EWM28568.1, cds2048 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|585110986|gb|EWM28568.1| (delta( )-delta( )-dienoyl- mitochondrial-like protein [Nannochloropsis gaditana]) HSP 1 Score: 655.596 bits (1690), Expect = 0.000e+0 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
Query: 1 MLLRLSNLGHRPVLALQRHIGTYPAKFTTGASTARREMHFETLTIETNRSDAPGVAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKERPTFSKL 320
MLLRLSNLGHRPVLALQRHIGTYPAKFTTGASTARREMHFETLTIETNRSDAPGVAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKERPTFSKL
Sbjct: 1 MLLRLSNLGHRPVLALQRHIGTYPAKFTTGASTARREMHFETLTIETNRSDAPGVAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKERPTFSKL 320
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|554589391|ref|XP_005886041.1| (PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Myotis brandtii] >gi|521038303|gb|EPQ20080.1| Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Myotis brandtii]) HSP 1 Score: 309.686 bits (792), Expect = 2.723e-101 Identity = 148/269 (55.02%), Postives = 190/269 (70.63%), Query Frame = 0
Query: 55 VAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKERP---TFSKL 320
+ V +NRP KRNAMN FW E E F+ + ++ + RAVV++GAGK+FT+G+DL D+ DL+ G DVAR ++ ++ + R QE F+ IE+ P+PV+AAIHG CIGGG+DLI ACDIRY + F +KEVD+GLAAD+GTLQRLPRV GN+SL+ ELAFT R + E + GL+S + P L A LA EI+ KSPVAV GTK NLLYSRDHSV +GLNYMT+WNM+ LQ++DI K+VQ AM K+ P TFSKL
Sbjct: 67 ILHVQLNRPEKRNAMNKAFWSEMVECFNKIAQDADCRAVVISGAGKMFTAGIDLVDMASDLLQPQGD-------DVARISWYLRSLIARYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPRVIGNQSLVNELAFTARKMMADEALSSGLVSRIFPDKEVMLDAAFNLAAEISSKSPVAVQGTKINLLYSRDHSVAEGLNYMTSWNMSMLQTQDIVKSVQAAMEKKEPKSVTFSKL 328
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|1016649122|ref|XP_007524028.2| (PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Erinaceus europaeus]) HSP 1 Score: 306.605 bits (784), Expect = 4.236e-100 Identity = 151/294 (51.36%), Postives = 200/294 (68.03%), Query Frame = 0
Query: 30 GASTARREMHFETLTIETNRSDAPGVAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKER---PTFSKL 320
AS+ + ++E+L + + + V INRP KRNAMN FW E E F+ + ++ + RAVV++GAGK+FTSG+DL D+ DL+ G DVAR ++ +++ ++ QE F+ IE+ P+PV+AA+HG CIGGG+DLI ACDIRY + F +KEVD+GLAAD+GTLQRLPRV GN+SL+ ELAFT R + E GL+S V P L A LA EI+ KSPVAV G+K NLLYSRDHSV DGLN+MT+WNM LQ++DI K+VQ AM K++ TFSKL
Sbjct: 44 AASSEVPDHNYESLRVTAAQK---HILHVQINRPEKRNAMNRAFWSEMVECFNKIAQDADCRAVVISGAGKMFTSGIDLVDMASDLLQPKGD-------DVARISWYLRKLISTCQETFSVIEKCPKPVIAAVHGGCIGGGMDLITACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPRVIGNQSLVNELAFTARKMMADEALNCGLVSRVFPDKDVMLDAAFALAAEISSKSPVAVQGSKINLLYSRDHSVADGLNFMTSWNMGMLQTDDIMKSVQAAMEKKKLKDVTFSKL 327
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|558160605|ref|XP_006096738.1| (PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Myotis lucifugus]) HSP 1 Score: 305.834 bits (782), Expect = 9.281e-100 Identity = 147/269 (54.65%), Postives = 189/269 (70.26%), Query Frame = 0
Query: 55 VAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKER---PTFSKL 320
+ V +NRP KRNAMN FW E E F+ + ++ + RAVV++GAGK+FT+G+DL D+ DL+ G DVAR ++ ++ + R QE F+ IE+ P+PV+AAIHG CIGGG+DLI ACDIRY + F +KEVD+GLAAD+GTLQRLPRV GN+SL+ ELAFT R + E + GL+S + P L A LA EI+ KSPVAV GTK NLLYSRDHSV +GLNYMT+WNM+ LQ++DI K+VQ AM K+ TFSKL
Sbjct: 67 ILHVQLNRPEKRNAMNKAFWSEMVECFNKIAQDADCRAVVISGAGKMFTAGIDLVDMASDLLQPQGD-------DVARISWYLRSLIARYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPRVIGNQSLVNELAFTARKMMADEALSSGLVSRIFPDKEVMLDAAFNLAAEISSKSPVAVQGTKINLLYSRDHSVAEGLNYMTSWNMSMLQTQDIVKSVQAAMEKKELKSVTFSKL 328
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|584060503|ref|XP_006774713.1| (PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Myotis davidii]) HSP 1 Score: 305.449 bits (781), Expect = 1.419e-99 Identity = 147/269 (54.65%), Postives = 189/269 (70.26%), Query Frame = 0
Query: 55 VAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKER---PTFSKL 320
+ V INRP KRNAMN FW E E F+ + ++ + RAVV++GAGK+FT+G+DL D+ DL+ G DVAR ++ ++ + R QE F+ IE+ P+PV+AAIHG CIGGG+DLI ACDIRY + F +KEVD+GLAAD+GTLQRLPRV GN+SL+ ELAFT R + E + GL+S + P L A LA EI+ KSPVAV GTK NLLYSRDH+V +GLNYMT+WNM+ LQ++DI K+VQ AM K+ TFSKL
Sbjct: 67 ILHVQINRPEKRNAMNKAFWSEMVECFNKIAQDADCRAVVISGAGKMFTAGIDLVDMASDLLQPQGD-------DVARISWYLRSLIARYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPRVIGNQSLVNELAFTARKMMADEALSSGLVSRIFPDKEVMLDAAFNLAAEISSKSPVAVQGTKINLLYSRDHTVAEGLNYMTSWNMSMLQTQDIVKSVQAAMEKKELKGVTFSKL 328
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|641698741|ref|XP_008137851.1| (PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Eptesicus fuscus]) HSP 1 Score: 303.523 bits (776), Expect = 6.106e-99 Identity = 145/269 (53.90%), Postives = 190/269 (70.63%), Query Frame = 0
Query: 55 VAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLK---ERPTFSKL 320
+ V +NRP KRNAMN FW E E F+ + ++ + RAVV++GAGK+FT+G+DL D+ DL+ G DVAR ++ ++ ++R QE F+ IE+ P+PV+AAIHG CIGGG+DLI ACDIRY + F +KEVD+GLAAD+GTLQRLP+V GN+SL+ ELAFT R + E + GL+S + P L A LA EI+ KSPVAV GTK NLLYSRDHSV +GLN+MT+WNM+ LQ++DI K+VQ AM K + TFSKL
Sbjct: 66 ILHVQLNRPEKRNAMNKAFWSEMVECFNKIAQDADCRAVVISGAGKMFTAGIDLVDMASDLLQPQGD-------DVARISWYLRNLISRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVVGNQSLVNELAFTARKMMADEALSSGLVSRIFPDKEVMLDAAFNLAAEISSKSPVAVQGTKINLLYSRDHSVAEGLNFMTSWNMSMLQTQDIVKSVQAAMEKKDMKSVTFSKL 327
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|1016672445|ref|XP_016061973.1| (PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X2 [Miniopterus natalensis] >gi|1016672447|ref|XP_016061974.1| PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X2 [Miniopterus natalensis]) HSP 1 Score: 302.368 bits (773), Expect = 7.440e-99 Identity = 147/269 (54.65%), Postives = 186/269 (69.14%), Query Frame = 0
Query: 55 VAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKER---PTFSKL 320
+ V +NRP KRNAMN FW E E F+ + ++ + RAVV++GAGK+FTSGLDL ++ DL+ G D AR ++ ++ +TR QE F+ IE+ P+PV+AAIHG C+GGG+DLI ACDIRY + F +KEVD+GLAAD+GTLQRLPRV GN+SL+ ELAFT R + E GL+S V P L A LA EI+ KSPVAV GTK NLLYSRDHSV +GLNYM WNM+ LQ++DI K+VQ AM K+ TFSKL
Sbjct: 34 ILHVQLNRPEKRNAMNKAFWSEMVECFNKIAQDADCRAVVISGAGKMFTSGLDLVEMAGDLLQPQGD-------DAARISWSLRGLITRYQETFSVIEKCPKPVIAAIHGGCVGGGVDLITACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPRVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEAMLDAAFALAAEISSKSPVAVQGTKVNLLYSRDHSVAEGLNYMAAWNMSMLQTQDIVKSVQAAMEKKELNSVTFSKL 295
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|602665438|ref|XP_007438305.1| (PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Python bivittatus]) HSP 1 Score: 301.212 bits (770), Expect = 2.027e-98 Identity = 150/284 (52.82%), Postives = 191/284 (67.25%), Query Frame = 0
Query: 40 FETLTIETNRSDAPGVAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKERP---TFSKL 320
+ETL +E R V V +NRP KRNAMN FW E E F+ + ++ E AVVL+GAGKVFTSG+DL ++G + G DVAR+A+ I++ + QE+F +E+ P+P++AA+HGACIGGG+DLI+ACDIRY + F +KEVDIGLAAD+GTLQRLPR+ GN SL+ ELAFT R + E ++ GL+S V L A LA EIA KSPVAV GTK NLLYSRDHSV +GL YM WNM+ LQ+EDI K+ Q AM + P +SKL
Sbjct: 21 YETLKLERAREK---VLHVELNRPEKRNAMNVAFWREMVECFNKIAQDSECHAVVLSGAGKVFTSGIDLMEMGSVFVMAEGD-------DVARKAWNIRKKIRDYQESFTVLEKCPKPIIAAVHGACIGGGMDLISACDIRYCTQDAWFQVKEVDIGLAADVGTLQRLPRIIGNRSLVNELAFTARKVMAPEAESCGLVSRVFRDRETMLQSAFDLATEIASKSPVAVQGTKINLLYSRDHSVPEGLKYMAAWNMSMLQTEDIIKSAQAAMENKTPKQVVYSKL 294
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|1016672441|ref|XP_016061972.1| (PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X1 [Miniopterus natalensis]) HSP 1 Score: 301.597 bits (771), Expect = 3.563e-98 Identity = 147/269 (54.65%), Postives = 186/269 (69.14%), Query Frame = 0
Query: 55 VAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKER---PTFSKL 320
+ V +NRP KRNAMN FW E E F+ + ++ + RAVV++GAGK+FTSGLDL ++ DL+ G D AR ++ ++ +TR QE F+ IE+ P+PV+AAIHG C+GGG+DLI ACDIRY + F +KEVD+GLAAD+GTLQRLPRV GN+SL+ ELAFT R + E GL+S V P L A LA EI+ KSPVAV GTK NLLYSRDHSV +GLNYM WNM+ LQ++DI K+VQ AM K+ TFSKL
Sbjct: 67 ILHVQLNRPEKRNAMNKAFWSEMVECFNKIAQDADCRAVVISGAGKMFTSGLDLVEMAGDLLQPQGD-------DAARISWSLRGLITRYQETFSVIEKCPKPVIAAIHGGCVGGGVDLITACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPRVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEAMLDAAFALAAEISSKSPVAVQGTKVNLLYSRDHSVAEGLNYMAAWNMSMLQTQDIVKSVQAAMEKKELNSVTFSKL 328
BLAST of EWM28568.1 vs. NCBI_GenBank
Match: gi|507971271|ref|XP_004690656.1| (PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Condylura cristata]) HSP 1 Score: 301.212 bits (770), Expect = 6.414e-98 Identity = 147/298 (49.33%), Postives = 200/298 (67.11%), Query Frame = 0
Query: 26 KFTTGASTARREMHFETLTIETNRSDAPGVAFVTINRPRKRNAMNSKFWGECKEVFDTLGEEGEVRAVVLAGAGKVFTSGLDLSDIGIDLMGGSGGGSEGESVDVARQAFKIKRHVTRMQEAFNAIERIPQPVVAAIHGACIGGGIDLIAACDIRYACAETIFSIKEVDIGLAADLGTLQRLPRVTGNESLLRELAFTGRNFSSAEGQALGLLSSVLPSPAETLARATGLAMEIARKSPVAVAGTKANLLYSRDHSVQDGLNYMTTWNMAALQSEDIGKAVQGAMLKERPT---FSKL 320
K T+ A + + ++E+L + + + + V +NRP KRNAMN FW E E F+ + E+ + R VV++G GK+FT+G+DL D+ D++ G DVAR ++ ++ + + QE F+ IE+ P+PV+AA+HG CIGGG+DLI ACDIRY + F +KEVD+GLAAD+GTLQRLPRV GN+SL+ ELAFT R + E GL+S V P L A LA EI+ KSPVAV GTK NL+YSRDHSV +GLN+MT+WNM+ LQ++DI K+VQ AM K+ P FSKL
Sbjct: 41 KATSAAPSEAPDHNYESLRVTSAQKH---ILHVELNRPEKRNAMNRAFWREMVECFNKIAEDADCRVVVISGGGKMFTAGIDLMDMASDILQPRGD-------DVARISWHLRSLIAKYQETFSVIEKCPKPVIAAVHGGCIGGGVDLITACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPRVIGNQSLVNELAFTARKMMADEALECGLVSRVFPDKEVMLNAAFDLAAEISSKSPVAVQGTKINLVYSRDHSVAEGLNFMTSWNMSMLQTDDIVKSVQAAMEKKDPKSVPFSKL 328 The following BLAST results are available for this feature:
BLAST of EWM28568.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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