rna2052, rna2052 (mRNA) Nannochloropsis gaditana

Overview
Namerna2052
Unique Namerna2052
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2622
Alignment locationCM002458.1:780683..781257 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100182g15.949.mrna
Orig protein idgnl|cribi|Naga_100182g15.949
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:780683..781257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100182g15gene1963Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28639.1cds2044Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2052rna2052-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2052 ID=rna2052|Name=rna2052|organism=Nannochloropsis gaditana|type=mRNA|length=2622bp
CCGTCACTGCGCTGCCTTTTTTCCGTCCTCATCCATTTATCTATTCCTTG
ACAGGCAGTACTGACATACTCCGTTTGGAATTTCTGGACGATCGCATGAG
AGCGTGCTACCGTGGTGTTGATGAAGGCGTGGGGATGATGGAGTCAGGTA
CTTTCAGTCGGTACGAATTGGCAAGCAGCGCGTCACCGAATGTCACGGCC
GTCCCACCATTGTCCAATGGAGGGCAGTTCCTGGTGCCAGAAGGGATGTG
GAAGAGTCAGGATGCCCATATCGCGCCAGCGATGGAACGAGCCTTCCCCA
CCACCACATCCCCTGCTAGCAATTTCCATAGCAGTGGGGAGTTGGGGCCT
GGTATACTGCTCTCGGCCCGGTGTGGTCAGGGCCGGCCACCTCAGCATCC
GCCCACCTATTTCTCGACGTCACTCTCGCACTCACACCTGGAGCAGCGGC
CAGACGCGGACATGCTCAAACCTGGGGGCCCAACGTCTGTGGGCACACGG
GCTGGGTTTTCGGCGGAAGCATGTCTCCTGACAGCCGCGGCCAAATGCCG
GGACATGGCCTCGCAAGCGAGCTTTCATCGCTCCACCCTGATCAAGAGCT
CCCCCTCAGCATTTTCTACCGTCAAAGCCTCCAAAAACGTGTCCGCCCGA
TCAAAAAGGGAGGAAGGAAAGGGCGATGAGGGGCTGAGGCGCAGGAGCAG
CAGCAGCAGCCCTCAGACCAGGAAGGGATTGAGCTGGGAGGCAGATGCCG
CCAGAAGAAGTTCTAGCGCGGGTCATGAAAGGGAGCGCACCACCCACGGC
ATGCTTCCCCTGAAAAAACGACGGCATGCCAGTGCCAGCCCCTCAAGCTG
GAGTAGCTCCGAGTCTGGACAGCTGCCTCCCTCTCTCGGGGCCTCCGAGG
GCCGTGCCAGCGCCCCCTGCCACCGTTACACGCCCTTCGCGCCCTCCCCT
ACGCCCTCCCTCCTCGACACGTCCGGCTGGTTGGTCCCCGACTTTCCCTC
CCGCCCGTCCAGCGGACTCCCCACCCTGCCGCCCCTAGGGGACACAGTCA
GCCCGATCTCGCCCCCTCCGGCTGTTGCCTTGCCCCCGCCCACCCCCTCC
CACGCCGGCTCGCCACCCGCCTCACCCTCCTCAGCGGCTCTCGCCGACAA
CGTCCCTTCGGAGAACGACGTTAACTCCTTACCGTCGCTCTTCCGAGAGG
ACAGTCCCCGCAGCTGTTGCAGTTTCGACGTACCGCACGAGGCTGAGAAG
GAGGACGACCTGTTAGCCGCCCGACCGTGTGCCCCGGCCTGCACGACGTC
AAGCCAAAGGGAGGAGGGGCAGGCATTGGGGCTTTCGGATAATGCTGGGC
CTTCTCCGTCGACCTTACGCGCGTCACTGGCGCCGTCTGCCCCCTCCGTT
CCGACCAATACGCCCCAAGAAGAGCGGCCAAAGCGTGCCCGGGGCGCCTC
TGCCTCGGTGACTAGTACCAGGCCCGGCAAGAAGTACGCTGCGCGGAATG
CACCTAAAACGCGGAATATACCTATAACTCGGAGTGTGACGGAAACTCGG
AATGCGCCTGAAGCATGCAAGACGAAGGCGCTGAGGCGAGGGCCACACGA
CGAGGAACCACCTCTGCTAGCAAGAGCGGGTGCGGGGGAGCCAGGTCCTG
GCAGAAGGAGGAAACGGACAGCCCCGGCCGCGGAGGGCTCTGGCAGGTGT
CTGCCAGCAAGGCGAGGGAGCTTTCGTGGTAGAGCGAGGGAGGTTAGGGG
CGCGGGGGACAGTAAGGCGGTCGCGAGTTCTGCCCCTCCCGTCGAAGCCC
CCACAGGCTCCAGGTACTCGATAGCACCGTGTCCGCCAAGGATGTCATTG
CATTCGGGCAGCCATGTGCCCCAAAAAAAGAGAGCACCTGCCTGCTCGAA
ACCTCATATGAAATCCATTCTCTTTCCCCGGCGCATCTCGCATCGTCAAG
GCACTCAGGCCAAGGAGGTGGAAAATTTGGCTATGATGAACCTGGAAGAA
GCCATTGCAGACGACGGCACGAAGTGGAAGGTAGGAGATTTTGGCTTTAC
AAAATACCACATGTATCCCACATGGCCTTTGGTTGTGCGAGCTTTGAGAA
TCGCCCTAGACGGGGAGACCGTTGCGTCCATCGAGTTTTTCGGGGAGTCG
GGGCACGTGGAATGCGCCTTGCATGCATTGGTCAAGTACGAGACTTTGTT
CTCCAAATCTTATCCCCTTGTCATTTCAAGTCTGTATACAGACTCCATCG
TTAGCTCTATTTTGGCTTATCGAAAGCAACACATGCTTTCTGAAACTGCC
TTTTACGGGGTGGTGGGTGTGTCTAAAGAGCATGAGCGTGAGGCCTTTCG
ATTTTTTTTGAGACGTACTTTGTCCGTAAAGGCATCAGAAATGTGGTCGA
AATTAAATGCGCGTTTTCCCGTCGAAATGGTGGCAGATCAGTCACACAAC
ACCCACAAATAAAGTGGTTCAAAGTAGTGAGAAAATATGATAGTTGCACA
AGACCGTACGCGCCGGAGAGGTAATCATATGTAGAATAGAAAATGGGGGT
TGAAAGTTGCGGATTATGTCTGGCGAACGAGATACCTATGAAATCATTGA
ATGTATCAAAAATTGCCTGGCA
back to top

protein sequence of rna2052

>rna2052-protein ID=rna2052-protein|Name=rna2052|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MDLSRSHWSSTCSPRGKRAFCSVQNLCGAWEWFRRKAGLAFRARIRGVCK
EEGATATRSWLGEMSIAHVAFVLFTSQNFVSWAGYTLLLCGKRVKAKGHE
TRKRVQRKR
back to top

mRNA from alignment at CM002458.1:780683..781257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2052 ID=rna2052|Name=rna2052|organism=Nannochloropsis gaditana|type=mRNA|length=575bp|location=Sequence derived from alignment at CM002458.1:780683..781257- (Nannochloropsis gaditana)
TATATATATATATATATATATATATATGCCGCAGGGTGGAGGGTGTCGAG
GCGGGGCAAGTACCGACTATGTCGCCCCATCGGGCCTCTTTTCCCAGGAA
GCGGCGTCGGGGGGCTTGTAAAACACTCCAAAATCCCTAGAAGAGATGGA
TTTATCCCGGTCCCATTGGAGTAGCACATGCAGCCCACGGGGGAAGCGGG
CCTTTTGTAGTGTACAAAATTTGTGTGGTGCCTGGGAATGGTTTAGAAGG
AAGGCTGGTCTGGCGTTTAGAGCACGAATCAGGGGTGTGTGCAAAGAGGA
AGGTGCCACGGCAACTCGGTCATGGCTAGGGGAAATGTCGATCGCCCACG
TCGCCTTTGTATTGTTTACGAGCCAGAACTTTGTGTCATGGGCGGGGTAT
ACACTATTACTGTGTGGCAAGAGAGTGAAGGCGAAGGGTCACGAGACGCG
GAAACGTGTGCAAAGGAAGAGATGAGAGGGTAATCGGGAGCGACGCGCTG
TTAGCTCGTTTCGTTTGTTCACACATACTTTTCGTGCATCGTCCAGACGT
GAGCCTGGGGTCTGCAGGCAGCCCA
back to top

Coding sequence (CDS) from alignment at CM002458.1:780683..781257-

>rna2052 ID=rna2052|Name=rna2052|organism=Nannochloropsis gaditana|type=CDS|length=330bp|location=Sequence derived from alignment at CM002458.1:780683..781257- (Nannochloropsis gaditana)
ATGGATTTATCCCGGTCCCATTGGAGTAGCACATGCAGCCCACGGGGGAA
GCGGGCCTTTTGTAGTGTACAAAATTTGTGTGGTGCCTGGGAATGGTTTA
GAAGGAAGGCTGGTCTGGCGTTTAGAGCACGAATCAGGGGTGTGTGCAAA
GAGGAAGGTGCCACGGCAACTCGGTCATGGCTAGGGGAAATGTCGATCGC
CCACGTCGCCTTTGTATTGTTTACGAGCCAGAACTTTGTGTCATGGGCGG
GGTATACACTATTACTGTGTGGCAAGAGAGTGAAGGCGAAGGGTCACGAG
ACGCGGAAACGTGTGCAAAGGAAGAGATGA
back to top
Synonyms
Publications