EWM30512.1, cds206 (CDS) Nannochloropsis gaditana

Overview
NameEWM30512.1
Unique Namecds206
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:532445..532858 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30512.1
Productmitochondrial import inner membrane translocase subunit tim16
Orig transcript idgnl|cribi|Naga_100013g10.9800.mrna
GeneTIM16
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:532445..532858 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0030150protein import into mitochondrial matrix
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
GO:0005744TIM23 mitochondrial import inner membrane translocase complex
Vocabulary: INTERPRO
TermDefinition
IPR005341Tim16
IPR001623DnaJ_domain
Homology
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|585113176|gb|EWM30512.1| (mitochondrial import inner membrane translocase subunit tim16 [Nannochloropsis gaditana])

HSP 1 Score: 277.715 bits (709), Expect = 1.525e-94
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSEAEEARRENAQKRG 137
            MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSEAEEARRENAQKRG
Sbjct:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSEAEEARRENAQKRG 137          
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|298709231|emb|CBJ31171.1| (Mitochondrial import inner membrane translocase subunit TIM16 homolog [Ectocarpus siliculosus])

HSP 1 Score: 112.464 bits (280), Expect = 5.049e-29
Identity = 59/118 (50.00%), Postives = 86/118 (72.88%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLER--AIKAEKA 116
            M+ PF R++  +AV SA + SRAFV+AY QA+ NA+ G   +AKA SRT   ++  EA+++LNLQK ++K    I +++D+YF  N+P KGGSFYLQSKV+RAKE L+   A++A++A
Sbjct:    1 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRT-SKLSTLEAMQILNLQKGEMKPDL-IKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQA 116          
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|695435112|ref|XP_009531597.1| (hypothetical protein PHYSODRAFT_562549 [Phytophthora sojae] >gi|348674349|gb|EGZ14168.1| hypothetical protein PHYSODRAFT_562549 [Phytophthora sojae])

HSP 1 Score: 105.145 bits (261), Expect = 1.377e-26
Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKT-DLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSE 124
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M+  +A ++LN   +  + SS  I +QF +YF  N+P KGGSFYLQSK++RAKE LER    E+A A  A  E
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARTGNTGAMAAKTVVRK-NQMSKQQAREILNFPTSGPVPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKDPDEEAPASDAAKE 126          
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|1210520377|dbj|GAX20808.1| (hypothetical protein FisN_7Hh121 [Fistulifera solaris])

HSP 1 Score: 102.834 bits (255), Expect = 1.604e-25
Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = 0
Query:    3 GPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEP--GKGGSFYLQSKVYRAKECLERAIKAEK 115
            GP  R++  + V + +V  RA  AAY QAL NAK+GG TAA+A +R    M+ +EAL++LNL + +  ++  I +QF+KY S NE   G GGSFYLQSKVYRAKE L+  I  +K
Sbjct:    4 GPLARIIAQVIVPAIAVLVRALPAAYAQALGNAKKGGVTAAQAVTRK--AMSKEEALQILNLHQEEKLTAEAIQKQFEKYMSANEVKRGGGGSFYLQSKVYRAKELLDEFIDEKK 116          
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|1210529646|dbj|GAX11740.1| (hypothetical protein FisN_7Lh121 [Fistulifera solaris])

HSP 1 Score: 102.449 bits (254), Expect = 1.808e-25
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    3 GPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEP--GKGGSFYLQSKVYRAKECLERAIKAEK-AKAGKARS 123
            GP  R++  + V + +V  RA  AAY QAL NAK+GG TAA+A +R    M+ +EAL++LNL + +  ++  I +QF+KY S NE   G GGSFYLQSKVYRAKE L+  +  +K  +  KARS
Sbjct:    4 GPLARIIAQVIVPAIAVLVRALPAAYAQALGNAKKGGVTAAQAVTRK--AMSKEEALQILNLHQEEKLTAEAIQKQFEKYMSANEVKRGGGGSFYLQSKVYRAKELLDEFVDEKKEEQETKARS 125          
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|675184073|ref|XP_008900921.1| (hypothetical protein PPTG_08556 [Phytophthora parasitica INRA-310] >gi|567968006|gb|ETK93160.1| hypothetical protein L915_03605 [Phytophthora parasitica] >gi|567996467|gb|ETL46577.1| hypothetical protein L916_03550 [Phytophthora parasitica] >gi|568025710|gb|ETL99714.1| hypothetical protein L917_03468 [Phytophthora parasitica] >gi|568056151|gb|ETM52867.1| hypothetical protein L914_03580 [Phytophthora parasitica] >gi|568099145|gb|ETN13863.1| hypothetical protein PPTG_08556 [Phytophthora parasitica INRA-310] >gi|570334048|gb|ETO81996.1| hypothetical protein F444_03783 [Phytophthora parasitica P1976] >gi|570960091|gb|ETP25070.1| hypothetical protein F441_02025 [Phytophthora parasitica CJ01A1] >gi|570993883|gb|ETP51116.1| hypothetical protein F442_03688 [Phytophthora parasitica P10297] >gi|970630110|gb|KUF77154.1| Mitochondrial import inner membrane translocase subunit tim16 [Phytophthora nicotianae] >gi|970649043|gb|KUF88418.1| Mitochondrial import inner membrane translocase subunit tim16 [Phytophthora nicotianae])

HSP 1 Score: 102.449 bits (254), Expect = 2.025e-25
Identity = 57/119 (47.90%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKT-DLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKA 116
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M   +A ++LN   T    SS  I +QF +YF  N+P KGGSFYLQSK++RAKE LER    E+A
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGAMAAKTVVRK-NQMPKQQAREILNFPTTGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKEPDEEA 118          
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|566030405|gb|ETI53316.1| (hypothetical protein F443_03713 [Phytophthora parasitica P1569])

HSP 1 Score: 102.449 bits (254), Expect = 2.069e-25
Identity = 57/119 (47.90%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKT-DLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKA 116
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M   +A ++LN   T    SS  I +QF +YF  N+P KGGSFYLQSK++RAKE LER    E+A
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNTGAMAAKTVVRK-NQMPKQQAREILNFPTTGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKEPDEEA 118          
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|673021150|ref|XP_008864536.1| (hypothetical protein H310_02717 [Aphanomyces invadans] >gi|574479467|gb|ETW06461.1| hypothetical protein H310_02717 [Aphanomyces invadans])

HSP 1 Score: 100.138 bits (248), Expect = 1.433e-24
Identity = 60/123 (48.78%), Postives = 75/123 (60.98%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGK--GGSFYLQSKVYRAKECLERAIKAEKAKAGKA 121
            MSG   R++ NI V  A V S+AFV AY QA+ NAK  G T   A       M+ ++AL+VLNLQ   + S A I +QFD+YF  NEP K  GGS+YLQSK+YRAKE L +   A     GK+
Sbjct:    1 MSGQIARLIANIVVAGAGVVSKAFVQAYQQAVVNAK-NGKTVETATVSLKNKMSKEQALEVLNLQ--GVPSIADIEKQFDRYFKANEPSKDGGGSYYLQSKIYRAKEALLKDHPATTPPPGKS 120          
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|301095593|ref|XP_002896896.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108543|gb|EEY66595.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 99.7525 bits (247), Expect = 2.525e-24
Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKT-DLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKA 118
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M   +A ++LN   +    SS  I +QF +YF  N+P KGGSFYLQSK++RAKE LE     E+A A
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGAMAAKTVVRK-NQMPKQQAREILNFPTSGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALEHKETDEEAPA 120          
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|1214695227|gb|OWZ09067.1| (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 98.9821 bits (245), Expect = 3.817e-24
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKTDL-KSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKA 116
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M+ ++A ++LN   +    SS  I +QF +YF  N+P KGGSFYLQSK++RAKE LE     E+A
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARTGNTGAMAAKTVVRK-NQMSKEQAREILNFPTSGAAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALEVKDPGEEA 118          
The following BLAST results are available for this feature:
BLAST of EWM30512.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113176|gb|EWM30512.1|1.525e-94100.00mitochondrial import inner membrane translocase su... [more]
gi|298709231|emb|CBJ31171.1|5.049e-2950.00Mitochondrial import inner membrane translocase su... [more]
gi|695435112|ref|XP_009531597.1|1.377e-2646.46hypothetical protein PHYSODRAFT_562549 [Phytophtho... [more]
gi|1210520377|dbj|GAX20808.1|1.604e-2549.57hypothetical protein FisN_7Hh121 [Fistulifera sola... [more]
gi|1210529646|dbj|GAX11740.1|1.808e-2548.39hypothetical protein FisN_7Lh121 [Fistulifera sola... [more]
gi|675184073|ref|XP_008900921.1|2.025e-2547.90hypothetical protein PPTG_08556 [Phytophthora para... [more]
gi|566030405|gb|ETI53316.1|2.069e-2547.90hypothetical protein F443_03713 [Phytophthora para... [more]
gi|673021150|ref|XP_008864536.1|1.433e-2448.78hypothetical protein H310_02717 [Aphanomyces invad... [more]
gi|301095593|ref|XP_002896896.1|2.525e-2446.28conserved hypothetical protein [Phytophthora infes... [more]
gi|1214695227|gb|OWZ09067.1|3.817e-2446.22putative mitochondrial protein [Phytophthora megak... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna206rna206Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications