rna207, rna207 (mRNA) Nannochloropsis gaditana

Overview
Namerna207
Unique Namerna207
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length947
Alignment locationCM002455.1:532929..534648 -

Link to JBrowse

Properties
Property NameValue
ProductPDZ domain protein
Orig transcript idgnl|cribi|Naga_100013g8.9802.mrna
Orig protein idgnl|cribi|Naga_100013g8.9802
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:532929..534648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g8gene198Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna207rna207-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30514.1cds207Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna207 ID=rna207|Name=rna207|organism=Nannochloropsis gaditana|type=mRNA|length=947bp
GTTTTCACGTATCGACCGGCACATTTTGCGAAACGGAAATGTTTTTGGTG
AGTCTTGCGGGAACCGAGAGCTTGTGTCGTCACTACCAGCTAGGCCGCCC
GCCCCTCAACACCATGCGCAGCTCGCTGTGCACTCGAAAGCAAGGATCTG
AAACTCCACGGAAGAGGGATGATGGACGCCAGTGCATCATGCTGGGATTT
TGTACGCGCGGTTTAATGGTGTACACGTCCTTTAGACTTTCGAAGTTTGA
AGCACGGTTTACGATCTGCTAGGACTGAGAAGGTGGCTGATGTTTGCCGC
GTTGAATCACTCATTTCTGATGGTGTAGGAAACTCATAATGTTCCCATCG
ATACCGTACAGGTGGGCTACATTTACAATAAGCATACCGCCTTGCGGTTC
CCACCCTCACCTCGCGGTTAGGCCCGCACCCCGTAGGCCTTTGATATCCT
TTCCTCCCAGGAACGATGAGCGGCCCTTTCGTCCGCATGCTCGTCAATAT
TGCCGTCATGTCAGCATCTGTCTTCTCGCGTGCTTTCGTTGCAGCCTATC
ATCAAGCGCTGCAAAACGCTAAACAGGGTGGCGGCACGGCTGCCAAAGCA
GCCTCTCGCACGTACGGCGGAATGGCCCCTGACGAGGCCCTGAAGGTCTT
AAATCTTCAGAAGACAGACTTGAAGTCCTCCGCCCGCATCATTGAGCAGT
TTGACAAATATTTTTCACAGAACGAACCCGGCAAAGGAGGTTCTTTCTAT
CTGCAATCGAAGGTCTACCGGGCGAAGGAGTGTCTGGAACGGGCTATCAA
AGCGGAAAAAGCGAAAGCTGGGAAGGCGAGGTCGGAGGCTGAGGAGGCCC
GGCGGGAGAATGCTCAAAAGCGAGGATAACATAAGCGTACAAAAGCATGA
AAGAACTGTATCATGATCCGTTTGGGATGGGTGAAAGGCTTACAAAA
back to top

protein sequence of rna207

>rna207-protein ID=rna207-protein|Name=rna207|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MTLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTM
MAGGMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPA
GNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVK
IVLERSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEKGKKKFFG
LF
back to top

mRNA from alignment at CM002455.1:532929..534648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna207 ID=rna207|Name=rna207|organism=Nannochloropsis gaditana|type=mRNA|length=1720bp|location=Sequence derived from alignment at CM002455.1:532929..534648- (Nannochloropsis gaditana)
TAAAGAGACTTTCTGACATGGCCCTCCTGCGATGCTCACGTTTTTGTTTC
TCGGTACAGCATGGTGTGGGACCAACGAGAGAGATATTGTTGGCTAGCTC
GTGAATATCACCGGCAATCTTTTGCTTGCTTTACAATGAAGTCTCCAAGC
TAGGGAGGTTGTTTGGTATGTCCTTTCTGGCTCACCCGCCATCTTCACGT
ATGTCGCTCTTTCTCTTCGTGATCTATCTGACCTGGTACGACATTGTCAA
GGTAGTAATCCTCACATAGCTGAAATTCATGCTTGCACTCATTTCGCACC
ATATTCTGCTCACTACAGAGACGTGGTAGCATAGCTTTACGCCTATTTTG
AAGAATGACGCTTTCCAAAGTCGCCGTTATGGTAGTAGCTGCAGCTTTTG
TCGGCTTGACCTCTGCTTTCGTCACGCCGAGTCTCAGCACCGCGTCCAGG
GCCACTACCGGCGTGGTGTCAAGATCTCACAGGTACGTGGGTGAAGTTCA
CGCAAAAGATCCCACTTATTACATTATCGTCCGACCAAAGTGGCAAGTCA
CATTCTTACATGCGCTCATTTTAAATGTGGGGTCCAGTACTCCATCAAGG
ACGACCATGATGGCGGGCGGCATGAGCGAATTCAACAAGAATCGAGCGGC
TCGTAAACCGGGCCCCCTGGACCTAGTGGTTGAGCTCCAGAAGCCGCTGG
GCATTGTGCTGGAAGAGGACGAGAAAGGCAACGTGTATGTGAAGGAGCTG
TCCCCCGCGGGAAACGCAATGCGGGTACGTAGGACGCCTGAGAAGTGTGA
AAGAAATGGGATCAACAATTATTTGGTCTTTTGGCTCAAATCATTGAATA
AGCGGCAAGCGGAATAGGTGGTTACCGCTTTTATTCAACACTTCGAACAC
CGCACTCACCCGCTCAAAACCCCTCACCGTCCTCTCAGTCGGGCAAAGTG
GAGAAAGGTGACCTGGTGACTATGATCAGTGCCACGTTTGGGGACGAATG
CTGGAGCGCGCGGGGAGCGGGACTGGGCATGATCATGCAGGCCATCAAAG
TCCGTCAGGGGAACACGGTCAAGATTGTCTTGGAGCGGTCCAAGGCGGCA
CCGAAGAAGAGCGTGTTCAAGGCCCCCGCCCCCAAGGCGAAGCCCGCGCC
CAAGAAGCCCGACGAGGCCACGCTCCTCAGGCAACTGGAGGACGAGGAGA
AGGGAAAGAAGAAATTCTTCGGCTTGTTTTAATCCGGTGTGGAAGCACGG
CGACTGGAAGTGCCGAGGAAGGCTCAAGGCATTCGGGCGTGGAGTAGTAC
TTAGAGCAGCCAGCGTCAAGAGTAAGTTCTGACTTGTCTATGGACTGAAG
TGCGAGAGTCTAGGATGCTCGAATGCTTTTACTGTTGACCCCATCGACTG
GCAGGTCTTGTCCTCGTTATTACTCTGTTTCCGAGATTGGAGCAGCTCAT
TGCGGGAAACCAGTATATAAAAGTATCGTGACTGCGCCCGTGAGGTGCTT
GATGGCTGGGGTTGGAGACTAGGGCGCTCGTCCAGTGCAACTTGAAAATG
GTGCACACCTAGATAGGCAGAGCGAAAGAAATAAACACGACGGAATCTCA
TTTCCGCGACAGTCACACACACCCGCCATTGCTATGTTGGCAGTTCAGAA
ATGCCGAACGACGACAGGGTTTGGTGCCCGTGCTCTCAAACTACCAAAAA
TAATCAAGCCGCATCCGTGC
back to top

Coding sequence (CDS) from alignment at CM002455.1:532929..534648-

>rna207 ID=rna207|Name=rna207|organism=Nannochloropsis gaditana|type=CDS|length=1827bp|location=Sequence derived from alignment at CM002455.1:532929..534648- (Nannochloropsis gaditana)
TCGGGCAAAGTGGAGAAAGGTGACCTGGTGACTATGATCAGTGCCACGTT
TGGGGACGAATGCTGGAGCGCGCGGGGAGCGGGACTGGGCATGATCATGC
AGGCCATCAAAGTCCGTCAGGGGAACACGGTCAAGATTGTCTTGGAGCGG
TCCAAGGCGGCACCGAAGAAGAGCGTGTTCAAGGCCCCCGCCCCCAAGGC
GAAGCCCGCGCCCAAGAAGCCCGACGAGGCCACGCTCCTCAGGCAACTGG
AGGACGAGGAGAAGGGAAAGAAGAAATTCTTCGGCTTGTTTTAATACTCC
ATCAAGGACGACCATGATGGCGGGCGGCATGAGCGAATTCAACAAGAATC
GAGCGGCTCGTAAACCGGGCCCCCTGGACCTAGTGGTTGAGCTCCAGAAG
CCGCTGGGCATTGTGCTGGAAGAGGACGAGAAAGGCAACGTGTATGTGAA
GGAGCTGTCCCCCGCGGGAAACGCAATGCGGATGACGCTTTCCAAAGTCG
CCGTTATGGTAGTAGCTGCAGCTTTTGTCGGCTTGACCTCTGCTTTCGTC
ACGCCGAGTCTCAGCACCGCGTCCAGGGCCACTACCGGCGTGGTGTCAAG
ATCTCACAGTCGGGCAAAGTGGAGAAAGGTGACCTGGTGACTATGATCAG
TGCCACGTTTGGGGACGAATGCTGGAGCGCGCGGGGAGCGGGACTGGGCA
TGATCATGCAGGCCATCAAAGTCCGTCAGGGGAACACGGTCAAGATTGTC
TTGGAGCGGTCCAAGGCGGCACCGAAGAAGAGCGTGTTCAAGGCCCCCGC
CCCCAAGGCGAAGCCCGCGCCCAAGAAGCCCGACGAGGCCACGCTCCTCA
GGCAACTGGAGGACGAGGAGAAGGGAAAGAAGAAATTCTTCGGCTTGTTT
TAATACTCCATCAAGGACGACCATGATGGCGGGCGGCATGAGCGAATTCA
ACAAGAATCGAGCGGCTCGTAAACCGGGCCCCCTGGACCTAGTGGTTGAG
CTCCAGAAGCCGCTGGGCATTGTGCTGGAAGAGGACGAGAAAGGCAACGT
GTATGTGAAGGAGCTGTCCCCCGCGGGAAACGCAATGCGGATGACGCTTT
CCAAAGTCGCCGTTATGGTAGTAGCTGCAGCTTTTGTCGGCTTGACCTCT
GCTTTCGTCACGCCGAGTCTCAGCACCGCGTCCAGGGCCACTACCGGCGT
GGTGTCAAGATCTCACAGTCGGGCAAAGTGGAGAAAGGTGACCTGGTGAC
TATGATCAGTGCCACGTTTGGGGACGAATGCTGGAGCGCGCGGGGAGCGG
GACTGGGCATGATCATGCAGGCCATCAAAGTCCGTCAGGGGAACACGGTC
AAGATTGTCTTGGAGCGGTCCAAGGCGGCACCGAAGAAGAGCGTGTTCAA
GGCCCCCGCCCCCAAGGCGAAGCCCGCGCCCAAGAAGCCCGACGAGGCCA
CGCTCCTCAGGCAACTGGAGGACGAGGAGAAGGGAAAGAAGAAATTCTTC
GGCTTGTTTTAATACTCCATCAAGGACGACCATGATGGCGGGCGGCATGA
GCGAATTCAACAAGAATCGAGCGGCTCGTAAACCGGGCCCCCTGGACCTA
GTGGTTGAGCTCCAGAAGCCGCTGGGCATTGTGCTGGAAGAGGACGAGAA
AGGCAACGTGTATGTGAAGGAGCTGTCCCCCGCGGGAAACGCAATGCGGA
TGACGCTTTCCAAAGTCGCCGTTATGGTAGTAGCTGCAGCTTTTGTCGGC
TTGACCTCTGCTTTCGTCACGCCGAGTCTCAGCACCGCGTCCAGGGCCAC
TACCGGCGTGGTGTCAAGATCTCACAG
back to top
Synonyms
Publications