rna2056, rna2056 (mRNA) Nannochloropsis gaditana

Overview
Namerna2056
Unique Namerna2056
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length813
Alignment locationCM002458.1:788480..789442 +

Link to JBrowse

Properties
Property NameValue
Productdelta( )-delta( )-dienoyl- mitochondrial-like protein
Orig transcript idgnl|cribi|Naga_100009g108.611.mrna
Orig protein idgnl|cribi|Naga_100009g108.611
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:788480..789442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g108gene1967Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2056rna2056-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28568.1cds2048Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2056 ID=rna2056|Name=rna2056|organism=Nannochloropsis gaditana|type=mRNA|length=813bp
ATGCTACGACCCCGAGCGGGTGTCTCAATGGCTGCCGTTGCTACCACAGC
CACACTTTTTTTCCTCGGCCGGGCGCGGGCCTCACCTCTTGTGGCTCAAG
CTGCCTTCCACGCGCCGCGAGGGTCTCCATCGAGCTATTCCCCGGCGGGT
GCGACATTAGTGTCCCGTGGAATTCGAACGCGCTCTGGCCCCGGCTCGGC
CATTGCCAATTCGATAAGACACGCGTGGGGCACGTTGCTTCGTTCAACTA
TGGTGGAGGAAGTCGACCCTGGGGAAGTGGAGGGCACTGATCTTCGCGTC
CTCAAGTATCCAGACCCTCGCCTCCGTGCAGCCAACGCGGAAATCACTGA
GTTTGGTCCGGAAGTGGCCGCTCTCGCCAAGGACATGTTCAAAGTCATGT
ACGCGATGAATGGTGTAGGGCTCGCGGCTCCTCAGGTGGGGGTCAACCAG
CGGCTGATGGTATTCAATCCCCAAGGGGACAGGCTCAAGTGGCTGAACGA
GGTCATCCTCTGCAATCCTGCGATCGTGGAGAAGTCGGGCAAGACGGACA
TAATGGAGGAAGGGTGCCTTTCTTTTCCGGGCATGGCTGGCGATGTTGAA
CGCTCTTTGACCATCAAGGTGACGTTTCAGAATGCTAAAGGAAAGAAGTT
TACCAAGAAGTTTCGTGACTGGGAGGCTCGCATCTTCCAGCATGAGTATG
ACCACCTGGATGGCGTGCTCTACATGGACCGGCTTGTGCCGGAATCCAAA
CAGAAGGTGCAGCCAGTGCTGGACAAGCTGGTTAGTGACTTCGGACCGGG
CGGTGCATTGTGA
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protein sequence of rna2056

>rna2056-protein ID=rna2056-protein|Name=rna2056|organism=Nannochloropsis gaditana|type=polypeptide|length=320bp
MLLRLSNLGHRPVLALQRHIGTYPAKFTTGASTARREMHFETLTIETNRS
DAPGVAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGK
VFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNA
IERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAAD
LGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLA
RATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSE
DIGKAVQGAMLKERPTFSKL
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mRNA from alignment at CM002458.1:788480..789442+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2056 ID=rna2056|Name=rna2056|organism=Nannochloropsis gaditana|type=mRNA|length=963bp|location=Sequence derived from alignment at CM002458.1:788480..789442+ (Nannochloropsis gaditana)
ATGCTTCTCCGTTTATCAAACCTTGGTCACCGTCCAGTTCTAGCTTTACA
ACGTCACATCGGCACGTATCCCGCAAAGTTCACAACCGGCGCGTCAACTG
CAAGACGAGAGATGCATTTCGAGACGCTTACCATCGAAACAAATCGCAGT
GACGCACCAGGCGTGGCTTTCGTCACAATTAATCGCCCACGCAAGCGTAA
TGCGATGAATAGTAAGTTTTGGGGAGAGTGCAAAGAAGTCTTTGACacgc
tgggggaggagggagaagtgcgCGCGGTGGTACTggcgggagcgggaaag
gTGTTTACCTCCGGCTTAGACTTGTCAGACATCGGCATCGACTTAATGGG
TGGAAGTGGCGGTGGCagtgagggagaaagcgtcGACGTGGCCCGGCAGG
CCTTCAAAATCAAGAGACATGTCACACGCATGCAAGAAGCCTTCAACGCC
ATCGAACGCATCCCTCAAcccgtggtggcggccaTTCACGGGGCATGTAT
CGGTGGGGGAATCGACTTGATAGCTGCATGTGACATACGGTACGCCTGTG
CAGAGACAATTTTTAGCatcaaggaggtggacatcGGCCTGGCGGCAGAC
TTAGGCACCCTGCAGAGGCTTCCGCGCGTGACCGGCAACGAAAGCTTGCT
GCGAGAGCTCGCTTTCACAGGACGCAATTTTTCGAGTGCCGAAGGACAGG
CATTAGGCTTGCTTAGCTCTGTCCTGCCCTCACCCGCGGAGACATTGGCG
AGAGCGACGGGTCTCGCCATGGAGATCGCACGCAAAAGCCCAGTGGCAGT
CGCAGGCACAAAGGCCAATTTGCTGTACTCTCGGGACCACAGCGTCCAAG
ATGGACTGAATTACATGACTACCTGGAACATGGCAGCATTGCAGAGCGAA
GACATCGGCAAGGCGGTCCAAGGGGCGATGCTGAAGGAAAGACCGACGTT
CTCGAAGTTgtga
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Coding sequence (CDS) from alignment at CM002458.1:788480..789442+

>rna2056 ID=rna2056|Name=rna2056|organism=Nannochloropsis gaditana|type=CDS|length=963bp|location=Sequence derived from alignment at CM002458.1:788480..789442+ (Nannochloropsis gaditana)
ATGCTTCTCCGTTTATCAAACCTTGGTCACCGTCCAGTTCTAGCTTTACA
ACGTCACATCGGCACGTATCCCGCAAAGTTCACAACCGGCGCGTCAACTG
CAAGACGAGAGATGCATTTCGAGACGCTTACCATCGAAACAAATCGCAGT
GACGCACCAGGCGTGGCTTTCGTCACAATTAATCGCCCACGCAAGCGTAA
TGCGATGAATAGTAAGTTTTGGGGAGAGTGCAAAGAAGTCTTTGACacgc
tgggggaggagggagaagtgcgCGCGGTGGTACTggcgggagcgggaaag
gTGTTTACCTCCGGCTTAGACTTGTCAGACATCGGCATCGACTTAATGGG
TGGAAGTGGCGGTGGCagtgagggagaaagcgtcGACGTGGCCCGGCAGG
CCTTCAAAATCAAGAGACATGTCACACGCATGCAAGAAGCCTTCAACGCC
ATCGAACGCATCCCTCAAcccgtggtggcggccaTTCACGGGGCATGTAT
CGGTGGGGGAATCGACTTGATAGCTGCATGTGACATACGGTACGCCTGTG
CAGAGACAATTTTTAGCatcaaggaggtggacatcGGCCTGGCGGCAGAC
TTAGGCACCCTGCAGAGGCTTCCGCGCGTGACCGGCAACGAAAGCTTGCT
GCGAGAGCTCGCTTTCACAGGACGCAATTTTTCGAGTGCCGAAGGACAGG
CATTAGGCTTGCTTAGCTCTGTCCTGCCCTCACCCGCGGAGACATTGGCG
AGAGCGACGGGTCTCGCCATGGAGATCGCACGCAAAAGCCCAGTGGCAGT
CGCAGGCACAAAGGCCAATTTGCTGTACTCTCGGGACCACAGCGTCCAAG
ATGGACTGAATTACATGACTACCTGGAACATGGCAGCATTGCAGAGCGAA
GACATCGGCAAGGCGGTCCAAGGGGCGATGCTGAAGGAAAGACCGACGTT
CTCGAAGTTgtga
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Synonyms
Publications