EWM30514.1, cds207 (CDS) Nannochloropsis gaditana

Overview
NameEWM30514.1
Unique Namecds207
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:534167..534294 -
Alignment locationCM002455.1:533875..534061 -
Alignment locationCM002455.1:533417..533710 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30514.1
ProductPDZ domain protein
Orig transcript idgnl|cribi|Naga_100013g8.9802.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:534167..534294 -
CM002455.1supercontigCM002455.1:533875..534061 -
CM002455.1supercontigCM002455.1:533417..533710 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Homology
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|585113178|gb|EWM30514.1| (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 406.757 bits (1044), Expect = 1.800e-143
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MTLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEKGKKKFFGLF 202
            MTLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEKGKKKFFGLF
Sbjct:    1 MTLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEKGKKKFFGLF 202          
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|299473663|emb|CBN78057.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 142.895 bits (359), Expect = 2.975e-39
Identity = 94/210 (44.76%), Postives = 124/210 (59.05%), Query Frame = 0
Query:    6 VAVMVVAAAFVGLTSAFVTPSLSTAS-RATTGVVSRSHSTPSRTTM-MAGGMSE------FNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEAT---LLRQLEDEEKGKKK--FFGLF 202
            +AV     AF+G ++A V    ST     +T  VSR    PSR  + MA    E       N  RAARK GP D VVEL+KP+G+VLEEDE+GNVY+ E+ P  NA R  ++  GD +T +SATFG+E WSA+G GL  +  AI++R G TVK+VLE SK A KK    +   K     K+ +E     LLR+L D+ K +KK  ++GLF
Sbjct:   12 LAVSTECLAFMGPSTASVRALGSTQGPSGSTSAVSRQ---PSRGMLSMASKKDEEAARQLSNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYIVEIVPGSNASRKKQINVGDKITFVSATFGEEIWSAQGVGLSRVQSAIRIRSGPTVKLVLETSKEAEKKMARDSARLKRLQDAKETEEDKRDRLLRELSDDTKVQKKKPWYGLF 218          
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|1072231440|gb|OEU16172.1| (hypothetical protein FRACYDRAFT_268904 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 141.739 bits (356), Expect = 7.211e-39
Identity = 95/213 (44.60%), Postives = 128/213 (60.09%), Query Frame = 0
Query:    1 MTLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNKNRAARKP---GPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEA------TLLRQLE-DEEKGKK-KFFGLF 202
            +T+S   ++ + A    +TS  +   LST + +T+ +VS S S+   TT +  G  E +  RAAR     G  D VVELQKPLG+VL +D+ GNVYV+ ++  GNA R+GKV++GD+VTM+SATFGD+ WS RG GL  ++ AI+VR G  V +V E      KK+   A   K + A K   EA      TLL +LE DE K KK KF GLF
Sbjct:    5 LTISATLLLPLVANLGSVTSFGLIAPLSTGTASTSTLVSPSCSS---TTALFMGKEEEDLLRAARSSRSAGNDDEVVELQKPLGLVLNQDDAGNVYVETVAARGNAARTGKVKEGDIVTMVSATFGDQMWSTRGVGLTRVLTAIRVRTGPRVSLVFESQNQYKKKA---ASTSKQQQAMKDAREAAQAKKDTLLSELEQDETKLKKGKFLGLF 211          
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|224007645|ref|XP_002292782.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971644|gb|EED89978.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 133.65 bits (335), Expect = 6.822e-36
Identity = 87/201 (43.28%), Postives = 117/201 (58.21%), Query Frame = 0
Query:   11 VAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSE--FNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERS-----KAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLE-DEEKGKK-KFFGLF 202
            + A FVGL  A    + ST S  +  +++     PS    MA    +      + AR     D +VEL++PLG+VL+ED+ GNV+V+ ++P GNA RSG+V++GD+VTM SATFGD+ WS RGAGL  ++ AI+VR G TV +V E +     K A       A     + A KK DE  LL +LE DE K KK KF GLF
Sbjct:    4 ITAFFVGLCVAVPCSAFSTGSSRSLSILA-----PSTALQMAADEDQDFLRWTKQARSASATDNLVELKRPLGLVLDEDDNGNVFVQTVAPRGNAARSGQVKEGDIVTMCSATFGDQMWSTRGAGLTRVLAAIRVRAGPTVSLVFESTTQRKVKGAEVAKQAAAAKEAKERAQKKRDE--LLSELEADERKLKKGKFLGLF 197          
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|1210514603|dbj|GAX26460.1| (hypothetical protein FisN_1Lh713 [Fistulifera solaris])

HSP 1 Score: 130.954 bits (328), Expect = 6.883e-35
Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 0
Query:   62 RAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLE------RSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEK--GKKKFFGLF 202
            RA+R     D VVEL +PLG++L+EDE+ NVYV+ L+P GNA RSGKV++GD++TM SATFG+E WS RG GL  ++ AI++R G+TV +V E      + +A   K + +          KK    +LLR+LE++EK    KKFFGLF
Sbjct:   45 RASRSAQDGDNVVELVRPLGLILKEDEQRNVYVETLAPKGNAARSGKVKEGDIITMCSATFGNEMWSTRGVGLSRVLAAIRLRAGSTVSLVFETPGEYKKKQALTNKEIQQREEAARAAQAKKD---SLLRELENDEKKLNPKKFFGLF 190          
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|1210525990|dbj|GAX15276.1| (hypothetical protein FisN_1Hh713 [Fistulifera solaris])

HSP 1 Score: 129.798 bits (325), Expect = 1.596e-34
Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 0
Query:   62 RAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLE------RSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEK--GKKKFFGLF 202
            RA+R     D VVEL +PLG++L+EDE+ NVYV+ L+P GNA RSGKV++GD+VTM SATFG+E WS RG GL  ++ AI++R G+TV +V E      + +A   K + +          KK    +LL++LE++EK    KKFFGLF
Sbjct:   43 RASRSAQDGDNVVELVRPLGLILKEDEQRNVYVETLAPKGNAARSGKVKEGDIVTMCSATFGNEMWSTRGVGLSRVLAAIRLRAGSTVSLVFETPGEYKKKQALTNKEIQQREEAARAAQAKKD---SLLKELENDEKKLNPKKFFGLF 188          
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|219115309|ref|XP_002178450.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410185|gb|EEC50115.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 130.183 bits (326), Expect = 2.104e-34
Identity = 76/180 (42.22%), Postives = 108/180 (60.00%), Query Frame = 0
Query:   19 TSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNK-NRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSV-----FKAPAPKAKPAPKKPDEATLLRQLEDEE 192
            T A  +  L+TA   +   ++R  S+   +    GG  +F +  RA+R     D VVEL +PLG+VL EDE+GNVYV+ ++P GNA R+GK+++GD+VTM SATFGD+ WS RG GL  ++ AI+VR G  VK+V+E    A KK        +      K A +K D  +LL +LE +E
Sbjct:   13 TIALYSTYLTTAFSLSAPTLARPQSSTVLSMATDGGDQDFMRWARASRSAQSEDNVVELLRPLGLVLNEDEQGNVYVETVAPKGNAARAGKIKEGDIVTMCSATFGDDMWSTRGVGLTRVLAAIRVRAGAKVKLVVESPAKAKKKRTETTKQIQVREEAQKAAQRKKD--SLLAELEQDE 190          
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|873232899|emb|CEM04295.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 114.775 bits (286), Expect = 1.346e-28
Identity = 69/169 (40.83%), Postives = 95/169 (56.21%), Query Frame = 0
Query:   41 SHSTPSRTTMMAGGMSEF----NKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQL---EDEEKGKKKFFGLF 202
            S   PSR T     +  F    N+ R  R  G   +++ELQKPLGI   +DE GNVYV++L+P GNA +SG ++ G+ + M+SA +GDE WS +G+G+ M+  AI+ R    V++V     A PK         K K       +A LL++L   EDE K  KKFFGLF
Sbjct:   37 SQQQPSRHTSPQTKLHAFRPMDNRAREQRTVGQNQMMIELQKPLGIEWNQDEFGNVYVRKLTPGGNADQSGAIKPGNQLLMVSAAWGDEMWSTKGSGVNMVETAIRNRAQPPVRLVF----ATPKGQTTGPAVAKTK------SDAELLKELQAEEDERKKDKKFFGLF 195          
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|397613756|gb|EJK62405.1| (hypothetical protein THAOC_16985 [Thalassiosira oceanica])

HSP 1 Score: 113.62 bits (283), Expect = 2.532e-27
Identity = 64/155 (41.29%), Postives = 96/155 (61.94%), Query Frame = 0
Query:    2 TLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNK-NRAARKPGPLDLVVELQKPLGIVLEEDEK-GNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLE 154
            + + +   + AA+ +   +AF  PS S + R TT +             MA    +F +  R +R     D +VEL++PLG++L+EDE  GNVYV+ ++P GNA R+G+V++GD++TM SATFGD+ WS RG GL  ++ AI+VR G TV +VLE
Sbjct:    6 SFTPILAALFAASSLRTCNAFA-PSTSVSVRKTTNLA------------MADDDEDFMRWARQSRSASTGDNMVELKRPLGLILKEDEDTGNVYVETVAPRGNAARTGQVKEGDIITMCSATFGDQMWSCRGVGLTRVLAAIRVRAGPTVSLVLE 147          
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|546320305|ref|XP_005717244.1| (unnamed protein product [Chondrus crispus] >gi|507113822|emb|CDF37425.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 108.997 bits (271), Expect = 1.068e-25
Identity = 65/160 (40.62%), Postives = 92/160 (57.50%), Query Frame = 0
Query:    9 MVVAAAFVGLTSAFVTPSLSTAS-----------RATTGVVSRSHSTPSRTTMMAG---GMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLE 154
            MV  A  +G +SA  TP+  TAS           RA T  +SR    P R     G    + +  K+RA R     D  V +QKPLG+VLEE + G V+V E+ P GNA  SG++ +GD++  +SATFG+E WS RG GL  +M++I++R G+ V +V+E
Sbjct:    1 MVAFANALG-SSALFTPASLTASSSFCGCTVSHRRAPTARLSRRSFLPGRIVCEEGFNYNIYQDGKDRAKRMVDSSDRSVTVQKPLGLVLEEGQDGMVFVAEMDPEGNAADSGEINEGDILVAVSATFGEEVWSTRGVGLDRVMKSIRIRAGDFVTLVVE 159          
The following BLAST results are available for this feature:
BLAST of EWM30514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113178|gb|EWM30514.1|1.800e-143100.00PDZ domain protein [Nannochloropsis gaditana][more]
gi|299473663|emb|CBN78057.1|2.975e-3944.76conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072231440|gb|OEU16172.1|7.211e-3944.60hypothetical protein FRACYDRAFT_268904 [Fragilario... [more]
gi|224007645|ref|XP_002292782.1|6.822e-3643.28predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210514603|dbj|GAX26460.1|6.883e-3547.65hypothetical protein FisN_1Lh713 [Fistulifera sola... [more]
gi|1210525990|dbj|GAX15276.1|1.596e-3447.65hypothetical protein FisN_1Hh713 [Fistulifera sola... [more]
gi|219115309|ref|XP_002178450.1|2.104e-3442.22predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|873232899|emb|CEM04295.1|1.346e-2840.83unnamed protein product [Vitrella brassicaformis C... [more]
gi|397613756|gb|EJK62405.1|2.532e-2741.29hypothetical protein THAOC_16985 [Thalassiosira oc... [more]
gi|546320305|ref|XP_005717244.1|1.068e-2540.63unnamed protein product [Chondrus crispus] >gi|507... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna207rna207Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications