rna206, rna206 (mRNA) Nannochloropsis gaditana

Overview
Namerna206
Unique Namerna206
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2141
Alignment locationCM002455.1:531980..532926 +

Link to JBrowse

Properties
Property NameValue
Productmitochondrial import inner membrane translocase subunit tim16
Orig transcript idgnl|cribi|Naga_100013g10.9800.mrna
Orig protein idgnl|cribi|Naga_100013g10.9800
GeneTIM16
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:531980..532926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TIM16gene197Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna206rna206-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30512.1cds206Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna206 ID=rna206|Name=rna206|organism=Nannochloropsis gaditana|type=mRNA|length=2141bp
TTCCCGCAAGACTCACCAAAAACATTTCCGTTTCGCAAAATGTGCCGGTC
GATACGTGAAAACCCGCATCACACACCCGTGGGCACCCACAGACAAATGC
GCCATCGGAAATTTGCCACCTTTATGGACTCAGAGGCGGTCTCGACGGGA
AACCATTCCACCTTCGCGCTTCCGCCTCCGATTTGTGTTCCTGAGCGTGA
AGTGATGCGTGCCTCCCCATGGAGGCCACGCGCCGCGTGACAAACAGTCT
GCTCCAAGACATTCATTTCATTTTTAGTTTTCGAACATTCACAGCTTTTG
TTCGATATACAGCACATACAGACTCTTCACACCATGACACGGCCGCAATT
TTCACACCACCGCCCCCGCGAAAGCAAATCGTTCTCGTCTGGAACATTGC
TTCTCCTCACGTTTATTTTACTTCTTCCCGGGCCCGCGTCCGCGTTTTGC
CGCGTACACTCCTCGAAAGCTCCCTCTATGTCACTCCAACCTGACTCCTC
ACCTCTCTCCATTCCGCGCGTTGATCTGCTTAAGGGAATGGGCATAGCTG
GCCTTGGAGTTGCAGGTGTCAGCGGCATCGGGGCCGTTAAGGCAGCACAG
GCAGAGGCAAACGTGATTGTGCGCCGCCCTTTTCTATCCGAACGCATCTT
CGACACCAGAAGGCGGTCTTTTCTGCCCGCCGAGGTGAACCGTTTGATGC
ATAACAAGGCGCTCGACCAGCGCGTCGTGTGCATCGGTGAAGTCCACAAC
GATGACGCCCAGCACTACGCGGAGTACTCTATCCTGCAAGCCGTGCACAA
AAGGCGAGGGGCCACGGGCCTAACTGTGGGCCTGGAGATGTTTTATCGAC
AGCACCAAGCCATTTTGGACGACTACGTGTTTGGGAAGGGCACGCTGGCC
TCGCTCAAGGAGGATACCAAGTGGGACAAGACCTGGGGCCACAAGATGGC
TTCATACGCGAAGATCTTCCAGTACGCCAAAGCCCACGGCATCCGTCTTT
GCGGCCTCAATGTCCCCCAGCCAGTTGTGCAAGTGGTGCGGCAAATGGGT
CTCGAACACATTCCGGAGGAGCTGCGCCGGCGCCTGCCCGCGGTGGTCGA
TCTCAGCAATACCGCCCACCGAGAGGACTTCCTGGCCACTATGCGCTACT
TTGCCAGTTTCCACGGGGGCGCCAAGGGGGGAGGCATACCGGAGGAGGCT
CTTGAACGACTGTACGAGGCACAGACGTTGTGGGACGAATACATGGCGGA
GAGCGCGGCGCACATCCTGGAGGCTGACCCGCGGAGTCGGATGATCGTCT
TGGCGGGAACCAACCACATACAAAACAGGTATGGTGTGCCCGATCGCATC
ATGCGGCGCCTAGGGGGCCAACCTGTCTTTACGATTCTGCCCGTTTCCGT
CAAATTCGACGCTGTGACATCCTTGCCGATGATAGGCGACGGGGAGAGCT
ACGATACTCGACTGGGGGACTGGGTGTATTTCATTGAGAAAGCCTGAACA
GGAACGGGGATGGGAAGCGACACGAGAGCACGGAGGAGCTTTTTTTTCCA
TGGCAAGGAAGCTTTGAGATGTAAAAAATGTAAATTGTAAAAGTGGCGAG
GCAGGTCAGGTGGGCAGTGAATAGCTGGGAGAGGAAGTATAAATACATGG
GAAGTGCACTCTAGATGTAGGAGTTGGCAATAGATTAATGGAAGAAAGAC
ACGACGATCATGTCGCCCTTGATGGTGTTTGACCCGACAGTAAGATCGAA
ACCTGTGAATTATCAGGCCATGCGAAAGGTGTCTGTAAAATTTCAGTTCC
TTGGCTTCTGCAGACCAAGCTAGGGGCATACAGATGGCGGGTTTTGGGTC
AAAACTTCAGGTCGAAACGTGTTGAAGTTGTATTGTACTTGGATACGCTT
GTCCCGAAAGCAAAAGTGAGCTGGCGGGCATGAAGCTCATTTTGTACTTT
TTTTGGGTAAATTGAAACTTGTGGCAATTAAATCAAGCAGGATGCGCAGT
ACGAAAGAAGAAGAGCTTCGTTGCGGGGACCAAACCGCAAATGTAGGCCA
GAAGGAATTGGTATTTTTCAGCCACGAACGTCATGATAAAATCTATCCAT
CCATTACTTGGTGCGTCGATCAAATGTACACTCCATGCCAA
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protein sequence of rna206

>rna206-protein ID=rna206-protein|Name=rna206|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTY
GGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKV
YRAKECLERAIKAEKAKAGKARSEAEEARRENAQKRG
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mRNA from alignment at CM002455.1:531980..532926+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna206 ID=rna206|Name=rna206|organism=Nannochloropsis gaditana|type=mRNA|length=947bp|location=Sequence derived from alignment at CM002455.1:531980..532926+ (Nannochloropsis gaditana)
GTTTTCACGTATCGACCGGCACATTTTGCGAAACGGAAATGTTTTTGGTG
AGTCTTGCGGGAACCGAGAGCTTGTGTCGTCACTACCAGCTAGGCCGCCC
GCCCCTCAACACCATGCGCAGCTCGCTGTGCACTCGAAAGCAAGGATCTG
AAACTCCACGGAAGAGGGATGATGGACGCCAGTGCATCATGCTGGGATTT
TGTACGCGCGGTTTAATGGTGTACACGTCCTTTAGACTTTCGAAGTTTGA
AGCACGGTTTACGATCTGCTAGGACTGAGAAGGTGGCTGATGTTTGCCGC
GTTGAATCACTCATTTCTGATGGTGTAGGAAACTCATAATGTTCCCATCG
ATACCGTACAGGTGGGCTACATTTACAATAAGCATACCGCCTTGCGGTTC
CCACCCTCACCTCGCGGTTAGGCCCGCACCCCGTAGGCCTTTGatatcct
ttcctcccaggaaCGATGAGCGGCCCTTTCGTCCGCATGCTCGTCAATAT
TGCCGTCATGTCAGCATCTGTCTTCTCGCGTGCTTTCGTTGCAGCCTATC
ATCAAGCGCTGCAAAACGCTAAACAGGGTGGCGGCACGGCTGCCAAAGCA
GCCTCTCGCACGTACGGCGGAATGGCCCCTGACGAGGCCCTGAAGGTCTT
AAATCTTCAGAAGACAGACTTGAAGTCCTCCGCCCGCATCATTGAGCAGT
TTGACAAATATTTTTCACAGAACGAACCCGGCAAAGGAGGTTCTTTCTAT
CTGCAATCGAAGGTCTACCGGGCGAAGGAGTGTCTGGAACGGGCTATCAA
AGCGGAAAAAGCGAAAGCTGGGAAGGCGAGGtcggaggctgaggaggccC
GGCGGGAGAATGCTCAAAAGCGAGGATAACATAAGCGTACAAAAGCATGA
AAGAACTGTATCATGATCCGTTTGGGATGGGTGAAAGGCTTACAAAA
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Coding sequence (CDS) from alignment at CM002455.1:531980..532926+

>rna206 ID=rna206|Name=rna206|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at CM002455.1:531980..532926+ (Nannochloropsis gaditana)
ATGAGCGGCCCTTTCGTCCGCATGCTCGTCAATATTGCCGTCATGTCAGC
ATCTGTCTTCTCGCGTGCTTTCGTTGCAGCCTATCATCAAGCGCTGCAAA
ACGCTAAACAGGGTGGCGGCACGGCTGCCAAAGCAGCCTCTCGCACGTAC
GGCGGAATGGCCCCTGACGAGGCCCTGAAGGTCTTAAATCTTCAGAAGAC
AGACTTGAAGTCCTCCGCCCGCATCATTGAGCAGTTTGACAAATATTTTT
CACAGAACGAACCCGGCAAAGGAGGTTCTTTCTATCTGCAATCGAAGGTC
TACCGGGCGAAGGAGTGTCTGGAACGGGCTATCAAAGCGGAAAAAGCGAA
AGCTGGGAAGGCGAGGtcggaggctgaggaggccCGGCGGGAGAATGCTC
AAAAGCGAGGATAA
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Synonyms
Publications