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Properties
| Property Name | Value |
|---|
| Product | pseudouridylate synthase |
| Orig transcript id | gnl|cribi|Naga_100009g102.592.mrna |
| Orig protein id | gnl|cribi|Naga_100009g102.592 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:796247..798917 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2062 ID=rna2062|Name=rna2062|organism=Nannochloropsis gaditana|type=mRNA|length=2786bp
TTTGTCGCGTCCACTGCGCCCCCTCGCACTTTCTTCGAGGACAACGTCAG
ACATGCCGCCTCAAAGATTTTGTTCTGATTCCGCGTAATCGAGCTTGAGG
ACTGCACACCATCCCTTCCCACGGGCCAAAGCAATTTGCGCTTTTATGAT
GCATGCATCTTCTGTGTCAATGATATGTCTTGCACAACAATGTCATGGCA
CAGGCAACGTCGACCACTTCATATAAGCTGCCGGGGCTACCAACATCCAA
GTCCATCTTAAACAGCAAGAAGAGATACGACGTCGGCCATCAGGAAACTG
GGTCGCTGCTCGAGCCAAGACCAAGTAGGGGGAAGAGGCGGGCTGTCATC
GGCACGACGGCGTCTTCGTTTGCAGCATGGAAGCAGATTTTGGTCGTTCG
TCTCTAGTCAACTCTTCCAATATGCCGGGCAATGTAATGTCGCAGCCCTC
AAATGGCGGATGGCCGACCTCGAATCATGCGTACGCGTCTACCTCCATCC
CTCAGGGTCCTCCCACCCATGCCCACACTGCGCCCCCTCTTCAGCCAACA
TCAGCCTATTCGCGCTGGCTCTATGAAGGCGGAGCGGGGACAGGCGCTGC
GCCCAGCCTTCCATATCCACAGCAAAATCAACCACCATCGCAGCCACCGC
CACCGCCGCAGCAGACTGGCGAAAGTTGGATCCCGGGGGCCGGGGGAGGA
GAGCTGGTCAATGGGGGGAGGAGAATAGGAGAGGCACGCGGGGGAGGAGA
AGGAGGGGAAGGAGGAGCAGGAGGAACCGCGCGGCCGCAGACGTTGGGGT
ATTGGGGGGCTAGCATGCCCAGCGCGGGCTACAGTGGTAGTGGGGGAGGG
GCGGCGAGCAAAGGGAGCGAGAGCGACTCCTCGGACGAGGGCAGCACAGC
CCGTCCTGGCGGGGCCAAGGGGCGGAAGCTGCCGTCGAACGGCCGGGACT
CCTCGGAGCTGGAGAAGCGCCTGAAGAAGAATGCCCGGGAGCAAAAGCGC
GCGAACAAGATCAACGACCAGATCGCCATCATGAAGACGATCCTGGAGTC
TGTGGGGCTTCGTCCGCCTCCCACCAAGTCCTCCATCCTCGCCGAGGGCA
TTCAGCTCATCCGCAGCCTGCTCGCGCAGGTCGGCCCCGAGGGCAAGGCG
CCAGGCACCGAGCCCAGCCAGGCGGAGCCCTACTGGCTTCTGTTCCGGAA
GTCCGCCACGCCCCTGGCCATGTGCCGGCCGGACGGGCACGGGCGCTTTC
TGGACTGCAACACCCGCTTCTGCGAGGTCTTTGGGTGCACGCCCGAGGAG
CTGCAGAAGGAGACGCCCCTCTCCTTCACCCGCGAGTACGACGCGGAGAA
CACCCAGCGGGTCCTGGCCCTGGTGAGTCAGCCTGGGCTCTTGGACGAGA
GCTCTCCCCTGGAGGTGGTGCTCACCAACAAGCACCAGCAGCGCTTCCTC
GTTCGCGTCTCCTCCCTCCTGGACGACTATCAGAAGCCGCGCTTCCTCCT
CTTCACACCCAAGGCCATGCTCCGGGGCGTGAACGGACAGGAACCCTCCT
CCGCCCCGCCCTCCTCCTTCGCCTCTGCCCCGCCCCTCCCTTCGCAGCCC
GCCCCCCACCCCGCGGTTTTGGCCGGCCCCGTAGCCCCGCCCCTCGTTCC
CTCCCAGTCCTCCATGCCTTCCTCCGCCGCCTCCTCCTCCTCCTCGCTGG
GCGCCATGCTGCCCATTCCCATCAGTCAAGCTCCCGACCCACACTTGCCG
CAGATCTCCCTCCTCTCCCCGCAGGCACCGCCCACTCGCGAGCCTCGAGC
CCCCCACATCCACAATCAGCCCCATCACCAGCACTACCAGCAACATCTAC
ACCACATCCTCCAGCAGCACAACCCAGGATCGCCGCAAGACGCGCCGCCA
CCGCAGCAGCGGCAGCACCAAGCCTTTCCTGCCGCCGTGCAGGAGGCATC
CTCCCCCTCTCCCCAGGCGGGACGCGTGGCCGAGAACGATCAGAAGCCTT
CCCCTCCCCCTCTTCCCTTCAACCTTCGTTTCCCTCCTCTTTCTACAACG
GAGGCCGCGTCGGTGGTGGACCGAGCAACAGCCATTCCTCGCCCCGCTCC
TCGCCCAACAACTCGTCAAGGGAGCCAGTCTCGGGCATTGTCTCCCCTTT
GACCACAGCTCCTCCGCCAACACTAAAGCCGAGCGGCAAGAGTCAAGAAG
CGGCTGTCTAATCGCGCGCGGAATTTGAACGAAGCCTGTGCACGGGAAGA
CGGACCCAAAGGCCAAAATTGAAACAGGCACAGCTGAAAACGGAATGTTT
ATGAATAGGAACTCGCCTCAGGGAACCGGCTTATCGGGAATATGACGTGT
CCGGGAATGGAGGCATTGTATCAAAAGATCTTGACGACACAAATACGGAC
TCGAAATGAGTTGACATGGCGAACGAAAGGAAATGGTAGATCCGGGAAGG
GGAAGGAGATCTATCGTTCACAGAAGCTAGCGCGTGGCGTGCTCCTGGTT
GTGTACGCGAATGATATGTGTGGACCGGAATTAGTGCCCTTGTATGTGCG
TGTGTGGCGGTTGGCACAAGCAAAGCGCCTACAACATCCATAACGAAACG
CAGACGGCGAGGCCGAGCTATCCCGTTCGTTCTTGCACTTTTGTCGACGT
GACGTCACTGTCTCCCCCCGACGTTTACCCTGGCGAGCCTCCCAGCCGCC
AAGCCCCCACCAGGTTCAGGGCATTGGGGTCCGCCCTTCCTTTGTGCATT
CCCCTCTTACTCCCCCACTCTCCTCCCTTTCCTCGC back to topprotein sequence of rna2062 >rna2062-protein ID=rna2062-protein|Name=rna2062|organism=Nannochloropsis gaditana|type=polypeptide|length=812bp
MRRARPRPPHSRSPALSLLPLLLLSRNFTALITASRIRISGGPLRQRLAA
WGSPLSPSPPPIRYSRSLGALSRPSCLLFPHRTPLVAVAMRKGADDREDC
HGLPQTVDVGSKPLRDRKKRRMALVIGYVGTKYSGLQKSEPGPGEAEVIT
IESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLE
LWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFR
EYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFT
KIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGEDGTGR
AGEKGGEYAPEAVAEGEAEGGAEGGAEGGAEEWTAPNVGGLSTAKVDGVR
RFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEERGWVGAGGEGGRQK
DDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRALQVGG
KDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYS
PLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVYALLSK
EAGQRADNFERERILTEITGAWTPELLEEWRRYARAFLIDEEVEAALSKK
FRQWRESMAKLEEAKAARELFRRQSMATWMKREGAEGEMSLGGAGEDKVG
ALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRV
PTDATSEELFALMEAEGGVGAWEKAGRRVRDSAGWEGDESEEREESGGVR
GECTKEGRTPMP back to topmRNA from alignment at CM002458.1:796247..798917- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna2062 ID=rna2062|Name=rna2062|organism=Nannochloropsis gaditana|type=mRNA|length=2671bp|location=Sequence derived from alignment at CM002458.1:796247..798917- (Nannochloropsis gaditana)
AAAACAGGGTCTTGAAAGTCGTGCTACAGATTTACTTTGCTGCATTGCTG
GCTCCGCGTATGAGCCTGTGACATGCGGCGTGCTCGGCCCCGACCGCCCC
ACTCTCGTAGCCCCGCCTTGTCCCTCCTGCCGCTGCTGCTGCTTTCCCGT
AATTTCACAGCATTGATCACGGCTAGTAGAATAAGAATTAGCGGTGGTCC
ATTACGGCAGCGGCTAGCTGCTTGGGGGTCGCCTTTAAGTCCATCTCCTC
CACCAATCCGGTACTCCCGCTCTCTGGGCGCCCTCTCTCGCCCCTCGTGC
CTGCTATTCCCACATCGCACTCCATTGGTGGCGGTGGCCATGCGAAAGGG
CGCAGATGACAGGGAAGACTGTCATGGCTTGCCTCAGACCGTAGACGTTG
GCAGCAAGCCGCTAAGAGACCGTAAAAAGAGGCGCATGGCCTTGGTAATC
GGGTATGTAGGTACAAAGTATTCTGGCTTGCAAAAATCCGAACCAGGCCC
GGGCGAGGCAGAAGTCATTACGATCGAGTCAGTATTGGAAAAAGCGCTGT
TTGATGCGGGCTACATACGGGAAAGCAATTTCGGGGATCTGGATAAGATT
GGCTGGGCGCGTTGCTCTCGGACGGACAAGGGCGTGCATGCGGCGCGGAA
TGTGGTCTCGGCCAAGCTGGAGCTATGGGTAGATGACATGGAAGGCGATA
GCCCTAACTGGAGCGAGCGAGCCGTCAAAGAGATAAATGCCTGCCTGCCT
GATGACATCCGCGTGCACAGTTGTGCCAAAGCAACCAAGTCGTTCAGACC
GCGAGACGCCGTGAGCTTTCGAGAATACGTGTACATCGTCCCTCTCGAGC
TCCTCCGTCCGTTCCCAGGCACCGGTCGAGCCGTCGCAGACGAAAGCTCA
GAGGCTTTAATCGCCCGTTTCTGCGACTTGCTCGTGCGGTTCCAGGGCAC
GCATAATTTCCACAATTTCACCAAAATAAAGAGCCGTGACCTCATCCGGC
GCTTGAAAGCCAAGGCTGGCAGCAGTCGAGCCTGGGTCCACAATAATCAG
CGAGGTGGAAGGGAGGGGGAGGCCATTGCTGCCGGCGGCGAGGCTTCAAC
AGGCGAAGATGGGACAGGACGCGCCGGTGAAAAGGGAGGGGAATACGCCC
CGGAGGCCGTTGCGGAAGGGGAGGCAGAGGGAGGGGCGGAGGGAGGGGCG
GAGGGAGGGGCGGAGGAATGGACAGCACCCAATGTGGGTGGTCTTAGCAC
CGCGAAAGTGGATGGTGTCCGCCGCTTCAACACGGAGGTGGTGCTGAACC
CTCTCTTCCAAATCTTGCGCGCGAGCCCGCAGAACCAACGCGCTCGGAAC
GACCCCGACAGGCGCAAGTCGAAGGAGGAGCGAGGGTGGGTCGGGGCAGG
GGGCGAGGGCGGGCGGCAGAAAGACGATCTACGGGTGGAGCACGTGGCGA
TCGGGGACCCGGCGGACGGGGTGACGACGGCCTTGTGGGACCTGACCCGC
TACCAGGGGGTCCTCAAGATGGTCCGCACCAACATCTACCGATGCGAGGG
CCGAGCCCTGCAGGTGGGGGGCAAGGACTTCGTGGCCGTGACCTTTCACG
GCTCCTCCTTCCTCTACAACCAGATCCGCCTCCTGGTAGGCGGGGCCATC
GCTGTGGCCTCCGGCTTGTTCCCAGAAGCGGCCTTGCCCATGGCTCTCGA
CTCTCCCTACCTCATTTACTCTCCCCTCGCTCCCGCAGAGGGTCTCTTCC
TCCGGCACATCACCTTCGGCAGGAAGAGTAAGAACCCGGTGGTGATGGAC
GAAGCCGACCTACCTACCGCCGCGGAAATGGCTGCCGCAAACTGTCCGCA
AGTGTACGCGTTGCTCTCCAAAGAGGCGGGGCAGAGGGCGGATAATTTCG
AGCGGGAGAGGATTTTGACCGAAATCACCGGAGCGTGGACGCCGGAGCTG
CTGGAGGAGTGGCGGCGGTACGCCCGTGCCTTCTTGATTGACGAGGAAGT
GGAGGCGGCCCTGTCGAAAAAGTTCCGGCAGTGGAGGGAAAGCATGGCAA
AGTTGGAGGAGGCCAAAGCCGCCCGGGAGCTCTTTCGGCGCCAGAGTATG
GCGACTTGGATGAAGAGGGAAGGAGCAGAGGGGGAGATGTCGCTGGGAGG
GGCGGGGGAAGACAAGGTCGGCGCGCTGGAGAAGGAAATTCTCAGGAGTT
ATCGGAGGTGGATGCCGCAACGGTTCGCGACGGATTTGATCATCCGTTTC
CGACTGAAGCCAGGCAAACAGGTGGGAAATGTGCTGCGGGGACTGGCGGT
GGGGATGGTGGAAGGGCGCGTGCCCACCGACGCCACGTCAGAGGAGCTGT
TTGCTTTGATGGAGGCGGAAGGCGGGGTGGGGGCGTGGGAGAAGGCGGGG
AGGCGGGTGCGTGACTCCGCGGGGTGGGAAGGGGACGAGAGCGAGGAAAG
GGAGGAGAGTGGGGGAGTAAGAGGGGAATGCACAAAGGAAGGGCGGACCC
CAATGCCCTGAACCTGGTGGGGGCTTGGCGGCTGGGAGGCTCGCCAGGGT
AAACGTCGGGGGGAGACAGTGACGTCACGTCGACAAAAGTGCAAGAACGA
ACGGGATAGCTCGGCCTCGCCGTCTGCGTTTCGTTATGGATGTTGTAGGC
GCTTTGCTTGTGCCAACCGCC back to topCoding sequence (CDS) from alignment at CM002458.1:796247..798917- >rna2062 ID=rna2062|Name=rna2062|organism=Nannochloropsis gaditana|type=CDS|length=2439bp|location=Sequence derived from alignment at CM002458.1:796247..798917- (Nannochloropsis gaditana)
ATGCGGCGTGCTCGGCCCCGACCGCCCCACTCTCGTAGCCCCGCCTTGTC
CCTCCTGCCGCTGCTGCTGCTTTCCCGTAATTTCACAGCATTGATCACGG
CTAGTAGAATAAGAATTAGCGGTGGTCCATTACGGCAGCGGCTAGCTGCT
TGGGGGTCGCCTTTAAGTCCATCTCCTCCACCAATCCGGTACTCCCGCTC
TCTGGGCGCCCTCTCTCGCCCCTCGTGCCTGCTATTCCCACATCGCACTC
CATTGGTGGCGGTGGCCATGCGAAAGGGCGCAGATGACAGGGAAGACTGT
CATGGCTTGCCTCAGACCGTAGACGTTGGCAGCAAGCCGCTAAGAGACCG
TAAAAAGAGGCGCATGGCCTTGGTAATCGGGTATGTAGGTACAAAGTATT
CTGGCTTGCAAAAATCCGAACCAGGCCCGGGCGAGGCAGAAGTCATTACG
ATCGAGTCAGTATTGGAAAAAGCGCTGTTTGATGCGGGCTACATACGGGA
AAGCAATTTCGGGGATCTGGATAAGATTGGCTGGGCGCGTTGCTCTCGGA
CGGACAAGGGCGTGCATGCGGCGCGGAATGTGGTCTCGGCCAAGCTGGAG
CTATGGGTAGATGACATGGAAGGCGATAGCCCTAACTGGAGCGAGCGAGC
CGTCAAAGAGATAAATGCCTGCCTGCCTGATGACATCCGCGTGCACAGTT
GTGCCAAAGCAACCAAGTCGTTCAGACCGCGAGACGCCGTGAGCTTTCGA
GAATACGTGTACATCGTCCCTCTCGAGCTCCTCCGTCCGTTCCCAGGCAC
CGGTCGAGCCGTCGCAGACGAAAGCTCAGAGGCTTTAATCGCCCGTTTCT
GCGACTTGCTCGTGCGGTTCCAGGGCACGCATAATTTCCACAATTTCACC
AAAATAAAGAGCCGTGACCTCATCCGGCGCTTGAAAGCCAAGGCTGGCAG
CAGTCGAGCCTGGGTCCACAATAATCAGCGAGGTGGAAGGGAGGGGGAGG
CCATTGCTGCCGGCGGCGAGGCTTCAACAGGCGAAGATGGGACAGGACGC
GCCGGTGAAAAGGGAGGGGAATACGCCCCGGAGGCCGTTGCGGAAGGGGA
GGCAGAGGGAGGGGCGGAGGGAGGGGCGGAGGGAGGGGCGGAGGAATGGA
CAGCACCCAATGTGGGTGGTCTTAGCACCGCGAAAGTGGATGGTGTCCGC
CGCTTCAACACGGAGGTGGTGCTGAACCCTCTCTTCCAAATCTTGCGCGC
GAGCCCGCAGAACCAACGCGCTCGGAACGACCCCGACAGGCGCAAGTCGA
AGGAGGAGCGAGGGTGGGTCGGGGCAGGGGGCGAGGGCGGGCGGCAGAAA
GACGATCTACGGGTGGAGCACGTGGCGATCGGGGACCCGGCGGACGGGGT
GACGACGGCCTTGTGGGACCTGACCCGCTACCAGGGGGTCCTCAAGATGG
TCCGCACCAACATCTACCGATGCGAGGGCCGAGCCCTGCAGGTGGGGGGC
AAGGACTTCGTGGCCGTGACCTTTCACGGCTCCTCCTTCCTCTACAACCA
GATCCGCCTCCTGGTAGGCGGGGCCATCGCTGTGGCCTCCGGCTTGTTCC
CAGAAGCGGCCTTGCCCATGGCTCTCGACTCTCCCTACCTCATTTACTCT
CCCCTCGCTCCCGCAGAGGGTCTCTTCCTCCGGCACATCACCTTCGGCAG
GAAGAGTAAGAACCCGGTGGTGATGGACGAAGCCGACCTACCTACCGCCG
CGGAAATGGCTGCCGCAAACTGTCCGCAAGTGTACGCGTTGCTCTCCAAA
GAGGCGGGGCAGAGGGCGGATAATTTCGAGCGGGAGAGGATTTTGACCGA
AATCACCGGAGCGTGGACGCCGGAGCTGCTGGAGGAGTGGCGGCGGTACG
CCCGTGCCTTCTTGATTGACGAGGAAGTGGAGGCGGCCCTGTCGAAAAAG
TTCCGGCAGTGGAGGGAAAGCATGGCAAAGTTGGAGGAGGCCAAAGCCGC
CCGGGAGCTCTTTCGGCGCCAGAGTATGGCGACTTGGATGAAGAGGGAAG
GAGCAGAGGGGGAGATGTCGCTGGGAGGGGCGGGGGAAGACAAGGTCGGC
GCGCTGGAGAAGGAAATTCTCAGGAGTTATCGGAGGTGGATGCCGCAACG
GTTCGCGACGGATTTGATCATCCGTTTCCGACTGAAGCCAGGCAAACAGG
TGGGAAATGTGCTGCGGGGACTGGCGGTGGGGATGGTGGAAGGGCGCGTG
CCCACCGACGCCACGTCAGAGGAGCTGTTTGCTTTGATGGAGGCGGAAGG
CGGGGTGGGGGCGTGGGAGAAGGCGGGGAGGCGGGTGCGTGACTCCGCGG
GGTGGGAAGGGGACGAGAGCGAGGAAAGGGAGGAGAGTGGGGGAGTAAGA
GGGGAATGCACAAAGGAAGGGCGGACCCCAATGCCCTGA back to top
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