rna2068, rna2068 (mRNA) Nannochloropsis gaditana

Overview
Namerna2068
Unique Namerna2068
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2938
Alignment locationCM002458.1:816001..816492 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g95.668.mrna
Orig protein idgnl|cribi|Naga_100009g95.668
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:816001..816492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g95gene1978Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2068rna2068-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28625.1cds2060Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2068 ID=rna2068|Name=rna2068|organism=Nannochloropsis gaditana|type=mRNA|length=2938bp
GAGAATAAAGCAGACTGAGAGTGGTTGACTCATCGTTGGATTTGATTCGC
AGCATCATAAGAGTAAAAATCGTTTTAGTGTCTTGATGCATCGACAGAGG
CTTGTCTACTGATGATAGGCTGCTCCTCCGAACACGGAGCTGCTTTGACT
TAATATCCGGGTTATGCCTTACTCTCCCGCCACGGCAAATAAATTTTGTT
GCCTTACAAAAGTACTGAAAATCATCGAAAGGTATTGCATTCGAAAGTAT
TTTCCTGTCCTCTCGTTTTTCCGCGGCGTTTTTCATGGGGTTCCCTGACC
TTCAAGTGACATGTCCGCCGACCCCTTCCTCCATTAGGCTACAACGAATG
CGAAGTTCGTTTTGCGATCGTAAATATAATTACCAAATTAATGTTATTGC
TGTGGCACAGGAAAACTGTGCGAATGGATCAGGTTTCAATTTGCCTGTAA
AATTATTAATCCGACGTGTTCTGTGACCTTTAATCGCTCACGCAGCCACG
GGTTGCCCAGTCCCCTACCTCTCGTTGCCTTGCTTTGTCAAATTGCATTC
GACTCTCTGCAATTTTCCTCTTTTTTGGGATATGAATCTAATACGACAGG
ATAAATAAGCACCTCGCGTGACGTGGGAACAATAGAATGCTGCATCCTGT
CGAAGCTGCACCGGGAAAGCTGAAGAAGAAGAAGCGTCTCCTGAAAGGGG
ACAAATGGGGTTCAAAGGTGTCGAAAAGGGCGGCTCCATCACCGTCTTGG
CCGTCAACTTCCGGACTGAAGAAGGAAAAAGGGGGTTTACTTGCCGGTCG
CGGTCCTTTGTCGAGTGGGAAAGTTGCGGGTCCTAGCCAGGGCAAGAGCG
AGGCCTTCGATGCAGACACCTGGGAGGCTTGTTGGCAGGGGATTGAACGA
CGTGAAGCAGTACGAGACGGAGTGGCATGGCTGCTAAAGCACGCGGCATC
TAACAGTAACAGTGAGAAGTGCGAGGGCCTGAGGACTCTTCCGGCGGTCC
TGGACATGGTTCGTCTAACCCGGGACCCCGTGAGACAGGAGGTGTTGGAA
GCAGCACACCTGCCTCTGGAAAAGTGGAAGGTGGAAAATGCACAAGAGCA
GTGGGGCCCCTCCCAAGTCCGCCAAGGCAATGGCAGCGGCGGAGCAGCCG
GTAGTCTCGAGGGAGGGCGCTGCGCCCACCAGGAGGACATTGGCAAGGCC
ACAACGCAGCAGACTTTAATTGTGGCAGTCCGTCGCATTTTTTCTTTGGA
ACGAACCGGGATGTATGCTCAGGAGGAATCCAAGCGAGCCCTGTTGAAAG
CCTTCGTCAGCGTGAGAGAGGGGAGCGAGCGAGCATCCTCGTCTCCTGTC
CCGGAGGCTGCCCACCGGTCCACATGGAGCATAGAAGACTATCTAGGCTG
GAACCCGCTCCATGCCCCCCCCCCCGCGTCGCTCCGGGACCCCTTCGATC
CGACGGGTCCCCGGCTCTCCCAACAGCGCGTGTTGGCGCTGAGCGTGGAG
TGGATGATGGTGCTGGAGCTCTCAGGCCTGGTGGCGGACAGGAGCGAAGG
GGAGGAGGGGCGCCGGCGTGGAGGGAGAGGGAGAGGGACGGGAGGGAGAG
CGGAACCCGAAGAAAGGGAAGAAGACAACGGGGCTGTTGCCGTGGAAGAC
GGAGGCGCGGCCTCTCCCAAGGCCGCTACCATGGAGGAATCCGAGCCGCA
GACGGCAGCCTTGGCCGAGGAAGGTCGACTCGTCCATGTCCTCAAGTGGC
TGCCCTGTGTTCGCCCTTACCGGGGCCCCGCCCAAGTGGAGGCTGCCGTG
TACCGCGACCAAGTCTGCCTGGCGACCAGCGTGGTGTGGGCCCTGAGTCG
GGGCGGGGAGCTCCGCATTCCGGCCCTCTTGCTCCCGCACGAGTACTTCT
TCTTGCGCGAACACTTGGCTGTGCAGCTTCTTCAGAGGGACGTCCTGTCC
GTGGGCCGGACCATCGATGCCCTCCGTGTGCTCGGGAGCCACGAGGAGAA
CCCCATGATCCGCGCCGGCATGACCTACTTGATGCGTAACCAGGCCCAGG
CGGGAAATTGGCCGGCGGCCACGACCGGCGCGCCCGTGACGGAGGAGGAG
GACAGAAATGCCAGGCTAGGGGGATACGGCGGTCGAGGCACAGGCCGGGA
TCGATTCGTGGCCCCTACCCTGGCGGCCACGCGCGCGCTGCTCGTGCGGG
AGTTCAACGGTTTCGGACCGCTTCCTCTCGAGGTCCTGGACCTGCTGCTG
GCGTGGCAGAAGGAGGACGCAGACCCTCTCCCGGGCGACCTCCCGCCGCA
GGGAGAGGACGGGAGCAGCGTCTTCCTGCTGCCCGACGGGACGTGGGACC
GCCGGGTCAAGGATTTGGAGCGCATCGTCACAAAAATAAAGAAGCAATTC
AAGAAGAGACAGGCTGGCGCCGCTGCCGTCCGTGCGGCGTCTGCAACTCC
TTCTGCTGCCTCTACCCCCGCTCCTATGGTCCCTGCCTCTGGAGCCCTTA
GGATGGCGGACACAGCCCATCCACTAGCGGCCCAAGGGAGTCAGGAGGCC
GCCCCCCTGGACGAGCGTGCGAGGATGGAAGCCGCCGTGCTCTCCGAAGC
GGACCAAGCCGGCGTGGCGCGGGTCAATGAGCTGGGTAGACAGATTGAGG
GGGCGAAGGCCAAGCAGGATTGGACGCGGGTGCGGGAGGCGCTGCTGACC
CTGGAGGCTGAGCCCATGTCTCTGACCATCTTAACCGCCACGTCGATCGG
GCGAGTAGTGAACAAGCTGAAGAAGGCGGAGGACGCGGGCGTGGCGCTCC
TAGGGAAGGGCCTGGTGAAGAAGTGGAAGGCTTTGGTGGAGGGCTGAGGG
GCCGAAGAGGGGGGAAGGGGACAGACCAGATCCTCGGGGGCAAGAGCCAT
GCTCGACAAAGCAAGTAATAACTTTGATAGGAAATCGC
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protein sequence of rna2068

>rna2068-protein ID=rna2068-protein|Name=rna2068|organism=Nannochloropsis gaditana|type=polypeptide|length=76bp
MDARPRLRALARVQATSPGLEIPTYTAPKVIVLSFTQGYHPSRYKVHMIC
MLTVHLLNICEPHCNYKGLFLNILQI
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mRNA from alignment at CM002458.1:816001..816492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2068 ID=rna2068|Name=rna2068|organism=Nannochloropsis gaditana|type=mRNA|length=492bp|location=Sequence derived from alignment at CM002458.1:816001..816492- (Nannochloropsis gaditana)
ATGGACGCACGGTTTACAAGGCATGGTTGTGATCCAGGGGAACGACAGCT
GGGGTAGTCAGAGTGTATTCCCCTGTGCTGCTTTCCTAACCCGCGAGACG
GCGACGCGGAGTCGGGAGGGGTTGCAAGGAGGTATCGACGCCGAGGCCAC
AGGCACGGTTTGGGCCCAAGCCCAGACTTCTCAAGGACTTGGAAAGCCTT
CGTGTCACGTACGTCCGTTCGAGAGCTAGCGTTTGGAGGTTTTGTCGGTC
CACGGTCAAGTGTTTTTGACAGGCCGCGGCTGCGTGCTTTAGCAAGAGTC
CAAGCAACCTCCCCTGGCCTTGAGATACCTACATATACGGCTCCGAAAGT
TATCGTTCTCTCCTTTACACAAGGCTATCATCCATCCCGGTACAAGGTCC
ATATGATTTGTATGTTGACGGTTCATCTGCTCAACATTTGCGAGCCACAT
TGCAACTATAAAGGTCTTTTCCTTAATATCCTGCAAATATGA
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Coding sequence (CDS) from alignment at CM002458.1:816001..816492-

>rna2068 ID=rna2068|Name=rna2068|organism=Nannochloropsis gaditana|type=CDS|length=462bp|location=Sequence derived from alignment at CM002458.1:816001..816492- (Nannochloropsis gaditana)
GCCGCGGCTGCGTGCTTTAGCAAGAGTCCAAGCAACCTCCCCTGGCCTTG
AGATACCTACATATACGGCTCCGAAAGTTATCGTTCTCTCCTTTACACAA
GGCTATCATCCATCCCGGTACAAGGTCCATATGATTTGTATGTTGACGGT
TCATCTGCTCAACATTTGCGAGCCACATTGCAACTATAAAGGTCTTTTCC
TTAATATCCTGCAAATATGAATGGACGCACGGCCGCGGCTGCGTGCTTTA
GCAAGAGTCCAAGCAACCTCCCCTGGCCTTGAGATACCTACATATACGGC
TCCGAAAGTTATCGTTCTCTCCTTTACACAAGGCTATCATCCATCCCGGT
ACAAGGTCCATATGATTTGTATGTTGACGGTTCATCTGCTCAACATTTGC
GAGCCACATTGCAACTATAAAGGTCTTTTCCTTAATATCCTGCAAATATG
AATGGACGCACG
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Synonyms
Publications