EWM28610.1, cds2052 (CDS) Nannochloropsis gaditana

Overview
NameEWM28610.1
Unique Namecds2052
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:794101..795843 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28610.1
Productpas-domain protein
Orig transcript idgnl|cribi|Naga_100009g104.653.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:794101..795843 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR000014PAS
Homology
BLAST of EWM28610.1 vs. NCBI_GenBank
Match: gi|585111028|gb|EWM28610.1| (pas-domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1154.04 bits (2984), Expect = 0.000e+0
Identity = 580/580 (100.00%), Postives = 580/580 (100.00%), Query Frame = 0
Query:    1 MRRKHPCCSRTPPRPPLTRLFPCQYASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL 580
            MRRKHPCCSRTPPRPPLTRLFPCQYASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL
Sbjct:    1 MRRKHPCCSRTPPRPPLTRLFPCQYASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL 580          
BLAST of EWM28610.1 vs. NCBI_GenBank
Match: gi|585111027|gb|EWM28609.1| (pas-domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1102.81 bits (2851), Expect = 0.000e+0
Identity = 556/556 (100.00%), Postives = 556/556 (100.00%), Query Frame = 0
Query:   25 YASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL 580
            YASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL
Sbjct:   36 YASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL 591          
BLAST of EWM28610.1 vs. NCBI_GenBank
Match: gi|960351392|gb|ALR84571.1| (bHLH transcription factor 2 [Nannochloropsis salina])

HSP 1 Score: 709.909 bits (1831), Expect = 0.000e+0
Identity = 492/534 (92.13%), Postives = 501/534 (93.82%), Query Frame = 0
Query:    1 MRRKHPCCSRTPPRPPLTRLFPCQYASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGS----TARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQ-SSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQK 529
            MRR HPCCSR PPRPPLTRLFPCQY STSIPQGPPTHAHTAPPLQPTSAY RWLYEGGAGTGAAPSLPYPQQ+QPPSQPPPPPQQTG SWIPGAGGGELVNGGRRIGEARGGGEGGEGG GGTARPQTLGYWGA +PSAGYSG G G     +   S  + S    TARPGG KGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQ+GPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAV AG VAPPL+PSQ S+MPSSA+SSSSSLGAMLPIPISQAPDP LPQISLLSPQAPPTREPRAPHIHNQ HHQHYQQHLHHILQQHNPGSPQDAPP QQRQ QAFPAA+QEASS SPQAGRVAENDQK
Sbjct:    1 MRRMHPCCSRPPPRPPLTRLFPCQYGSTSIPQGPPTHAHTAPPLQPTSAYPRWLYEGGAGTGAAPSLPYPQQHQPPSQPPPPPQQTGGSWIPGAGGGELVNGGRRIGEARGGGEGGEGGTGGTARPQTLGYWGAGVPSAGYSGGGLGGGGGAASKGSESDSSDEGSTARPGGGKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQIGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVSAGTVAPPLMPSQSSTMPSSASSSSSSLGAMLPIPISQAPDPLLPQISLLSPQAPPTREPRAPHIHNQLHHQHYQQHLHHILQQHNPGSPQDAPPQQQRQQQAFPAALQEASSSSPQAGRVAENDQK 534          
BLAST of EWM28610.1 vs. NCBI_GenBank
Match: gi|1154259166|gb|AQX45500.1| (bHLH transcription factor [Aurantiochytrium sp.])

HSP 1 Score: 676.396 bits (1744), Expect = 0.000e+0
Identity = 456/534 (85.39%), Postives = 467/534 (87.45%), Query Frame = 0
Query:    1 MRRKHPCCSRTPPRPPLTRLFPCQYASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPG-TEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPE-ELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQ-SSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPS 531
            MRR HP CS   PRPPLTRLFPCQY STSIPQGPPTHAHTAPPLQPTSAY RWL   GAGTGAAPSLPYPQQ+QPPS PPPPPQQTG SWIPGAGGGELVN   RIGEARGGGEGGEGG GGTARPQTLGYWGA +PSAGY      +     +  SSDEGSTARPGG KGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQ+GPEGKAPG TEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPE ELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAV AG VAPPL+PSQ S+MPSSA+SSSSSLGAM      QAPDP LPQISLLSPQAPPTREPRAPHIHNQ HHQHYQQHLHHILQQHNPGS         +         Q+A   +PQAGRVAEND  PS
Sbjct:    1 MRRMHPSCS---PRPPLTRLFPCQYGSTSIPQGPPTHAHTAPPLQPTSAYPRWL---GAGTGAAPSLPYPQQHQPPSFPPPPPQQTGGSWIPGAGGGELVN---RIGEARGGGEGGEGGTGGTARPQTLGYWGAGVPSAGY------SGGGLGDGGSSDEGSTARPGGGKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQIGPEGKAPGKTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEAELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVSAGTVAPPLMPSQSSTMPSSASSSSSSLGAM-----RQAPDPLLPQISLLSPQAPPTREPRAPHIHNQLHHQHYQQHLHHILQQHNPGS--------PQDAPPQQQRQQQAFPAAPQAGRVAENDHPPS 506          
The following BLAST results are available for this feature:
BLAST of EWM28610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585111028|gb|EWM28610.1|0.000e+0100.00pas-domain protein [Nannochloropsis gaditana][more]
gi|585111027|gb|EWM28609.1|0.000e+0100.00pas-domain protein [Nannochloropsis gaditana][more]
gi|960351392|gb|ALR84571.1|0.000e+092.13bHLH transcription factor 2 [Nannochloropsis salin... [more]
gi|1154259166|gb|AQX45500.1|0.000e+085.39bHLH transcription factor [Aurantiochytrium sp.][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2060rna2060Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications