EWM30514.1, cds207 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|585113178|gb|EWM30514.1| (PDZ domain protein [Nannochloropsis gaditana]) HSP 1 Score: 406.757 bits (1044), Expect = 1.800e-143 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 Query: 1 MTLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEKGKKKFFGLF 202 MTLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEKGKKKFFGLF Sbjct: 1 MTLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEKGKKKFFGLF 202
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|299473663|emb|CBN78057.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 142.895 bits (359), Expect = 2.975e-39 Identity = 94/210 (44.76%), Postives = 124/210 (59.05%), Query Frame = 0 Query: 6 VAVMVVAAAFVGLTSAFVTPSLSTAS-RATTGVVSRSHSTPSRTTM-MAGGMSE------FNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEAT---LLRQLEDEEKGKKK--FFGLF 202 +AV AF+G ++A V ST +T VSR PSR + MA E N RAARK GP D VVEL+KP+G+VLEEDE+GNVY+ E+ P NA R ++ GD +T +SATFG+E WSA+G GL + AI++R G TVK+VLE SK A KK + K K+ +E LLR+L D+ K +KK ++GLF Sbjct: 12 LAVSTECLAFMGPSTASVRALGSTQGPSGSTSAVSRQ---PSRGMLSMASKKDEEAARQLSNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYIVEIVPGSNASRKKQINVGDKITFVSATFGEEIWSAQGVGLSRVQSAIRIRSGPTVKLVLETSKEAEKKMARDSARLKRLQDAKETEEDKRDRLLRELSDDTKVQKKKPWYGLF 218
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|1072231440|gb|OEU16172.1| (hypothetical protein FRACYDRAFT_268904 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 141.739 bits (356), Expect = 7.211e-39 Identity = 95/213 (44.60%), Postives = 128/213 (60.09%), Query Frame = 0 Query: 1 MTLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNKNRAARKP---GPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEA------TLLRQLE-DEEKGKK-KFFGLF 202 +T+S ++ + A +TS + LST + +T+ +VS S S+ TT + G E + RAAR G D VVELQKPLG+VL +D+ GNVYV+ ++ GNA R+GKV++GD+VTM+SATFGD+ WS RG GL ++ AI+VR G V +V E KK+ A K + A K EA TLL +LE DE K KK KF GLF Sbjct: 5 LTISATLLLPLVANLGSVTSFGLIAPLSTGTASTSTLVSPSCSS---TTALFMGKEEEDLLRAARSSRSAGNDDEVVELQKPLGLVLNQDDAGNVYVETVAARGNAARTGKVKEGDIVTMVSATFGDQMWSTRGVGLTRVLTAIRVRTGPRVSLVFESQNQYKKKA---ASTSKQQQAMKDAREAAQAKKDTLLSELEQDETKLKKGKFLGLF 211
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|224007645|ref|XP_002292782.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971644|gb|EED89978.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 133.65 bits (335), Expect = 6.822e-36 Identity = 87/201 (43.28%), Postives = 117/201 (58.21%), Query Frame = 0 Query: 11 VAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSE--FNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERS-----KAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLE-DEEKGKK-KFFGLF 202 + A FVGL A + ST S + +++ PS MA + + AR D +VEL++PLG+VL+ED+ GNV+V+ ++P GNA RSG+V++GD+VTM SATFGD+ WS RGAGL ++ AI+VR G TV +V E + K A A + A KK DE LL +LE DE K KK KF GLF Sbjct: 4 ITAFFVGLCVAVPCSAFSTGSSRSLSILA-----PSTALQMAADEDQDFLRWTKQARSASATDNLVELKRPLGLVLDEDDNGNVFVQTVAPRGNAARSGQVKEGDIVTMCSATFGDQMWSTRGAGLTRVLAAIRVRAGPTVSLVFESTTQRKVKGAEVAKQAAAAKEAKERAQKKRDE--LLSELEADERKLKKGKFLGLF 197
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|1210514603|dbj|GAX26460.1| (hypothetical protein FisN_1Lh713 [Fistulifera solaris]) HSP 1 Score: 130.954 bits (328), Expect = 6.883e-35 Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 0 Query: 62 RAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLE------RSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEK--GKKKFFGLF 202 RA+R D VVEL +PLG++L+EDE+ NVYV+ L+P GNA RSGKV++GD++TM SATFG+E WS RG GL ++ AI++R G+TV +V E + +A K + + KK +LLR+LE++EK KKFFGLF Sbjct: 45 RASRSAQDGDNVVELVRPLGLILKEDEQRNVYVETLAPKGNAARSGKVKEGDIITMCSATFGNEMWSTRGVGLSRVLAAIRLRAGSTVSLVFETPGEYKKKQALTNKEIQQREEAARAAQAKKD---SLLRELENDEKKLNPKKFFGLF 190
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|1210525990|dbj|GAX15276.1| (hypothetical protein FisN_1Hh713 [Fistulifera solaris]) HSP 1 Score: 129.798 bits (325), Expect = 1.596e-34 Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 0 Query: 62 RAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLE------RSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEK--GKKKFFGLF 202 RA+R D VVEL +PLG++L+EDE+ NVYV+ L+P GNA RSGKV++GD+VTM SATFG+E WS RG GL ++ AI++R G+TV +V E + +A K + + KK +LL++LE++EK KKFFGLF Sbjct: 43 RASRSAQDGDNVVELVRPLGLILKEDEQRNVYVETLAPKGNAARSGKVKEGDIVTMCSATFGNEMWSTRGVGLSRVLAAIRLRAGSTVSLVFETPGEYKKKQALTNKEIQQREEAARAAQAKKD---SLLKELENDEKKLNPKKFFGLF 188
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|219115309|ref|XP_002178450.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410185|gb|EEC50115.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 130.183 bits (326), Expect = 2.104e-34 Identity = 76/180 (42.22%), Postives = 108/180 (60.00%), Query Frame = 0 Query: 19 TSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNK-NRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSV-----FKAPAPKAKPAPKKPDEATLLRQLEDEE 192 T A + L+TA + ++R S+ + GG +F + RA+R D VVEL +PLG+VL EDE+GNVYV+ ++P GNA R+GK+++GD+VTM SATFGD+ WS RG GL ++ AI+VR G VK+V+E A KK + K A +K D +LL +LE +E Sbjct: 13 TIALYSTYLTTAFSLSAPTLARPQSSTVLSMATDGGDQDFMRWARASRSAQSEDNVVELLRPLGLVLNEDEQGNVYVETVAPKGNAARAGKIKEGDIVTMCSATFGDDMWSTRGVGLTRVLAAIRVRAGAKVKLVVESPAKAKKKRTETTKQIQVREEAQKAAQRKKD--SLLAELEQDE 190
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|873232899|emb|CEM04295.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 114.775 bits (286), Expect = 1.346e-28 Identity = 69/169 (40.83%), Postives = 95/169 (56.21%), Query Frame = 0 Query: 41 SHSTPSRTTMMAGGMSEF----NKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDEATLLRQL---EDEEKGKKKFFGLF 202 S PSR T + F N+ R R G +++ELQKPLGI +DE GNVYV++L+P GNA +SG ++ G+ + M+SA +GDE WS +G+G+ M+ AI+ R V++V A PK K K +A LL++L EDE K KKFFGLF Sbjct: 37 SQQQPSRHTSPQTKLHAFRPMDNRAREQRTVGQNQMMIELQKPLGIEWNQDEFGNVYVRKLTPGGNADQSGAIKPGNQLLMVSAAWGDEMWSTKGSGVNMVETAIRNRAQPPVRLVF----ATPKGQTTGPAVAKTK------SDAELLKELQAEEDERKKDKKFFGLF 195
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|397613756|gb|EJK62405.1| (hypothetical protein THAOC_16985 [Thalassiosira oceanica]) HSP 1 Score: 113.62 bits (283), Expect = 2.532e-27 Identity = 64/155 (41.29%), Postives = 96/155 (61.94%), Query Frame = 0 Query: 2 TLSKVAVMVVAAAFVGLTSAFVTPSLSTASRATTGVVSRSHSTPSRTTMMAGGMSEFNK-NRAARKPGPLDLVVELQKPLGIVLEEDEK-GNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLE 154 + + + + AA+ + +AF PS S + R TT + MA +F + R +R D +VEL++PLG++L+EDE GNVYV+ ++P GNA R+G+V++GD++TM SATFGD+ WS RG GL ++ AI+VR G TV +VLE Sbjct: 6 SFTPILAALFAASSLRTCNAFA-PSTSVSVRKTTNLA------------MADDDEDFMRWARQSRSASTGDNMVELKRPLGLILKEDEDTGNVYVETVAPRGNAARTGQVKEGDIITMCSATFGDQMWSCRGVGLTRVLAAIRVRAGPTVSLVLE 147
BLAST of EWM30514.1 vs. NCBI_GenBank
Match: gi|546320305|ref|XP_005717244.1| (unnamed protein product [Chondrus crispus] >gi|507113822|emb|CDF37425.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 108.997 bits (271), Expect = 1.068e-25 Identity = 65/160 (40.62%), Postives = 92/160 (57.50%), Query Frame = 0 Query: 9 MVVAAAFVGLTSAFVTPSLSTAS-----------RATTGVVSRSHSTPSRTTMMAG---GMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLE 154 MV A +G +SA TP+ TAS RA T +SR P R G + + K+RA R D V +QKPLG+VLEE + G V+V E+ P GNA SG++ +GD++ +SATFG+E WS RG GL +M++I++R G+ V +V+E Sbjct: 1 MVAFANALG-SSALFTPASLTASSSFCGCTVSHRRAPTARLSRRSFLPGRIVCEEGFNYNIYQDGKDRAKRMVDSSDRSVTVQKPLGLVLEEGQDGMVFVAEMDPEGNAADSGEINEGDILVAVSATFGEEVWSTRGVGLDRVMKSIRIRAGDFVTLVVE 159 The following BLAST results are available for this feature:
BLAST of EWM30514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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