rna2063, rna2063 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2063
Unique Name	rna2063
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2671
Alignment location	CM002458.1:798973..800927 +

Link to JBrowse

Properties


Property Name	Value
Product	diphthamide biosynthesis
Orig transcript id	gnl\|cribi\|Naga_100009g101.595.mrna
Orig protein id	gnl\|cribi\|Naga_100009g101.595
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:798973..800927 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g101	gene1973	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2063	rna2063-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28552.1	cds2055	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:798973..800927+
coding sequence from alignment at CM002458.1:798973..800927+

mRNA sequence

>rna2063 ID=rna2063|Name=rna2063|organism=Nannochloropsis gaditana|type=mRNA|length=2671bp
AAAACAGGGTCTTGAAAGTCGTGCTACAGATTTACTTTGCTGCATTGCTG
GCTCCGCGTATGAGCCTGTGACATGCGGCGTGCTCGGCCCCGACCGCCCC
ACTCTCGTAGCCCCGCCTTGTCCCTCCTGCCGCTGCTGCTGCTTTCCCGT
AATTTCACAGCATTGATCACGGCTAGTAGAATAAGAATTAGCGGTGGTCC
ATTACGGCAGCGGCTAGCTGCTTGGGGGTCGCCTTTAAGTCCATCTCCTC
CACCAATCCGGTACTCCCGCTCTCTGGGCGCCCTCTCTCGCCCCTCGTGC
CTGCTATTCCCACATCGCACTCCATTGGTGGCGGTGGCCATGCGAAAGGG
CGCAGATGACAGGGAAGACTGTCATGGCTTGCCTCAGACCGTAGACGTTG
GCAGCAAGCCGCTAAGAGACCGTAAAAAGAGGCGCATGGCCTTGGTAATC
GGGTATGTAGGTACAAAGTATTCTGGCTTGCAAAAATCCGAACCAGGCCC
GGGCGAGGCAGAAGTCATTACGATCGAGTCAGTATTGGAAAAAGCGCTGT
TTGATGCGGGCTACATACGGGAAAGCAATTTCGGGGATCTGGATAAGATT
GGCTGGGCGCGTTGCTCTCGGACGGACAAGGGCGTGCATGCGGCGCGGAA
TGTGGTCTCGGCCAAGCTGGAGCTATGGGTAGATGACATGGAAGGCGATA
GCCCTAACTGGAGCGAGCGAGCCGTCAAAGAGATAAATGCCTGCCTGCCT
GATGACATCCGCGTGCACAGTTGTGCCAAAGCAACCAAGTCGTTCAGACC
GCGAGACGCCGTGAGCTTTCGAGAATACGTGTACATCGTCCCTCTCGAGC
TCCTCCGTCCGTTCCCAGGCACCGGTCGAGCCGTCGCAGACGAAAGCTCA
GAGGCTTTAATCGCCCGTTTCTGCGACTTGCTCGTGCGGTTCCAGGGCAC
GCATAATTTCCACAATTTCACCAAAATAAAGAGCCGTGACCTCATCCGGC
GCTTGAAAGCCAAGGCTGGCAGCAGTCGAGCCTGGGTCCACAATAATCAG
CGAGGTGGAAGGGAGGGGGAGGCCATTGCTGCCGGCGGCGAGGCTTCAAC
AGGCGAAGATGGGACAGGACGCGCCGGTGAAAAGGGAGGGGAATACGCCC
CGGAGGCCGTTGCGGAAGGGGAGGCAGAGGGAGGGGCGGAGGGAGGGGCG
GAGGGAGGGGCGGAGGAATGGACAGCACCCAATGTGGGTGGTCTTAGCAC
CGCGAAAGTGGATGGTGTCCGCCGCTTCAACACGGAGGTGGTGCTGAACC
CTCTCTTCCAAATCTTGCGCGCGAGCCCGCAGAACCAACGCGCTCGGAAC
GACCCCGACAGGCGCAAGTCGAAGGAGGAGCGAGGGTGGGTCGGGGCAGG
GGGCGAGGGCGGGCGGCAGAAAGACGATCTACGGGTGGAGCACGTGGCGA
TCGGGGACCCGGCGGACGGGGTGACGACGGCCTTGTGGGACCTGACCCGC
TACCAGGGGGTCCTCAAGATGGTCCGCACCAACATCTACCGATGCGAGGG
CCGAGCCCTGCAGGTGGGGGGCAAGGACTTCGTGGCCGTGACCTTTCACG
GCTCCTCCTTCCTCTACAACCAGATCCGCCTCCTGGTAGGCGGGGCCATC
GCTGTGGCCTCCGGCTTGTTCCCAGAAGCGGCCTTGCCCATGGCTCTCGA
CTCTCCCTACCTCATTTACTCTCCCCTCGCTCCCGCAGAGGGTCTCTTCC
TCCGGCACATCACCTTCGGCAGGAAGAGTAAGAACCCGGTGGTGATGGAC
GAAGCCGACCTACCTACCGCCGCGGAAATGGCTGCCGCAAACTGTCCGCA
AGTGTACGCGTTGCTCTCCAAAGAGGCGGGGCAGAGGGCGGATAATTTCG
AGCGGGAGAGGATTTTGACCGAAATCACCGGAGCGTGGACGCCGGAGCTG
CTGGAGGAGTGGCGGCGGTACGCCCGTGCCTTCTTGATTGACGAGGAAGT
GGAGGCGGCCCTGTCGAAAAAGTTCCGGCAGTGGAGGGAAAGCATGGCAA
AGTTGGAGGAGGCCAAAGCCGCCCGGGAGCTCTTTCGGCGCCAGAGTATG
GCGACTTGGATGAAGAGGGAAGGAGCAGAGGGGGAGATGTCGCTGGGAGG
GGCGGGGGAAGACAAGGTCGGCGCGCTGGAGAAGGAAATTCTCAGGAGTT
ATCGGAGGTGGATGCCGCAACGGTTCGCGACGGATTTGATCATCCGTTTC
CGACTGAAGCCAGGCAAACAGGTGGGAAATGTGCTGCGGGGACTGGCGGT
GGGGATGGTGGAAGGGCGCGTGCCCACCGACGCCACGTCAGAGGAGCTGT
TTGCTTTGATGGAGGCGGAAGGCGGGGTGGGGGCGTGGGAGAAGGCGGGG
AGGCGGGTGCGTGACTCCGCGGGGTGGGAAGGGGACGAGAGCGAGGAAAG
GGAGGAGAGTGGGGGAGTAAGAGGGGAATGCACAAAGGAAGGGCGGACCC
CAATGCCCTGAACCTGGTGGGGGCTTGGCGGCTGGGAGGCTCGCCAGGGT
AAACGTCGGGGGGAGACAGTGACGTCACGTCGACAAAAGTGCAAGAACGA
ACGGGATAGCTCGGCCTCGCCGTCTGCGTTTCGTTATGGATGTTGTAGGC
GCTTTGCTTGTGCCAACCGCC

protein sequence of rna2063

>rna2063-protein ID=rna2063-protein|Name=rna2063|organism=Nannochloropsis gaditana|type=polypeptide|length=544bp
MAVLDNATDRSIEELSDLYECDRTLDAIERNGYCRVALQFPDEMLKDAPR
VCQFLMAQSKIRQKREKERQHDVSEHTEPLFFVIGDTSYGSCCVDEVAAQ
HLDADLVVHYGHACLSPTSRLPVLYVFGRKPLTQTLQSIATCLSTTLLAR
SKEKRAFLFYELAYEAIIPDVALEVNGQLVGSHVEVTTARLPLASVSPIL
PFSEEGQYLASQATGCEKEAGKVIFAGGLELRVENNGEEGEGEGGDAVVI
YIGESENNKQLVNIMLRFNACDCLVYDPASPPLPAPPRLREVSVKTSQAL
KRRYYLVQRARDASVFGVVVGTLGVGRYMSVVAAVRRLIARAGKKAYTLL
IGKLNAAKLANFAEIETFVLVACPEASLLEDGGRAFHAPVVTPLEMEMAL
GGKSWDGSYSTDFRELESLCQSGAQKERGLDTDLRKNGNCANCESDGEDE
PYFSLVSGGYKGGVGGKAKGTLPLEGSTALTKFSSPAGDFLQLREYRGLG
HDKHKNAVCETETGDRAEDREGGAKPPAGIVEGRRGIASDYDNV

mRNA from alignment at CM002458.1:798973..800927+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2063 ID=rna2063|Name=rna2063|organism=Nannochloropsis gaditana|type=mRNA|length=1955bp|location=Sequence derived from alignment at CM002458.1:798973..800927+ (Nannochloropsis gaditana)
TGATGTACGGCAGCCATTAAACCAGGCAGCGAGCGCGGAGCGAGGAGCGC
AAAGGTTACGTCGGTGCTCGCTGGGGTATAGAAGTTCATGACTTTGAACT
AGGCCAATATAATGGACTCTAATACATTTCTTCCTTGTATACAACTACAC
CAGACTCCTGTTTCTTCTTTCAAACAACCTTCCAGGTTTAACGAAAGCTA
CAAGCACCGAGTCTTTTGCCTCTCTGCTGCTTTTaagtgggaaggcggga
ggtaATGGCTGTGCTTGACAATGCTACCGATCGATCCATTGAAGAATTGT
CAGACCTGTACGAGTGCGATAGGACTTTAGACGCCATTGAACGTAATGGC
TACTGTCGCGTGGCTTTGCAGTTCCCCGATGAAATGCTAAAAGACGCGCC
GCGTGTGTGTCAATTTCTCATGGCCCAAAGTAAAATACGTCaaaagcggg
aaaaggagagacaaCACGATGTCTCCGAGCACACTGAGCCTCTATTTTTT
GTAATTGGTGACACATCATACGGTAGTTGTTGCGTGGATGAGGTTGCGGC
TCAACATTTAGATGCGGATCTAGTGGTACACTACGGCCATGCCTGCCTGT
CGCCCACCTCTCGGCTACCCGTCCTCTACGTTTTCGGCCGGAAGCCCCTC
ACGCAGACTCTCCAGTCCATAGCTACCTGTCTTTCTACAACGCTCTTGGC
GCGGAGCAAAGAAAAGCGAGCATTTTTGTTTTATGAGCTGGCATACGAGG
CCATCATTCCTGATGTGGCACTCGAGGTGAACGGACAGCTGGTAGGCTCT
CACGTAGAGGTAACCACAGCACGCCTTCCGTTGGCTTCCGTAAGCCCCAT
CTTGCCCTTCTCTGAGGAAGGACAGTACTTGGCGAGTCAAGCCACGGGgt
gcgagaaggaagcggggaaggTAATCTTTGCGGGGGGACTCGAGCTCAGG
GTCGAGAAcaatggagaagagggggagggggaaggaggggatgcgGTTGT
AATATACATAGGAGAAAGCGAGAACAACAAGCAATTGGTCAACATCATGC
TCCGATTCAATGCCTGCGACTGTCTCGTCTATGACCCAGccagtcctcct
ctcccggccccGCCACGGCTCCGCGAAGTGTCGGTCAAAACCAGCCAAGC
CCTCAAGCGCCGATACTACCTGGTACAACGCGCACGGGATGCGTCCGTCT
TCGGGGTAGTGGTTGGGACTCTGGGCGTGGGCAGGTATATGAGTgtggtg
gcggccgtgcGCCGTCTCATCGCCCGGGCGGGCAAGAAGGCCTACACCCT
GTTGATAGGGAAACTCAATGCGGCCAAACTCGCGAACTTTGCCGAGATCG
AGACCTTCGTCCTGGTGGCGTGTCCCGAGGCCTCACTCCTGGAGGACGGC
GGCAGAGCTTTCCACGCGCCTGTCGTCACGCCGCTGGAGATGGAGATGGC
TTTGGGTGGAAAGTCGTGGGATGGCTCGTATAGCACCGATTTTCGCGAGC
TCGAGTCTCTCTGCCAAAGTGGCGCCCAGAAGGAGCGCGGTCTAGATACT
GACTTAAGGAAAAATGGTAACTGTGCCAATTGTGAAAGCgatggcgagga
cgagcccTACTTCTCGCTGGTCTCCGGCGGCTACAAGGGCGGtgtaggag
ggaaggcgaaggggactCTTCCCTTGGAGGGGAGCACGGCATTGACAAAG
TTCTCAAGTCCTGCAGGAGATTTTTTACAGCTTCGAGAGTACCGCGGGTT
GGGTCATGACAAGCATAAGAATGCGGTGTGCGAAACTGAGACAGGGGACA
GGGctgaggacagggagggaggagcaaaaCCTCCAGCTGGGATTGTGGAG
GGTAGGAGAGGGATCGCCTCTGACTACGACAACGTGTGAATAGAAAGGCG
CTGCGTAAAGTCAGGTCACATCATATACATTGAAGCCAGCAAACTAAAAT
GTACC

Coding sequence (CDS) from alignment at CM002458.1:798973..800927+

>rna2063 ID=rna2063|Name=rna2063|organism=Nannochloropsis gaditana|type=CDS|length=1635bp|location=Sequence derived from alignment at CM002458.1:798973..800927+ (Nannochloropsis gaditana)
ATGGCTGTGCTTGACAATGCTACCGATCGATCCATTGAAGAATTGTCAGA
CCTGTACGAGTGCGATAGGACTTTAGACGCCATTGAACGTAATGGCTACT
GTCGCGTGGCTTTGCAGTTCCCCGATGAAATGCTAAAAGACGCGCCGCGT
GTGTGTCAATTTCTCATGGCCCAAAGTAAAATACGTCaaaagcgggaaaa
ggagagacaaCACGATGTCTCCGAGCACACTGAGCCTCTATTTTTTGTAA
TTGGTGACACATCATACGGTAGTTGTTGCGTGGATGAGGTTGCGGCTCAA
CATTTAGATGCGGATCTAGTGGTACACTACGGCCATGCCTGCCTGTCGCC
CACCTCTCGGCTACCCGTCCTCTACGTTTTCGGCCGGAAGCCCCTCACGC
AGACTCTCCAGTCCATAGCTACCTGTCTTTCTACAACGCTCTTGGCGCGG
AGCAAAGAAAAGCGAGCATTTTTGTTTTATGAGCTGGCATACGAGGCCAT
CATTCCTGATGTGGCACTCGAGGTGAACGGACAGCTGGTAGGCTCTCACG
TAGAGGTAACCACAGCACGCCTTCCGTTGGCTTCCGTAAGCCCCATCTTG
CCCTTCTCTGAGGAAGGACAGTACTTGGCGAGTCAAGCCACGGGgtgcga
gaaggaagcggggaaggTAATCTTTGCGGGGGGACTCGAGCTCAGGGTCG
AGAAcaatggagaagagggggagggggaaggaggggatgcgGTTGTAATA
TACATAGGAGAAAGCGAGAACAACAAGCAATTGGTCAACATCATGCTCCG
ATTCAATGCCTGCGACTGTCTCGTCTATGACCCAGccagtcctcctctcc
cggccccGCCACGGCTCCGCGAAGTGTCGGTCAAAACCAGCCAAGCCCTC
AAGCGCCGATACTACCTGGTACAACGCGCACGGGATGCGTCCGTCTTCGG
GGTAGTGGTTGGGACTCTGGGCGTGGGCAGGTATATGAGTgtggtggcgg
ccgtgcGCCGTCTCATCGCCCGGGCGGGCAAGAAGGCCTACACCCTGTTG
ATAGGGAAACTCAATGCGGCCAAACTCGCGAACTTTGCCGAGATCGAGAC
CTTCGTCCTGGTGGCGTGTCCCGAGGCCTCACTCCTGGAGGACGGCGGCA
GAGCTTTCCACGCGCCTGTCGTCACGCCGCTGGAGATGGAGATGGCTTTG
GGTGGAAAGTCGTGGGATGGCTCGTATAGCACCGATTTTCGCGAGCTCGA
GTCTCTCTGCCAAAGTGGCGCCCAGAAGGAGCGCGGTCTAGATACTGACT
TAAGGAAAAATGGTAACTGTGCCAATTGTGAAAGCgatggcgaggacgag
cccTACTTCTCGCTGGTCTCCGGCGGCTACAAGGGCGGtgtaggagggaa
ggcgaaggggactCTTCCCTTGGAGGGGAGCACGGCATTGACAAAGTTCT
CAAGTCCTGCAGGAGATTTTTTACAGCTTCGAGAGTACCGCGGGTTGGGT
CATGACAAGCATAAGAATGCGGTGTGCGAAACTGAGACAGGGGACAGGGc
tgaggacagggagggaggagcaaaaCCTCCAGCTGGGATTGTGGAGGGTA
GGAGAGGGATCGCCTCTGACTACGACAACGTGTGA

Synonyms

Publications