DPDEEEMKK------------VKSVYAEGIPDSWDEEKVREPFKKFGEIERIVLARNIKSSKRKDFAFVNYQNREAALSCIESFDKE 329
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|670392141|ref|XP_008676441.1| (RNA-binding (RRM/RBD/RNP motifs) family protein isoform X2 [Zea mays]) HSP 1 Score: 141.354 bits (355), Expect = 9.380e-33 Identity = 92/274 (33.58%), Postives = 146/274 (53.28%), Query Frame = 0
Query: 194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
G+E+++G L TEEDLR L LGE+ E+RL K + + + F+FV F DKEAA RA+ ++ R E GR L S + +L NVP +++ + +G GV IEM D N+GF +E+ NH A A R ++ N +DG +LTV W + G ++ A QVK +YV +P +V++++++ +F +GE+ + L +R DF F+++ +R SA++A++ K +I G LEV MA+P
Sbjct: 104 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDR-EFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKGP-GVINIEM-FKHDPNRNRGFLFVEYYNHACADYA-RQKLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSE---KYEIDGQVLEVSMAKP 356
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|514794288|ref|XP_004973023.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X2 [Setaria italica] >gi|944236730|gb|KQL01068.1| hypothetical protein SETIT_013687mg [Setaria italica]) HSP 1 Score: 140.969 bits (354), Expect = 1.502e-32 Identity = 91/274 (33.21%), Postives = 147/274 (53.65%), Query Frame = 0
Query: 194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
G+E+++G L TEEDLR L LGE+ E+RL K ++ + + F+FV F+DK+AA RA+ +L R E GR L S + +L NVP +++ + +G GV IEM D N+GF +E+ NH A A R ++ N +DG +LTV W + G ++ A QVK +YV +P + ++++++ +F +GE+ + L +R DF F+++ +R SA++A++ K +I G LEV MA+P
Sbjct: 105 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKETKENKGFAFVTFTDKDAAQRAIEDLQDR-EYKGRTLRCSLSQAKHRLFVGNVPKGLSEEELRNIIKGKG-PGVVNIEM-FKHDPNRNRGFLFVEYYNHACADYA-RQNLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAASQVKTIYVKNLPENASKEKIKELFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG---SEKYEIDGQVLEVSMAKP 357
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|1205970114|ref|XP_021320382.1| (heterogeneous nuclear ribonucleoprotein R isoform X2 [Sorghum bicolor] >gi|992161757|gb|KXG24270.1| hypothetical protein SORBI_3007G017400 [Sorghum bicolor]) HSP 1 Score: 140.584 bits (353), Expect = 2.083e-32 Identity = 90/274 (32.85%), Postives = 148/274 (54.01%), Query Frame = 0
Query: 194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
G+++++G L TE+DLR L LGE+ E+RL K + + F+FV F+DK+AA RA+ ++ R E GR L S + +L NVP +++ + +G GV IEM D N+GF +E+ NH A+ A RL ++ N +DG +LTV W + G ++ A QVK +YV +P +V++++++ +F +GE+ + L +R DF F+++ +R SA++A++ K +I G LEV MA+P
Sbjct: 118 GSQVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKGFAFVTFTDKDAAQRAIEDVQDR-EYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKGKG-PGVVNIEM-FKHDPNRNRGFLFVEYYNHACAEYA-RLKLSSRN-FKVDGSQLTVSW------------AEPKGQTDPSSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG---SEKYEIDGQVLEVSMAKP 370
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|168060688|ref|XP_001782326.1| (predicted protein [Physcomitrella patens] >gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 137.117 bits (344), Expect = 3.836e-32 Identity = 98/286 (34.27%), Postives = 151/286 (52.80%), Query Frame = 0
Query: 173 AGFVLDSKPVAATPAPV---KKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRN--FSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM---PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPD---GVDRSTQQQQMQRAGLSNQLDDAM-QVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEAL 446
+G +D A P P+ +K K E+YVG LD TTEEDL++LF + GEV EIRL MR Q G+N F+F+R++ A RA + + +E+ GR T + ND L N+ W+ + + E L + + + E+ + P +G+ N+GF IEF H A A+R ++ PD G +RS + Q L +D M QVK+++V G+P+ E +R F YGEI+ + LA +A+R DF F+NY +R++A+ ++AL
Sbjct: 31 SGEAVDYDAEAQHPLPLSDRRKHKRLEVYVGGLDKDTTEEDLKSLFKKAGEVIEIRL-MRNPQTGKNKGFAFIRYASAAMAKRATEDFET-VEIRGRQCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLSIESIEELTLMEDPQV-EGV-NRGFAFIEFSTHKDALDAFR----------------KLQQPDAIFGTERSAKVAWAQ--PLYEPDEDTMSQVKSVFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNYMERNAALTCIDAL 294
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|168042168|ref|XP_001773561.1| (predicted protein [Physcomitrella patens] >gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 135.961 bits (341), Expect = 4.287e-32 Identity = 96/266 (36.09%), Postives = 141/266 (53.01%), Query Frame = 0
Query: 190 KKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRN--FSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM---PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPD---GVDRSTQQQQMQRAGLSNQLDDAM-QVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEAL 446
+K K E+YVG LD TTEEDL+ LF + GEV E+RL MR Q G+N ++FVR+S A RA EL +E+ GR T + ND L N+ W+ + + E L + + + E+ + P +G+ N+GF IEF H A A+R ++ PD G DRS + Q L +D M QVK+++V G+P E +R F YGEI+ + LA +A+R DF F+N+ +RD+A+ ++AL
Sbjct: 47 RKYKRLEVYVGGLDKDTTEEDLKPLFEKAGEVVEVRL-MRNPQTGKNRGYAFVRYSSAAMAKRAAEELGT-IEIRGRECTAKPSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELTLMEDPQV-EGL-NRGFAFIEFSTHKDALEAFR----------------KLQQPDAIFGADRSAKVAWAQ--PLYEPDEDTMSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDAL 290
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|1142687130|gb|AQK51056.1| (RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays]) HSP 1 Score: 137.887 bits (346), Expect = 8.639e-32 Identity = 92/275 (33.45%), Postives = 146/275 (53.09%), Query Frame = 0
Query: 194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM-PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
G+E+++G L TEEDLR L LGE+ E+RL K + + + F+FV F DKEAA RA+ ++ R E GR L S + +L NVP +++ + +G GV IEM D N+GF +E+ NH A A R ++ N +DG +LTV W + G ++ A QVK +YV +P +V++++++ +F +GE+ + L +R DF F+++ +R SA++A++ K +I G LEV MA+P
Sbjct: 104 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDR-EFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKG-PGVINIEMFKDQHDPNRNRGFLFVEYYNHACADYA-RQKLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSE---KYEIDGQVLEVSMAKP 358
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|212275376|ref|NP_001130564.1| (RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays] >gi|670392139|ref|XP_008676440.1| RNA-binding (RRM/RBD/RNP motifs) family protein isoform X1 [Zea mays] >gi|194689494|gb|ACF78831.1| unknown [Zea mays] >gi|219887513|gb|ACL54131.1| unknown [Zea mays] >gi|238010456|gb|ACR36263.1| unknown [Zea mays] >gi|1142687127|gb|AQK51053.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays] >gi|1142687128|gb|AQK51054.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays] >gi|1142687132|gb|AQK51058.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays] >gi|1142687133|gb|AQK51059.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Zea mays]) HSP 1 Score: 138.272 bits (347), Expect = 1.234e-31 Identity = 92/275 (33.45%), Postives = 146/275 (53.09%), Query Frame = 0
Query: 194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM-PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
G+E+++G L TEEDLR L LGE+ E+RL K + + + F+FV F DKEAA RA+ ++ R E GR L S + +L NVP +++ + +G GV IEM D N+GF +E+ NH A A R ++ N +DG +LTV W + G ++ A QVK +YV +P +V++++++ +F +GE+ + L +R DF F+++ +R SA++A++ K +I G LEV MA+P
Sbjct: 104 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDR-EFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKGP-GVINIEMFKDQHDPNRNRGFLFVEYYNHACADYA-RQKLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSE---KYEIDGQVLEVSMAKP 358
BLAST of EWM28529.1 vs. NCBI_GenBank
Match: gi|514794280|ref|XP_004973021.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Setaria italica] >gi|514794284|ref|XP_004973022.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Setaria italica] >gi|944236728|gb|KQL01066.1| hypothetical protein SETIT_013687mg [Setaria italica] >gi|944236729|gb|KQL01067.1| hypothetical protein SETIT_013687mg [Setaria italica]) HSP 1 Score: 137.887 bits (346), Expect = 1.533e-31 Identity = 91/275 (33.09%), Postives = 147/275 (53.45%), Query Frame = 0
Query: 194 GAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEM-PLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARP 466
G+E+++G L TEEDLR L LGE+ E+RL K ++ + + F+FV F+DK+AA RA+ +L R E GR L S + +L NVP +++ + +G GV IEM D N+GF +E+ NH A A R ++ N +DG +LTV W + G ++ A QVK +YV +P + ++++++ +F +GE+ + L +R DF F+++ +R SA++A++ K +I G LEV MA+P
Sbjct: 105 GSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKETKENKGFAFVTFTDKDAAQRAIEDLQDR-EYKGRTLRCSLSQAKHRLFVGNVPKGLSEEELRNIIKGKGP-GVVNIEMFKDQHDPNRNRGFLFVEYYNHACADYA-RQNLSSPN-FKVDGSQLTVSW------------AEPKGSTDASSAASQVKTIYVKNLPENASKEKIKELFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG---SEKYEIDGQVLEVSMAKP 359 The following BLAST results are available for this feature:
BLAST of EWM28529.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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