rna2066, rna2066 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2066
Unique Name	rna2066
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1746
Alignment location	CM002458.1:808831..810578 +

Link to JBrowse

Properties


Property Name	Value
Product	tRNA methyltransferase complex GCD14 subunit
Orig transcript id	gnl\|cribi\|Naga_100009g97.664.mrna
Orig protein id	gnl\|cribi\|Naga_100009g97.664
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:808831..810578 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g97	gene1976	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2066	rna2066-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28621.1	cds2058	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:808831..810578+
coding sequence from alignment at CM002458.1:808831..810578+

mRNA sequence

>rna2066 ID=rna2066|Name=rna2066|organism=Nannochloropsis gaditana|type=mRNA|length=1746bp
ATGGACAGGTTATGCGTCCTCGCTGACCTCGCTAGCGCCTCGCTTGGGAA
TCGGTTGCGCCCCGACGTGCATGCAAAACCTCCGCTTCGTCCCCTGACAC
CGGATGGCGTCCGGCACGGTTTCCACATTACACAGGGAGCGAGGAAGAAA
GGGTTGGGCAGTGTGCGAGAACCCCGTGCACCGTTCGCAGACGCTCTGGG
CACATTTCTGCAAGGACGAGAGGGAGGGCGTAAGTTGAGGGAGAACGGTC
TTGTTCTTGTTACAACGACAATGGCTCGCCCTGAAAATCGTGCCGGCCTT
CTTCGGACGGTCGCGCTGGGTGCTTTTGTTAGCACTTTATCTTGTACGAA
AGCATTTATAATTCCTCCGGGCACAAGCCCTTGGCTTTCTGTGGTGCATG
CGCCGGCATTCGACAGCGAGGAGAGAAGGCCAGCAGGCGGAGCACCCGCG
CTTTCTGTTCGTCTCGCCGCTGCGAAAAAAAAGACAACCGGGGGAGGAGC
GAGCCCTCCGTCTTCCAAGACATCACCCGCGCTCTCTGTTAGCACGAGCA
AGAAAAAATCTCGCAAGGACGAGGGGCAGGCCCAGCGTCATGCAAAGCAC
ATGAAGAAGCCCACGGACAGCGCCACTCGTGCGGATTTCGGTCTGGGCGG
TCCAGACTTCGAGATGGAGCTACTTCCGCCCACTGACAAGAACGCCGGCC
CCAAGACGGCGACCAGCAGGAAGGGCGTTAGCGGCAGCGTCGGGACCGTG
GGGGGGGACGAAGACCACACCACTGACCATCATCTCCGACTGTTGAGACA
GACGGGCAAATACCCTGTCCTTGTCTTGAACACGGACGCCCAACCGCTCA
GTTACCTCCCCCTGTCGATTATCCGGTGGCAGGAGGCCATCAAAGCCATT
TTCCTGGAGCGAGTCACCGTCCTCGCCTACTACGATTCTTACATTCAATC
CACTGCCGGCCCCTGGCAGCTCCCTTCCGTTGTATGCCTCAAGCAGTACC
AGAAGGGTTGCCGGGAGCGCCCCCCCCCCTTGAATCGTCGGAACATCTAC
ATCCGAGACCGGTATTCTTGCGCCTACTGCAGCCAGCGCCTGAGCGCACA
CGATTTGACCCTCGACCACGTCATGCCTCGCTCCAAGGGTGGGAAGGGTA
GCTGGGACAATCTTGTTACATGCTGCCGGCAATGCAATCGACGGAAGGGG
AAGCGCACGGTCAAGGAGCTCAAAGAAATTGGAATGGTGCTTTTGAACCC
GCCGCGGAAGCCGAAAATGTCAGAGCTGCAGCGGCAAGCCCGCTTGTACC
GGACTGCGGCTGGAGTCTTCCCGCACGAGAGCTGGGAAACATATCTGGGA
GGGCCGCCGGAAACCGAGCTGTAGAAGGGGGCTAAGAGAGAAAGAGCCAT
GTTTGTGGGAATTTATGAACAAGGAAACGCAGAGGCAATCCAAAGAAAGA
CCATGGAGGAGCTGTAGATATGTAGGAGGGGTGTGTTAATGGTCTTGCTG
CGCCCAGTAAGGGCGCCCTCAGATGTCATTCTAGAGTCCGAGCATTTAGC
GTGGCGGATGAAGGATGAACAAATAATGAACATCCTATGCCAACGTGAAT
GGATGCACGATTATCTCACGGGGCTGCCAAAATCGAGTTCATGTTCGCGA
TTAGAAACGAGTGACGGACCCAACCAGCCAAAGCTTCCGGTGCCGAAGGG
CCATAAACTAGACAGGACGAAAAACGAACTGACGGAATCAGAATAG

protein sequence of rna2066

>rna2066-protein ID=rna2066-protein|Name=rna2066|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MDFALVQEWEREESQRGTPSTKPDGRVVCTATKRRRPFQAGDMVVVMERH
DSYSHVYLEPGGMFQNRLGHFHHDDIIGKHVGAKVMSRSAGGRFIRLLLP
SPELWTMSIKQRTQIVQDLDQSMVVFKLGLRPGMRVLESGTGSGAMSHAI
LRSISPHGHLHTFEFNEARAIDAQVDFERNRVSHLVTVMHGDICQDLSLS
DEESTIVCTSAHMETESDGKDPLGEHNGLAPNGTAAASQPEAPPPLAHPP
AVSVAPVARTLRGRIDAVFLDVPSPWLAIPLAAAVLKANARIATYSPCFE
QVFKTCEALREHNFHSIRTMEVRHKQFELRRTCMPHLDFGDGDSVGVGED
LGGAAEKGNGVRGDDQNTAHARETGPKKSESEGMEAWRSKRKHREAEGGK
DARPFAKARPVMRGHTAFLTFAVAGLHPPKSLGPGAVGPTVPAPWIPTSG
PPAPAPDPVDELAAEA

mRNA from alignment at CM002458.1:808831..810578+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2066 ID=rna2066|Name=rna2066|organism=Nannochloropsis gaditana|type=mRNA|length=1748bp|location=Sequence derived from alignment at CM002458.1:808831..810578+ (Nannochloropsis gaditana)
CCGTCCGCACTTGTtgaccctctccctcacgcGCACATCCATCATCACAT
CGTGGAATGACAGTCAAGGGGGGCTTGGAGTCAGTGCGTGCCAACTTGCC
GAGCCGACGGGATCATTCACCATCAGGCACGAACATTCGTGGCGGCAAAA
ATATCTCAGATCCGGCCTAGGATGGATTTTGCTCTGGTTCAAGaatggga
gcgggaggagtCGCAGCGTGGCACGCCCTCGACCAAACCTGATGGGAGAG
TCGTGTGCACCGCAACAAAAAGAAGACGGCCATTCCAAGCAGGAGACATG
GTCGTTGTAATGGAACGGCATGACAGTTATTCACACGTGTACCTTGAGCC
AGGGGGCATGTTTCAGAATCGTTTAGGGCATTTCCACCACGACGACATCA
TCGGGAAACACGTTGGCGCAAAGGTCATGTCCAGGTCCGCAGGTGGGCGA
TTTATACGCTTGCTATTGCCCTCTCCGGAGCTGTGGACGATGAGCATCAA
GCAGCGCACACAGATTGTTCAAGACCTGGATCAGAGTATGGTTGTGTTTA
AGCTTGGTCTGCGGCCAGGCATGCGAGTCCTGGAGTCTGGAACGGGCTCT
GGGGCAATGTCACATGCAATTTTGCGCAGTATCAGTCCACATGGGCACTT
ACACACATTTGAATTCAATGAGGCACGAGCGATAGACGCACAAGTGGATT
TCGAGAGGAATCGAGTGAGCCATTTGGTGACGGTGATGCACGGAGACATA
TGCCAGGATTTGAGTCTGTCAGATGAAGAGAGCACTATTGTATGTACCTC
TGCGCACATGGAGACGGAAAGTGACGGTAAGGATCCACTGGGTGAGCATA
ATGGCCTCGCCCCGAACGGGACAGCCGCTGCCTCCCAACCCgaggctccc
ccccccctcgcccatccTCCCGCGGTTTCCGTCGCTCCAGTTGCACGGAC
TCTACGTGGTCGGATAGACGCCGTCTTTCTGGATGTGCCGAGTCCCTGGC
TGGCCATTCCCCTGGCCGCAGCAGTCTTGAAGGCGAACGCGCGCATCGCC
ACGTATTCGCCATGTTTCGAGCAGGTTTTCAAGACTTGCGAGGCCCTGCG
GGAGCATAACTTTCATTCCATTCGTACCATGGAGGTACGGCACAAGCAGT
TTGAGCTCAGGCGGACGTGCATGCCGCATTTGGATTTCGGGGACGGGGAT
AGcgtcggggtgggggaggatcTGGGTGGGGCCGCGGAGAAGGGAAATGG
GGTGCGAGGGGATGATCAGAACACCGCTCATGCCAGAGAGACAGGACCGA
AAAAGTCCGAAAGTGAAGGCATGGAAGCATGGCGGAGTAAACGGAAGCAc
agagaggcggagggcgggaaagatgCCCGCCCGTTCGCGAAAGCGCGTCC
CGTCATGCGGGGCCACACAGCCTTCCTGACCTTCGCCGTCGCCGGTCTTC
ACCCACCCAAGAGCCTAGGCCCGGGCGCGGTGGGACCGACCGTCCCTGCT
CCCTGGATACCGACCTCGGGGCCGCCAGCACCGGCTCCGGACCCGGTCGA
CGAGCTGGCCGCTGAGGCTTGAGCAGAAGGAATCGATCTCCTCTATGTAA
CAAAAAAAACAGCAGAAGAAATCGATCTCCTCTATGTGACAAACGAAACA
GCAGAAGGAATCGATCTCCCCTATGTGACAAAAGAAACAGCAGAAGGAAT
CCATCTCCTCTATGTGACAAAAGAAACCAAATAACAAACAGGCGATTT

Coding sequence (CDS) from alignment at CM002458.1:808831..810578+

>rna2066 ID=rna2066|Name=rna2066|organism=Nannochloropsis gaditana|type=CDS|length=1401bp|location=Sequence derived from alignment at CM002458.1:808831..810578+ (Nannochloropsis gaditana)
ATGGATTTTGCTCTGGTTCAAGaatgggagcgggaggagtCGCAGCGTGG
CACGCCCTCGACCAAACCTGATGGGAGAGTCGTGTGCACCGCAACAAAAA
GAAGACGGCCATTCCAAGCAGGAGACATGGTCGTTGTAATGGAACGGCAT
GACAGTTATTCACACGTGTACCTTGAGCCAGGGGGCATGTTTCAGAATCG
TTTAGGGCATTTCCACCACGACGACATCATCGGGAAACACGTTGGCGCAA
AGGTCATGTCCAGGTCCGCAGGTGGGCGATTTATACGCTTGCTATTGCCC
TCTCCGGAGCTGTGGACGATGAGCATCAAGCAGCGCACACAGATTGTTCA
AGACCTGGATCAGAGTATGGTTGTGTTTAAGCTTGGTCTGCGGCCAGGCA
TGCGAGTCCTGGAGTCTGGAACGGGCTCTGGGGCAATGTCACATGCAATT
TTGCGCAGTATCAGTCCACATGGGCACTTACACACATTTGAATTCAATGA
GGCACGAGCGATAGACGCACAAGTGGATTTCGAGAGGAATCGAGTGAGCC
ATTTGGTGACGGTGATGCACGGAGACATATGCCAGGATTTGAGTCTGTCA
GATGAAGAGAGCACTATTGTATGTACCTCTGCGCACATGGAGACGGAAAG
TGACGGTAAGGATCCACTGGGTGAGCATAATGGCCTCGCCCCGAACGGGA
CAGCCGCTGCCTCCCAACCCgaggctcccccccccctcgcccatccTCCC
GCGGTTTCCGTCGCTCCAGTTGCACGGACTCTACGTGGTCGGATAGACGC
CGTCTTTCTGGATGTGCCGAGTCCCTGGCTGGCCATTCCCCTGGCCGCAG
CAGTCTTGAAGGCGAACGCGCGCATCGCCACGTATTCGCCATGTTTCGAG
CAGGTTTTCAAGACTTGCGAGGCCCTGCGGGAGCATAACTTTCATTCCAT
TCGTACCATGGAGGTACGGCACAAGCAGTTTGAGCTCAGGCGGACGTGCA
TGCCGCATTTGGATTTCGGGGACGGGGATAGcgtcggggtgggggaggat
cTGGGTGGGGCCGCGGAGAAGGGAAATGGGGTGCGAGGGGATGATCAGAA
CACCGCTCATGCCAGAGAGACAGGACCGAAAAAGTCCGAAAGTGAAGGCA
TGGAAGCATGGCGGAGTAAACGGAAGCAcagagaggcggagggcgggaaa
gatgCCCGCCCGTTCGCGAAAGCGCGTCCCGTCATGCGGGGCCACACAGC
CTTCCTGACCTTCGCCGTCGCCGGTCTTCACCCACCCAAGAGCCTAGGCC
CGGGCGCGGTGGGACCGACCGTCCCTGCTCCCTGGATACCGACCTCGGGG
CCGCCAGCACCGGCTCCGGACCCGGTCGACGAGCTGGCCGCTGAGGCTTG
A

Synonyms

Publications