EWM28549.1, cds2054 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|585110967|gb|EWM28549.1| (pseudouridylate synthase [Nannochloropsis gaditana]) HSP 1 Score: 1644.02 bits (4256), Expect = 0.000e+0 Identity = 812/812 (100.00%), Postives = 812/812 (100.00%), Query Frame = 0
Query: 1 MRRARPRPPHSRSPALSLLPLLLLSRNFTALITASRIRISGGPLRQRLAAWGSPLSPSPPPIRYSRSLGALSRPSCLLFPHRTPLVAVAMRKGADDREDCHGLPQTVDVGSKPLRDRKKRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGEDGTGRAGEKGGEYAPEAVAEGEAEGGAEGGAEGGAEEWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEERGWVGAGGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRALQVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVYALLSKEAGQRADNFERERILTEITGAWTPELLEEWRRYARAFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGAEGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEGGVGAWEKAGRRVRDSAGWEGDESEEREESGGVRGECTKEGRTPMP 812
MRRARPRPPHSRSPALSLLPLLLLSRNFTALITASRIRISGGPLRQRLAAWGSPLSPSPPPIRYSRSLGALSRPSCLLFPHRTPLVAVAMRKGADDREDCHGLPQTVDVGSKPLRDRKKRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGEDGTGRAGEKGGEYAPEAVAEGEAEGGAEGGAEGGAEEWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEERGWVGAGGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRALQVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVYALLSKEAGQRADNFERERILTEITGAWTPELLEEWRRYARAFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGAEGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEGGVGAWEKAGRRVRDSAGWEGDESEEREESGGVRGECTKEGRTPMP
Sbjct: 1 MRRARPRPPHSRSPALSLLPLLLLSRNFTALITASRIRISGGPLRQRLAAWGSPLSPSPPPIRYSRSLGALSRPSCLLFPHRTPLVAVAMRKGADDREDCHGLPQTVDVGSKPLRDRKKRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGEDGTGRAGEKGGEYAPEAVAEGEAEGGAEGGAEGGAEEWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEERGWVGAGGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRALQVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVYALLSKEAGQRADNFERERILTEITGAWTPELLEEWRRYARAFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGAEGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEGGVGAWEKAGRRVRDSAGWEGDESEEREESGGVRGECTKEGRTPMP 812
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|568827616|ref|XP_006468147.1| (PREDICTED: putative tRNA pseudouridine synthase isoform X3 [Citrus sinensis]) HSP 1 Score: 172.17 bits (435), Expect = 4.305e-42 Identity = 146/474 (30.80%), Postives = 210/474 (44.30%), Query Frame = 0
Query: 104 PQTVDVGSKPLRDRKKRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLEL----WVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTG-EDGTGRAGEKGGEYAPEAVAEGEAEGGAEGGAEGGAEEWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEERG-WVGAGGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCE-GRALQVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSK 570
P + D +P+R K+++AL +GYVGT Y GLQ E + TIE LE A+F AG IRESN+G+L KI WAR SRTDKGVH+ ++ K+E+ W DD G K +NA LP +I+V S + +SF PR + R+Y Y++P E++ G + ++ I+ F +L F+G H FHN+T+ R RR K G ++R +A+ + E S G EDG + E GE E GG +E N + V GV + + NQ A D+ S R W+ E D L H I+ C G+ + G +V ++ G SF+ +QIR +VG A+AV L P L ++L I PLAP+E LFLR +F +++
Sbjct: 65 PNSSDDKWEPVR---KKKVALRVGYVGTDYRGLQMQR---DEHSLSTIEGELETAVFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID------LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI----GINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE---RSKYRRKPHKTGCV------SKRAKASKDAVFSRVEESEGEEDGFSKVEESDGE-----------EDLGIGGEISSDDEKANQN------SMVSGVHQEDC---------------CNQHANGLKDQNSSSVIRARWLYETDEA----DKLSASHF---------------------------RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTR 450
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|571441411|ref|XP_006575435.1| (PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Glycine max] >gi|571441413|ref|XP_006575436.1| PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Glycine max] >gi|571441417|ref|XP_006575438.1| PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Glycine max] >gi|947124573|gb|KRH72779.1| hypothetical protein GLYMA_02G233600 [Glycine max] >gi|947124574|gb|KRH72780.1| hypothetical protein GLYMA_02G233600 [Glycine max] >gi|947124575|gb|KRH72781.1| hypothetical protein GLYMA_02G233600 [Glycine max] >gi|947124576|gb|KRH72782.1| hypothetical protein GLYMA_02G233600 [Glycine max]) HSP 1 Score: 166.007 bits (419), Expect = 2.169e-40 Identity = 134/448 (29.91%), Postives = 200/448 (44.64%), Query Frame = 0
Query: 118 KKRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFT---KIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGEDGTGRAGEKGGEYAPEAVAEGEAEGGAEGGAEGGAEEWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEERGWVGAGGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRALQVG-GKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLR 561
+K+++A+++ YVGT Y GLQ E + TIE LE A+F AG IRESNFGDL KIGWAR SRTDKGVH+ ++S K+E+ + GD + +N+ LP DI+V S + +SF PR R+Y Y++P E++ G +DE + I+ F D+L F+G H FHN+T K + + R+ +K+G+S RE + + E S GE+ + E Y V + + AE P VG +S +N +D D R R W+ E R L H ++ V + C L+ G +++ ++ G SF+ +QIR +VG A+AV P+ + ++L I PLAP+E L LR
Sbjct: 43 RKKKVAMLVAYVGTNYRGLQMQH---DEHSLSTIEKELETAIFKAGGIRESNFGDLQKIGWARSSRTDKGVHSLATIISFKMEIPENAWNGDPYGFG--LANYVNSYLPFDIKVISILPSQRSFDPRKECILRKYSYLLPAEII----GIQSHFSDE-VDYHISEFNDILNVFEGIHPFHNYTARSKYRKQFPNRQSSSKSGTS----------ARESLSYESECEYSDGEENS----ETDEAYTENIVCQSQKFSETHHFAE--------PVVG---------------------------SSNKNGNGLHDQDSRLVARAR-WLYEPDEADR----LSASH-------------------FRKVFQ--------CSCGKLETSLGYNYIEISIQGESFMLHQIRKMVGTAVAVKRKALPKDIIKLSLTRFSRIILPLAPSEALILR 399
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|565362585|ref|XP_006348027.1| (PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Solanum tuberosum]) HSP 1 Score: 160.614 bits (405), Expect = 1.707e-38 Identity = 139/469 (29.64%), Postives = 200/469 (42.64%), Query Frame = 0
Query: 104 PQTVDVGSKPLRDRKKRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNN---QRGGREGEAIAAGGEASTGEDGTGRAGEKGGEYAPEAVAEGEAEGGAEGGAEGGAEEWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEERGWVGAGGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRALQVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKS 569
P+ + V S K+++ + +GYVG+ Y GLQ E ++ TIE LEKA+F AG IR+SNFG+L KIGWAR SRTDKGVH+ ++S K+E+ D E D PN A +N+ LP++IRV S + K F R + R+Y Y++P E++ G E IA F D+L F+G H FHN+T IR K +R + N ++G E +G E S GE + G E + E E + EG E KV + N+ + P R ++PD R + R+ H G + + +L M + C G SF+ +QIR +VG A+A+ L P L M+L I PLAP+E L L+ F ++
Sbjct: 34 PEDLSVQSNKWDPFIKKKVVMRVGYVGSDYRGLQMQR---DEHQLSTIEGELEKAIFKAGGIRDSNFGNLYKIGWARSSRTDKGVHSLATMISLKMEIPADAWE-DDPNGIALA-NCVNSSLPENIRVFSILPSKKRFDARRECNARKYSYLIPAEII----GIKNDSTSSEIEYHIANFNDILNSFEGEHPFHNYT-------IRSKYRKQSPARNLLKNESLLKKGRPSSEKEISGSEESDGE-------QNGKEKGVVTIVEAENQ-----NPEGNCNE------------KVSHSKDLNSVI------------PIQARWLHEPDARDKLSSAHF-------------RRIFHCHCG--------------KLEKLLGMNYVEVSIC------------------GESFMLHQIRKMVGTAVAIKRNLLPHDILRMSLCKFSRIVLPLAPSEVLVLKGNNFALRN 405
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|697166434|ref|XP_009592048.1| (PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosiformis]) HSP 1 Score: 160.614 bits (405), Expect = 2.440e-38 Identity = 147/513 (28.65%), Postives = 217/513 (42.30%), Query Frame = 0
Query: 119 KRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLEL----WVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGEDGTGRAGEKGGEYAPEAVAEGEAEGGAEGGAEGGAEEWTAPNVGGLSTAKVDGVR--RFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEERGWVGAGGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRALQVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVYALLSKEAGQRA-DNFERERILTEITGAWTP 624
K+++ + +GYVG+ Y GLQ E E+ TIE LEKA+F AG IR+SNFG+L KIGWAR SRTDKGVH+ ++S K+E+ W DD G S +N+ LP++IRV S + K F R + R+Y Y++P E++ G + ++ F D+L F+G H FHN+T IR S+ H+ R + + + G ST E+ +G E GE E E G E+ V LST G + + L P+ IL AR D+ S R R+ H G + + + M ++V V+ G SF+ +QIR +VG A+A+ L P L M+L I PLAP+E L L+ F +++ + P++ LL E +A D F +LT+++ P
Sbjct: 67 KKKVVMRVGYVGSDYRGLQMQR---DEHELSTIEGELEKAIFKAGGIRDSNFGNLYKIGWARSSRTDKGVHSLSTMISLKMEIPEDAWQDDPNGIS------LANCVNSYLPENIRVFSILPSKKRFDARRECNARKYSYLLPAEII----GIKNGSTSSEIDYHLSNFNDILNSFEGEHPFHNYT-------IR--------SKYRKHSPARKLLQYDCLLKKGRPSTEEEISG-CEESDGE-----------ENCKENGVVTTVEDENQNPVCNLSTGNQAGNYNGKLSHSKELYPVLPILARWLHETDAR---DKLSSAHFR----------------RIFHCHCG--------------KLEKLFSM------------------NYVEVSICGESFMLHQIRKMVGTAVAIKRNLLPPDVLRMSLCKFSRIVLPLAPSEVLVLKGNNFALRNQPGNITR---------------PEMLTLLESEDIIKAVDEFYYSTVLTQLSKFLDP 473
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|567949407|gb|ETK75139.1| (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica] >gi|567978072|gb|ETL28566.1| tRNA pseudouridine(38-40) synthase [Phytophthora parasitica] >gi|570939440|gb|ETP04697.1| tRNA pseudouridine(38-40) synthase [Phytophthora parasitica CJ01A1]) HSP 1 Score: 155.606 bits (392), Expect = 2.505e-36 Identity = 95/217 (43.78%), Postives = 127/217 (58.53%), Query Frame = 0
Query: 119 KRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKE-INACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEA 334
KR++A+V GY+GT Y GLQ ++ V TIE + +A+FDAG +RESNF DL KI WAR SRTDKGVHA V S KL L ++ + D + +KE +NA LPD+IRV SC + +K F R REY Y +PL L+ G D ++ +A FC L R++G H+FHNFT +SR +++AK RA N QR E E+
Sbjct: 53 KRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKL-LIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES 256 HSP 2 Score: 98.2117 bits (243), Expect = 1.249e-17 Identity = 86/304 (28.29%), Postives = 138/304 (45.39%), Query Frame = 0
Query: 485 RTNIYRCEGRAL-QVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVY-ALLSKEAGQRADNFERERILTEITGAW-TPELLEEWRRYA-RAFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGA--EGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEGGVGAWEKAGRRVRDS 782
R +IY C G + G+ + V G +FL NQIR +VGGA+AVA+ AL + ++ P+APAEGL L +FG KS + ++ + E+A V+ LL+++ + F E I EI+ +W E ++ WR Y R + +E + E A L E A+ +AT K + + L G VGAL +P++FAT L +R+ + PG ++ R + + G++P DA E++ ++ G K GR++R S
Sbjct: 300 RRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPN----TELAKERKDVVHRVLLNRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCYEANERLNQD---------ELSAVLYEMDQAK-------LATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILEYIDNYGPAN-LAKEGRKLRLS 571
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|675209155|ref|XP_008913462.1| (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica INRA-310] >gi|568086243|gb|ETN01135.1| tRNA pseudouridine(38-40) synthase [Phytophthora parasitica INRA-310]) HSP 1 Score: 155.606 bits (392), Expect = 2.649e-36 Identity = 95/217 (43.78%), Postives = 127/217 (58.53%), Query Frame = 0
Query: 119 KRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKE-INACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEA 334
KR++A+V GY+GT Y GLQ ++ V TIE + +A+FDAG +RESNF DL KI WAR SRTDKGVHA V S KL L ++ + D + +KE +NA LPD+IRV SC + +K F R REY Y +PL L+ G D ++ +A FC L R++G H+FHNFT +SR +++AK RA N QR E E+
Sbjct: 53 KRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKL-LIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES 256 HSP 2 Score: 98.2117 bits (243), Expect = 1.305e-17 Identity = 85/302 (28.15%), Postives = 137/302 (45.36%), Query Frame = 0
Query: 485 RTNIYRCEGRAL-QVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVY-ALLSKEAGQRADNFERERILTEITGAW-TPELLEEWRRYA-RAFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGA--EGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEGGVGAWEKAGRRVR 780
R +IY C G + G+ + V G +FL NQIR +VGGA+AVA+ AL + ++ P+APAEGL L +FG KS + ++ + E+A V+ LL+++ + F E I EI+ +W E ++ WR Y R + +E + E A L E A+ +AT K + + L G VGAL +P++FAT L +R+ + PG ++ R + + G++P DA E++ ++ G K GR++R
Sbjct: 300 RRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPN----TELAKERKDVVHRVLLNRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCYEANERLNQD---------ELSAVLYEMDQAK-------LATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILEYIDNYGPAN-LAKEGRKLR 569
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|566011943|gb|ETI34854.1| (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica P1569] >gi|568037438|gb|ETM35023.1| tRNA pseudouridine(38-40) synthase [Phytophthora parasitica] >gi|570315663|gb|ETO63611.1| tRNA pseudouridine(38-40) synthase [Phytophthora parasitica P1976]) HSP 1 Score: 155.606 bits (392), Expect = 2.724e-36 Identity = 95/217 (43.78%), Postives = 127/217 (58.53%), Query Frame = 0
Query: 119 KRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKE-INACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEA 334
KR++A+V GY+GT Y GLQ ++ V TIE + +A+FDAG +RESNF DL KI WAR SRTDKGVHA V S KL L ++ + D + +KE +NA LPD+IRV SC + +K F R REY Y +PL L+ G D ++ +A FC L R++G H+FHNFT +SR +++AK RA N QR E E+
Sbjct: 53 KRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKL-LIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES 256 HSP 2 Score: 99.3673 bits (246), Expect = 5.362e-18 Identity = 87/304 (28.62%), Postives = 138/304 (45.39%), Query Frame = 0
Query: 485 RTNIYRCEGRAL-QVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVY-ALLSKEAGQRADNFERERILTEITGAW-TPELLEEWRRYA-RAFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGA--EGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEGGVGAWEKAGRRVRDS 782
R +IY C G + G+ + V G +FL NQIR +VGGA+AVA+ AL + ++ P+APAEGL L +FG KS + ++ + E+A V+ LLS++ + F E I EI+ +W E ++ WR Y R + +E + E A L E A+ +AT K + + L G VGAL +P++FAT L +R+ + PG ++ R + + G++P DA E++ ++ G K GR++R S
Sbjct: 300 RRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPN----TELAKERKDVVHRVLLSRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCYEANERLNQD---------ELSAVLYEMDQAK-------LATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILGYIDNYGPAN-LAKEGRKLRLS 571
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|568007587|gb|ETL81824.1| (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica]) HSP 1 Score: 155.606 bits (392), Expect = 2.854e-36 Identity = 95/217 (43.78%), Postives = 127/217 (58.53%), Query Frame = 0
Query: 119 KRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKE-INACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEA 334
KR++A+V GY+GT Y GLQ ++ V TIE + +A+FDAG +RESNF DL KI WAR SRTDKGVHA V S KL L ++ + D + +KE +NA LPD+IRV SC + +K F R REY Y +PL L+ G D ++ +A FC L R++G H+FHNFT +SR +++AK RA N QR E E+
Sbjct: 53 KRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKL-LIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES 256 HSP 2 Score: 96.6709 bits (239), Expect = 4.021e-17 Identity = 85/304 (27.96%), Postives = 138/304 (45.39%), Query Frame = 0
Query: 485 RTNIYRCEGRAL-QVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVY-ALLSKEAGQRADNFERERILTEITGAW-TPELLEEWRRYA-RAFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGA--EGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEGGVGAWEKAGRRVRDS 782
R +IY C G + G+ + V G +FL NQIR +VGGA+AVA+ AL + ++ P+APAEGL L +FG KS + ++ + E+A V+ LL+++ + F + I EI+ +W E ++ WR Y R + +E + E A L E A+ +AT K + + L G VGAL +P++FAT L +R+ + PG ++ R + + G++P DA E++ ++ G K GR++R S
Sbjct: 300 RRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPN----TELAKERKDVVHRVLLNRKEDEEMRQFREKVIYKEISRSWDMEEKMDRWRAYLERCYEANERLNQD---------ELSAVLYEMDQAK-------LATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILEYIDNYGPAN-LAKEGRKLRLS 571
BLAST of EWM28549.1 vs. NCBI_GenBank
Match: gi|570969729|gb|ETP32848.1| (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica P10297]) HSP 1 Score: 155.606 bits (392), Expect = 2.962e-36 Identity = 95/217 (43.78%), Postives = 127/217 (58.53%), Query Frame = 0
Query: 119 KRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKE-INACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEA 334
KR++A+V GY+GT Y GLQ ++ V TIE + +A+FDAG +RESNF DL KI WAR SRTDKGVHA V S KL L ++ + D + +KE +NA LPD+IRV SC + +K F R REY Y +PL L+ G D ++ +A FC L R++G H+FHNFT +SR +++AK RA N QR E E+
Sbjct: 53 KRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKL-LIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES 256 HSP 2 Score: 98.2117 bits (243), Expect = 1.363e-17 Identity = 86/304 (28.29%), Postives = 138/304 (45.39%), Query Frame = 0
Query: 485 RTNIYRCEGRAL-QVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVY-ALLSKEAGQRADNFERERILTEITGAW-TPELLEEWRRYA-RAFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGA--EGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEGGVGAWEKAGRRVRDS 782
R +IY C G + G+ + V G +FL NQIR +VGGA+AVA+ AL + ++ P+APAEGL L +FG KS + ++ + E+A V+ LL+++ + F E I EI+ +W E ++ WR Y R + +E + E A L E A+ +AT K + + L G VGAL +P++FAT L +R+ + PG ++ R + + G++P DA E++ ++ G K GR++R S
Sbjct: 300 RRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPN----TELAKERKDVVHRVLLNRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCYEANERLNQD---------ELSAVLYEMDQAK-------LATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILGYIDNYGPAN-LAKEGRKLRLS 571 The following BLAST results are available for this feature:
BLAST of EWM28549.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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