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Properties
| Property Name | Value |
|---|
| Product | pas-domain protein |
| Orig transcript id | gnl|cribi|Naga_100009g104.653.mrna |
| Orig protein id | gnl|cribi|Naga_100009g104.653 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:793218..796477 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2060 ID=rna2060|Name=rna2060|organism=Nannochloropsis gaditana|type=mRNA|length=585bp
ATGGCCTCCCATAGGCCTGGCGTGACTCGGAGCCGCGAGACCGCTGACGC
CCTCGGCGAGGAAGACAAAAAATTGCGCGAAAGCTGCAGCAGGGACCTGG
GCTCTGGGGTCCATGCTTGGAGAAAAGAACTTCCGCGTGCAAGACTTCGC
GTGATACACGTAGCGTTTGTGATTTGCCTATTTTTCTATGTACAAACGCT
GTTACATGCTCCAACAACTTTCCAACGAAACGAGGGCTTTTTTCATCTCA
GTCCGGACAACAATATCGACGAAATAGGAGTTTCGTTTTACAAAATACGT
TTCAGCTGCCAAAATCTCAACGCCAACATTAAGGCAGCTATGATTCCGCT
TATATCCTCCGTTCTTGAACCTTCACCCTCCATCAATTACGATTTCGTGG
CGGGATCGTATTTTATCGCCTCTCTTCTGTGTCTGGCCCTGGCGGTATCG
TCGCTTGTCTTCGAGGTCTCATCTGTAAAGGGATGGTGGATTGCCCTTGC
ACCGTTTCCACCAGCGCTTGTTTGGAGCTTGATAGTAAGAGCAAGGTGGC
ATTTGGCACTTGAATCGAAGACCAAGGTGGAGTAG back to topprotein sequence of rna2060 >rna2060-protein ID=rna2060-protein|Name=rna2060|organism=Nannochloropsis gaditana|type=polypeptide|length=580bp
MRRKHPCCSRTPPRPPLTRLFPCQYASTSIPQGPPTHAHTAPPLQPTSAY
SRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELV
NGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAAS
KGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANK
INDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGT
EPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQK
ETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRV
SSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPH
PAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQIS
LLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQ
RQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAA
SVVDRATAIPRPAPRPTTRQGSQSRALSPL back to topmRNA from alignment at CM002458.1:793218..796477+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2060 ID=rna2060|Name=rna2060|organism=Nannochloropsis gaditana|type=mRNA|length=3260bp|location=Sequence derived from alignment at CM002458.1:793218..796477+ (Nannochloropsis gaditana)
TTTGTCGCGTCCACTGCGCCCCCTCGCACTTTCTTCGAGGACAACGTCAG
ACATGCCGCCTCAAAGATTTTGTTCTGATTCCGCGTAATCGAGCTTGAGG
ACTGcacaccatcccttcccacGGGCCAAAGCAATTTGCGCTTTTATGAT
GCATGCATCTTCTGTGTCAATGATATGTCTTGCACAACAATGTCATGGCA
CAGGCAACGTCGACCACTTCATATAAGCTGCCGGGGCTACCAACATCCAA
GTCCATCTTAAACAGCAAGAAGAGATACGACGTCGGCCATCAGGAAACTG
GGTCGCTGCTCGAGCCAAGACCAAGtagggggaagaggcgggctGTCATC
GGCACGACGGCGTCTTCGTTTGCAGCATGGAAGCAGATTTTGTGCGTAAC
TCGAGAGACGATTCAATTTTATGACCTTCCGACTCACGCCGCTCAATATT
CCTGCGTGCTCTCATATGTTTTTGGTGCACCACAGGGTCGTTCGTCTCTA
GTCAACTCTTCCAATATGCCGGGCAATGTAATGgtaagcaagaggaaggt
gccGAAACGGAGCGGGTTTTCAGCAAACCTGAGGAGAAGAAGTAAAACGT
AGAGCTGAACTCTGATCGTTACATTTCGGTCCGCACATCAACAGTCGCAG
CCCTCAAATGGCGGATGGCCGACCTCGAATCATGCGGTGAGTGTATACGC
GGCAGAGCAGGGGTGCGGGCGCGGTTAGAGCGTCACGATTCGAAGCGTTT
CTCCAGGCATGCATCCCGAGATATGAGCCTCGAGCGTGTTCCTCACGGCC
TCATCCTACTTACCAATTGCACCGCCAACGTTCTCTTTGCATTGCGGGGC
CTGCCAATCTCACCATGTCGGCCTTGCTTTTGAATGCGCAGAAAGCATCC
ATGTTGCTCACGgacccctcctcgcccgcccttgactcgcctctttccct
gccaGTACGCGTCTACCTCCATCCCTCAGGGTCCTCCCACCCATGCCCAC
ACTGCGCCCCCTCTTCAGCCAACATCAGCCTATTCGCGCTGGCTCTATGA
AGGCGGAGCGGGGACAGGCGCTGCGCCCAGCCTTCCATATCCACAGCAAA
ATCAACCACCATCgcagccaccgccaccgccgcagCAGACTGGCGAAAGT
TGGATcccgggggccgggggaggagagctggtcaatggggggaggagaat
agGAGAGgcacgcgggggaggagaaggaggggaaggaggagcaggaggaa
ccGCGCGGCCGCAGACGTTGGGGTATTGGGGGGCTAGCATGCCCAGCGCG
GGCTACAGTGGtagtgggggaggggcggcgagcaaagggagcgagagcga
cTCCTCGGACGAGGGCAGCACAGCCCGTCCTGGCGGGGCCAAGGGGCGGA
AGCTGCCGTCGAACGGCCGGGACTCCTCGGAGCTGGAGAAGCGCCTGAAG
AAGAATGCCCGGGAGCAAAAGCGCGCGAACAAGATCAACGACCAGATCGC
CATCATGAAGACGATCCTGGAGTCTGTGGGGCTTCGTCCGCCTCCCACCA
agtcctccatcctcgccgAGGGCATTCAGCTCATCCGCAGCCTGCTCGCG
CAGGTCGGCCCCGAGGGCAAGGCGCCAGGCACCGAGCCCAGCCAGGCGGA
GCCCTACTGGCTTCTGTTCCGGAAGTCCGCCACGCCCCTGGCCATGTGCC
GGCcggacgggcacgggcgcTTTCTGGACTGCAACACCCGCTTCTGCGAG
GTCTTTGGGTGCACGCCcgaggagctgcagaaggagacgcccctctcctt
cacccgCGAGTACGACGCGGAGAACACCCAGCGGGTCCTGGCCCTGGTGA
GTCAGCCTGGGCTCTTGGACGAGAGCTCTcccctggaggtggtgctcaCC
AACAAGCACCAGCAGCGCTTCCTCGttcgcgtctcctccctcctggacga
CTATCAGAagccgcgcttcctcctcttcacacCCAAGGCCATGCTCCGGG
GCGTGAACGGACAGgaaccctcctccgccccgccctcctccttcgcctct
gccccgcccctcccttcgcagcccgccccccaccccgcGGTTTTGGCCGG
CCCCGTAGCCCcgcccctcgttccctcccagtcctccatgccttcctccg
ccgcctcctcctcctcctcgctgggCGCCATGCTGCCCATTCCCATCAGT
CAAGCTCCCGACCCACACTTGCCGCagatctccctcctctccccgcagGC
ACCGCCCACTCGCGAGCCTCGAGCCCCCCACATCCACAATCAGCCCCATC
ACCAGCACTACCAGCAACATCTACACCACATCCTCCAGCAGCACAACCCA
GGATCGCCGCAAGACGCGCCGCCAccgcagcagcggcagcaccAAGCCTT
TCCTGCCGCCGTGCAGGaggcatcctccccctctccccaggCGGGACGCG
TGGCCGAGAACGATCAGaagccttcccctccccctcttcccttcaacctt
cgtttccctcctctttctacAACGGAGGCCGCGTCGGTGGTGGACCGAGC
AACAGCCATTCCTCGCCCCGCTCCTCGCCCAACAACTCGTCAAGGGAGCC
AGTCTCGGGCATTGTCTCCCCTTTGACcacagctcctccgccaacaCTAA
AGCCGAGCGGCAAGAGTCAAGAAGCGGCTGTCTAATCGCGCGCGGAATTT
GAACGAAGCCTGTGCACGGGAAGACGGACCCAAAGGCCAAAATTGAAACA
GGCACAGCTGAAAACGGAATGTTTATGAATAGGAACTCGCCTCAGGGAAC
CGGCTTATCGGGAATATGACGTGTCCGGGAATGGAGGCATTGTATCAAAA
GATCTTGACGACACAAATACGGACTCGAAATGAGTTGACATGGCGAACGA
AAGGAAATGGTAGAtccgggaaggggaaggagatctATCGTTCACAGAAG
CTAGCGCGTGGCGTGCTCCTGGTTGTGTACGCGAATGATATGTGTGGACC
GGAATTAGTGCCCTTGTATGTGCGTGTGTGGCGGTTGGCACAAGCAAAGC
GCCTACAACATCCATAACGAAACGCAGACGGCGAGGCCGAGCTATCCCGT
TCGTTCTTGCACTTTTGTCGACGTGACGTCACTGTCTCCCCCCGACGTTT
ACCCTGGCGAGCCTCCCAGCCGCCAAGCCCCCACCAGGTTCAGGGCATTG
GggtccgcccttcctttgtgCATTCCCCTCTTACTCCcccactctcctcc
ctttcctcgc back to topCoding sequence (CDS) from alignment at CM002458.1:793218..796477+ >rna2060 ID=rna2060|Name=rna2060|organism=Nannochloropsis gaditana|type=CDS|length=1743bp|location=Sequence derived from alignment at CM002458.1:793218..796477+ (Nannochloropsis gaditana)
ATGCGCAGAAAGCATCCATGTTGCTCACGgacccctcctcgcccgccctt
gactcgcctctttccctgccaGTACGCGTCTACCTCCATCCCTCAGGGTC
CTCCCACCCATGCCCACACTGCGCCCCCTCTTCAGCCAACATCAGCCTAT
TCGCGCTGGCTCTATGAAGGCGGAGCGGGGACAGGCGCTGCGCCCAGCCT
TCCATATCCACAGCAAAATCAACCACCATCgcagccaccgccaccgccgc
agCAGACTGGCGAAAGTTGGATcccgggggccgggggaggagagctggtc
aatggggggaggagaatagGAGAGgcacgcgggggaggagaaggagggga
aggaggagcaggaggaaccGCGCGGCCGCAGACGTTGGGGTATTGGGGGG
CTAGCATGCCCAGCGCGGGCTACAGTGGtagtgggggaggggcggcgagc
aaagggagcgagagcgacTCCTCGGACGAGGGCAGCACAGCCCGTCCTGG
CGGGGCCAAGGGGCGGAAGCTGCCGTCGAACGGCCGGGACTCCTCGGAGC
TGGAGAAGCGCCTGAAGAAGAATGCCCGGGAGCAAAAGCGCGCGAACAAG
ATCAACGACCAGATCGCCATCATGAAGACGATCCTGGAGTCTGTGGGGCT
TCGTCCGCCTCCCACCAagtcctccatcctcgccgAGGGCATTCAGCTCA
TCCGCAGCCTGCTCGCGCAGGTCGGCCCCGAGGGCAAGGCGCCAGGCACC
GAGCCCAGCCAGGCGGAGCCCTACTGGCTTCTGTTCCGGAAGTCCGCCAC
GCCCCTGGCCATGTGCCGGCcggacgggcacgggcgcTTTCTGGACTGCA
ACACCCGCTTCTGCGAGGTCTTTGGGTGCACGCCcgaggagctgcagaag
gagacgcccctctccttcacccgCGAGTACGACGCGGAGAACACCCAGCG
GGTCCTGGCCCTGGTGAGTCAGCCTGGGCTCTTGGACGAGAGCTCTcccc
tggaggtggtgctcaCCAACAAGCACCAGCAGCGCTTCCTCGttcgcgtc
tcctccctcctggacgaCTATCAGAagccgcgcttcctcctcttcacacC
CAAGGCCATGCTCCGGGGCGTGAACGGACAGgaaccctcctccgccccgc
cctcctccttcgcctctgccccgcccctcccttcgcagcccgccccccac
cccgcGGTTTTGGCCGGCCCCGTAGCCCcgcccctcgttccctcccagtc
ctccatgccttcctccgccgcctcctcctcctcctcgctgggCGCCATGC
TGCCCATTCCCATCAGTCAAGCTCCCGACCCACACTTGCCGCagatctcc
ctcctctccccgcagGCACCGCCCACTCGCGAGCCTCGAGCCCCCCACAT
CCACAATCAGCCCCATCACCAGCACTACCAGCAACATCTACACCACATCC
TCCAGCAGCACAACCCAGGATCGCCGCAAGACGCGCCGCCAccgcagcag
cggcagcaccAAGCCTTTCCTGCCGCCGTGCAGGaggcatcctccccctc
tccccaggCGGGACGCGTGGCCGAGAACGATCAGaagccttcccctcccc
ctcttcccttcaaccttcgtttccctcctctttctacAACGGAGGCCGCG
TCGGTGGTGGACCGAGCAACAGCCATTCCTCGCCCCGCTCCTCGCCCAAC
AACTCGTCAAGGGAGCCAGTCTCGGGCATTGTCTCCCCTTTGA back to top
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