EWM30512.1, cds206 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|585113176|gb|EWM30512.1| (mitochondrial import inner membrane translocase subunit tim16 [Nannochloropsis gaditana]) HSP 1 Score: 277.715 bits (709), Expect = 1.525e-94 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 Query: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSEAEEARRENAQKRG 137 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSEAEEARRENAQKRG Sbjct: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSEAEEARRENAQKRG 137
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|298709231|emb|CBJ31171.1| (Mitochondrial import inner membrane translocase subunit TIM16 homolog [Ectocarpus siliculosus]) HSP 1 Score: 112.464 bits (280), Expect = 5.049e-29 Identity = 59/118 (50.00%), Postives = 86/118 (72.88%), Query Frame = 0 Query: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLER--AIKAEKA 116 M+ PF R++ +AV SA + SRAFV+AY QA+ NA+ G +AKA SRT ++ EA+++LNLQK ++K I +++D+YF N+P KGGSFYLQSKV+RAKE L+ A++A++A Sbjct: 1 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRT-SKLSTLEAMQILNLQKGEMKPDL-IKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQA 116
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|695435112|ref|XP_009531597.1| (hypothetical protein PHYSODRAFT_562549 [Phytophthora sojae] >gi|348674349|gb|EGZ14168.1| hypothetical protein PHYSODRAFT_562549 [Phytophthora sojae]) HSP 1 Score: 105.145 bits (261), Expect = 1.377e-26 Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 0 Query: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKT-DLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSE 124 MSGP R++ + VM A + S+AFV AY QA+ NA+ G G AAK R M+ +A ++LN + + SS I +QF +YF N+P KGGSFYLQSK++RAKE LER E+A A A E Sbjct: 1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARTGNTGAMAAKTVVRK-NQMSKQQAREILNFPTSGPVPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKDPDEEAPASDAAKE 126
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|1210520377|dbj|GAX20808.1| (hypothetical protein FisN_7Hh121 [Fistulifera solaris]) HSP 1 Score: 102.834 bits (255), Expect = 1.604e-25 Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = 0 Query: 3 GPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEP--GKGGSFYLQSKVYRAKECLERAIKAEK 115 GP R++ + V + +V RA AAY QAL NAK+GG TAA+A +R M+ +EAL++LNL + + ++ I +QF+KY S NE G GGSFYLQSKVYRAKE L+ I +K Sbjct: 4 GPLARIIAQVIVPAIAVLVRALPAAYAQALGNAKKGGVTAAQAVTRK--AMSKEEALQILNLHQEEKLTAEAIQKQFEKYMSANEVKRGGGGSFYLQSKVYRAKELLDEFIDEKK 116
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|1210529646|dbj|GAX11740.1| (hypothetical protein FisN_7Lh121 [Fistulifera solaris]) HSP 1 Score: 102.449 bits (254), Expect = 1.808e-25 Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 0 Query: 3 GPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEP--GKGGSFYLQSKVYRAKECLERAIKAEK-AKAGKARS 123 GP R++ + V + +V RA AAY QAL NAK+GG TAA+A +R M+ +EAL++LNL + + ++ I +QF+KY S NE G GGSFYLQSKVYRAKE L+ + +K + KARS Sbjct: 4 GPLARIIAQVIVPAIAVLVRALPAAYAQALGNAKKGGVTAAQAVTRK--AMSKEEALQILNLHQEEKLTAEAIQKQFEKYMSANEVKRGGGGSFYLQSKVYRAKELLDEFVDEKKEEQETKARS 125
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|675184073|ref|XP_008900921.1| (hypothetical protein PPTG_08556 [Phytophthora parasitica INRA-310] >gi|567968006|gb|ETK93160.1| hypothetical protein L915_03605 [Phytophthora parasitica] >gi|567996467|gb|ETL46577.1| hypothetical protein L916_03550 [Phytophthora parasitica] >gi|568025710|gb|ETL99714.1| hypothetical protein L917_03468 [Phytophthora parasitica] >gi|568056151|gb|ETM52867.1| hypothetical protein L914_03580 [Phytophthora parasitica] >gi|568099145|gb|ETN13863.1| hypothetical protein PPTG_08556 [Phytophthora parasitica INRA-310] >gi|570334048|gb|ETO81996.1| hypothetical protein F444_03783 [Phytophthora parasitica P1976] >gi|570960091|gb|ETP25070.1| hypothetical protein F441_02025 [Phytophthora parasitica CJ01A1] >gi|570993883|gb|ETP51116.1| hypothetical protein F442_03688 [Phytophthora parasitica P10297] >gi|970630110|gb|KUF77154.1| Mitochondrial import inner membrane translocase subunit tim16 [Phytophthora nicotianae] >gi|970649043|gb|KUF88418.1| Mitochondrial import inner membrane translocase subunit tim16 [Phytophthora nicotianae]) HSP 1 Score: 102.449 bits (254), Expect = 2.025e-25 Identity = 57/119 (47.90%), Postives = 73/119 (61.34%), Query Frame = 0 Query: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKT-DLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKA 116 MSGP R++ + VM A + S+AFV AY QA+ NA+ G G AAK R M +A ++LN T SS I +QF +YF N+P KGGSFYLQSK++RAKE LER E+A Sbjct: 1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGAMAAKTVVRK-NQMPKQQAREILNFPTTGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKEPDEEA 118
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|566030405|gb|ETI53316.1| (hypothetical protein F443_03713 [Phytophthora parasitica P1569]) HSP 1 Score: 102.449 bits (254), Expect = 2.069e-25 Identity = 57/119 (47.90%), Postives = 73/119 (61.34%), Query Frame = 0 Query: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKT-DLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKA 116 MSGP R++ + VM A + S+AFV AY QA+ NA+ G G AAK R M +A ++LN T SS I +QF +YF N+P KGGSFYLQSK++RAKE LER E+A Sbjct: 1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNTGAMAAKTVVRK-NQMPKQQAREILNFPTTGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKEPDEEA 118
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|673021150|ref|XP_008864536.1| (hypothetical protein H310_02717 [Aphanomyces invadans] >gi|574479467|gb|ETW06461.1| hypothetical protein H310_02717 [Aphanomyces invadans]) HSP 1 Score: 100.138 bits (248), Expect = 1.433e-24 Identity = 60/123 (48.78%), Postives = 75/123 (60.98%), Query Frame = 0 Query: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGK--GGSFYLQSKVYRAKECLERAIKAEKAKAGKA 121 MSG R++ NI V A V S+AFV AY QA+ NAK G T A M+ ++AL+VLNLQ + S A I +QFD+YF NEP K GGS+YLQSK+YRAKE L + A GK+ Sbjct: 1 MSGQIARLIANIVVAGAGVVSKAFVQAYQQAVVNAK-NGKTVETATVSLKNKMSKEQALEVLNLQ--GVPSIADIEKQFDRYFKANEPSKDGGGSYYLQSKIYRAKEALLKDHPATTPPPGKS 120
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|301095593|ref|XP_002896896.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108543|gb|EEY66595.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 99.7525 bits (247), Expect = 2.525e-24 Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = 0 Query: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKT-DLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKA 118 MSGP R++ + VM A + S+AFV AY QA+ NA+ G G AAK R M +A ++LN + SS I +QF +YF N+P KGGSFYLQSK++RAKE LE E+A A Sbjct: 1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGAMAAKTVVRK-NQMPKQQAREILNFPTSGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALEHKETDEEAPA 120
BLAST of EWM30512.1 vs. NCBI_GenBank
Match: gi|1214695227|gb|OWZ09067.1| (putative mitochondrial protein [Phytophthora megakarya]) HSP 1 Score: 98.9821 bits (245), Expect = 3.817e-24 Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 0 Query: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKTDL-KSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKA 116 MSGP R++ + VM A + S+AFV AY QA+ NA+ G G AAK R M+ ++A ++LN + SS I +QF +YF N+P KGGSFYLQSK++RAKE LE E+A Sbjct: 1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARTGNTGAMAAKTVVRK-NQMSKEQAREILNFPTSGAAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALEVKDPGEEA 118 The following BLAST results are available for this feature:
BLAST of EWM30512.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|