rna2047, rna2047 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2047
Unique Name	rna2047
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	675
Alignment location	CM002458.1:766335..768514 -

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Properties


Property Name	Value
Product	auxin efflux carrier
Orig transcript id	gnl\|cribi\|Naga_100182g10.946.mrna
Orig protein id	gnl\|cribi\|Naga_100182g10.946
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:766335..768514 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100182g10	gene1958	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2047	rna2047-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28636.1	cds2039	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:766335..768514-
coding sequence from alignment at CM002458.1:766335..768514-

mRNA sequence

>rna2047 ID=rna2047|Name=rna2047|organism=Nannochloropsis gaditana|type=mRNA|length=675bp
ATGGCGGAGCTAAATGTTGCGGCCTCCTCTTCGCTCCCCGTCAAGGAGAA
AGCCCTTCAGCTGTTGCGAGCAGGCCCCCTACCAAAGCTCATTGTCTTAG
ATTTGGATTACACCCTCTGGCAGGCTTACGTCGATTCAACAAGCGGTCCA
CCTTTTGTCTACCACAAACAGGAGCAAGCAGTCCTTGATAAACGAAAATG
GGAGATCGAAGCGTTTGAACATACTCGACCATTGCTACAAGCACTTATGG
AGGCAAATACGCAGGTGGCCTTTGCATCTCGCACAGAAGAGCCAGCTTGG
GCAAATGAAGTTATAAGCATATTTGAAATTGACGAACAAGGACGATGCCT
AAGCGACTACGCCCAGGCCTGGGAAATATACCCCACTTCTAAAGAGAAGC
ATTTTCACGCTCTGGCACGAAAATTGAATGTTAATTTCAGCGAAATGTTA
TTCTTTGATGATGAAAAACGGAATATCCACGAAGTATCTCAGTTAGGCGT
TATATCTGTCCATTGCAAGGATGGCATTTCCCTTAGCACTTTCGAGGAAG
GACTTCTAGAATTTCGGTGTGGGAACTCCATTGAGCATTGTCTTGTAGAA
TTTGTCATGTACTACTTTTCATGGTATCTATCCAACTATGTGCATATTTG
TCATCAAGTGCCTTTTGACTGTTAG

protein sequence of rna2047

>rna2047-protein ID=rna2047-protein|Name=rna2047|organism=Nannochloropsis gaditana|type=polypeptide|length=657bp
MFELPTRDLIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGR
LVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTT
FFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDLRG
VEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEGEDEVMKSTY
FQDADQERALECRPHSASMNVPGAAARLESEGSDQQVPPALAAGPSSALS
RRRGSVATPSRTDKYDSGIRTSASELGPGTPRLRRLQSHSQILDQEDINS
ILSRYPVESRPQMETEQSGLGLLGSSLSLVGSMSSPYLPSLSSSPSLFRL
RGSRTDTTHPQLHPEESAERERLMGRRRSGSIGFGSTHQAGNSSVSAGKG
NGAIPSEGLVPPRISVKGLEPSRSHISSQSLSSTPPLPVHSPEPSILVVP
PPTCYSRILDVWVGFLLVISRLAANPSIRAALTAFFLGLFPPIKALFVPT
VDRPDPPLGAFLGAMQILGQAQVPCSMLMLSGSGTIRYLNDKAAQNNATA
SFAFKPRVIFCIILGRILLFPLIGLGAWWGGYTLGLFEGTPVLSLVALLD
AAVPSAQNVVMLILVHGKSEHGHALAYVILWQYALCIPVLILNVTIYLSI
IRSVYLS

mRNA from alignment at CM002458.1:766335..768514-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2047 ID=rna2047|Name=rna2047|organism=Nannochloropsis gaditana|type=mRNA|length=2180bp|location=Sequence derived from alignment at CM002458.1:766335..768514- (Nannochloropsis gaditana)
ATGTTTGAACTGCCGACGAGGGACCTCATCGAAGATGCTTTGTCGGCCTC
TGCCAACGCCACGTGCAAAATTGTCTTCCTAGTTTTGATCGGAGTAGTGG
CCACTGCACAAGGTACGACAAGAGAGGTATAGCGCAACGGGAAGGAGGAT
TGGTGTGTAACTAACTCGCGTATTTTCTCCAAAGAATGTCGACCCTTCAA
CTGATGGTTGCCGTCATACAACTGTTGAGACGACAAGCCTGTTTGTTGAC
AAGAAATACGTGCACAATTGACTTCACTTCCGGCAACTTATTTTTTGTAC
CTCTATCCTATTCTGCAGGAGTTTTTAACGATCAAGGGGTTTCCGATTTG
GGCAGACTCGTGTATCACGTGACCCTCCCCGCCCTCCTTTTCGTGAATAT
CATTAGCGAGGTGACCGTCGCACGTTTAATGGTACTTTGGAAACTTCCTG
TGCTAGCTCTTGTACACGTCTGCTCAGGCTTCATCCTTGCTACGTGCCTG
ACAACTTTCTTTCGCATCCGCGGCATCGGGAAGAAGGCTGTGACCCTGTG
TCTCATGTTCGGAAACGTGGGCTCCCTGTCGATCGCCATGATCGACACGC
TCTGTGCGGACGAGCCTTTGGCGTCAGGTGTTGGCCCGGACTGTGACTTG
CGGGGCGTCGAATACATCTCTTTCTACCTGATTACCCAGACCATCCTCAT
GTTCACGTGGGCGGAGGAGATTGTCAAGGACCAGAAAGGGGATGAGGAGG
AGGAGGAGGAGGCGGAGGCACTTGAGGGGGAAGATGAGGTCATGAAGAGC
ACTTATTTCCAAGACGCAGATCAAGAGCGCGCGCTGGAGTGCCGGCCTCA
CTCAGCATCGATGAACGTCCCTGGGGCGGCGGCACGTCTAGAGAGTGAGG
GCTCGGACCAACAAGTGCCTCCCGCGCTAGCAGCGGGGCCTTCCTCGGCG
CTCTCTCGAAGGAGGGGCTCTGTCGCTACCCCGTCACGCACGGACAAGTA
CGACTCCGGAATCCGGACGAGCGCATCGGAGCTGGGCCCGGGAACACCGC
GCCTGCGGCGGTTGCAATCTCATTCGCAGATCCTCGACCAGGAAGATATC
AACTCAATCCTTAGTCGGTATCCAGTCGAGTCCCGGCCTCAGATGGAGAC
AGAGCAGAGCGGTTTGGGCTTGCTGGGGAGTAGTTTGAGTCTGGTGGGGA
GCATGAGCAGCCCGTACTTGCCCTCTTTGTCCTCGTCCCCTTCCCTATTT
CGCCTGCGGGGCTCGCGGACGGACACGACTCACCCGCAGCTGCATCCGGA
GGAGAGCGCGGAGAGGGAGCGGCTCATGGGTCGACGCCGGAGTGGAAGCA
TTGGCTTCGGATCCACCCACCAGGCAGGCAACAGCTCTGTGTCGGCTGGT
AAAGGCAACGGAGCCATCCCTAGCGAGGGCCTCGTGCCCCCGCGTATCTC
CGTGAAGGGCCTGGAGCCCTCCCGCTCTCATATCTCCTCCCAGTCCCTCT
CCTCCACGCCCCCGCTCCCCGTGCATTCTCCTGAACCTAGCATCCTTGTC
GTGCCCCCTCCGACCTGTTACTCGCGCATTCTAGACGTCTGGGTCGGCTT
CCTCCTCGTTATCTCGCGCCTTGCGGCCAATCCCTCGATACGTGCCGCCC
TGACCGCCTTCTTCCTCGGGCTCTTCCCGCCCATCAAAGCTCTCTTCGTC
CCCACTGTCGATAGGCCCGATCCTCCCTTGGGCGCCTTCTTGGGGGCCAT
GCAGATTCTGGGCCAGGCACAAGTTCCTTGCTCGATGCTGATGCTATCAG
GCTCCGGAACCATCCGGTATCTGAACGACAAGGCCGCCCAAAACAACGCA
ACCGCGTCTTTCGCGTTCAAGCCTCGAGTGATTTTCTGCATAATCTTAGG
TCGGATTCTGCTCTTTCCACTCATTGGGCTGGGAGCCTGGTGGGGCGGGT
ACACGCTGGGGCTTTTCGAAGGAACTCCTGTCCTCTCCTTGGTCGCGCTA
TTGGATGCTGCTGTCCCTTCGGCCCAGAATGTGGTCATGTTGATCTTGGT
GCACGGCAAGTCAGAACACGGTCATGCGCTTGCCTATGTCATCCTTTGGC
AATATGCTCTCTGCATACCGGTGCTTATCTTGAACGTAACGATTTATCTC
TCCATTATCCGGTCTGTCTATCTATCTTGA

Coding sequence (CDS) from alignment at CM002458.1:766335..768514-

>rna2047 ID=rna2047|Name=rna2047|organism=Nannochloropsis gaditana|type=CDS|length=3948bp|location=Sequence derived from alignment at CM002458.1:766335..768514- (Nannochloropsis gaditana)
GAGTTTTTAACGATCAAGGGGTTTCCGATTTGGGCAGACTCGTGTATCAC
GTGACCCTCCCCGCCCTCCTTTTCGTGAATATCATTAGCGAGGTGACCGT
CGCACGTTTAATGGTACTTTGGAAACTTCCTGTGCTAGCTCTTGTACACG
TCTGCTCAGGCTTCATCCTTGCTACGTGCCTGACAACTTTCTTTCGCATC
CGCGGCATCGGGAAGAAGGCTGTGACCCTGTGTCTCATGTTCGGAAACGT
GGGCTCCCTGTCGATCGCCATGATCGACACGCTCTGTGCGGACGAGCCTT
TGGCGTCAGGTGTTGGCCCGGACTGTGACTTGCGGGGCGTCGAATACATC
TCTTTCTACCTGATTACCCAGACCATCCTCATGTTCACGTGGGCGGAGGA
GATTGTCAAGGACCAGAAAGGGGATGAGGAGGAGGAGGAGGAGGCGGAGG
CACTTGAGGGGGAAGATGAGGTCATGAAGAGCACTTATTTCCAAGACGCA
GATCAAGAGCGCGCGCTGGAGTGCCGGCCTCACTCAGCATCGATGAACGT
CCCTGGGGCGGCGGCACGTCTAGAGAGTGAGGGCTCGGACCAACAAGTGC
CTCCCGCGCTAGCAGCGGGGCCTTCCTCGGCGCTCTCTCGAAGGAGGGGC
TCTGTCGCTACCCCGTCACGCACGGACAAGTACGACTCCGGAATCCGGAC
GAGCGCATCGGAGCTGGGCCCGGGAACACCGCGCCTGCGGCGGTTGCAAT
CTCATTCGCAGATCCTCGACCAGGAAGATATCAACTCAATCCTTAGTCGG
TATCCAGTCGAGTCCCGGCCTCAGATGGAGACAGAGCAGAGCGGTTTGGG
CTTGCTGGGGAGTAGTTTGAGTCTGGTGGGGAGCATGAGCAGCCCGTACT
TGCCCTCTTTGTCCTCGTCCCCTTCCCTATTTCGCCTGCGGGGCTCGCGG
ACGGACACGACTCACCCGCAGCTGCATCCGGAGGAGAGCGCGGAGAGGGA
GCGGCTCATGGGTCGACGCCGGAGTGGAAGCATTGGCTTCGGATCCACCC
ACCAGGCAGGCAACAGCTCTGTGTCGGCTGGTAAAGGCAACGGAGCCATC
CCTAGCGAGGGCCTCGTGCCCCCGCGTATCTCCGTGAAGGGCCTGGAGCC
CTCCCGCTCTCATATCTCCTCCCAGTCCCTCTCCTCCACGCCCCCGCTCC
CCGTGCATTCTCCTGAACCTAGCATCCTTGTCGTGCCCCCTCCGACCTGT
TACTCGCGCATTCTAGACGTCTGGGTCGGCTTCCTCCTCGTTATCTCGCG
CCTTGCGGCCAATCCCTCGATACGTGCCGCCCTGACCGCCTTCTTCCTCG
GGCTCTTCCCGCCCATCAAAGCTCTCTTCGTCCCCACTGTCGATAGGCCC
GATCCTCCCTTGGGCGCCTTCTTGGGGGCCATGCAGATTCTGGGCCAGGC
ACAAGTTCCTTGCTCGATGCTGATGCTATCAGGCTCCGGAACCATCCGGT
ATCTGAACGACAAGGCCGCCCAAAACAACGCAACCGCGTCTTTCGCGTTC
AAGCCTCGAGTGATTTTCTGCATAATCTTAGGTCGGATTCTGCTCTTTCC
ACTCATTGGGCTGGGAGCCTGGTGGGGCGGGTACACGCTGGGGCTTTTCG
AAGGAACTCCTGTCCTCTCCTTGGTCGCGCTATTGGATGCTGCTGTCCCT
TCGGCCCAGAATGTGGTCATGTTGATCTTGGTGCACGGCAAGTCAGAACA
CGGTCATGCGCTTGCCTATGTCATCCTTTGGCAATATGCTCTCTGCATAC
CGGTGCTTATCTTGAACGTAACGATTTATCTCTCCATTATCCGGTCTGTC
TATCTATCTTGAATGTTTGAACTGCCGACGAGGGACCTCATCGAAGATGC
TTTGTCGGCCTCTGCCAACGCCACGTGCAAAATTGTCTTCCTAGTTTTGA
TCGGAGTAGTGGCCACTGCACAAGGAGTTTTTAACGATCAAGGGGTTTCC
GATTTGGGCAGACTCGTGTATCACGTGACCCTCCCCGCCCTCCTTTTCGT
GAATATCATTAGCGAGGTGACCGTCGCACGTTTAATGGTACTTTGGAAAC
TTCCTGTGCTAGCTCTTGTACACGTCTGCTCAGGCTTCATCCTTGCTACG
TGCCTGACAACTTTCTTTCGCATCCGCGGCATCGGGAAGAAGGCTGTGAC
CCTGTGTCTCATGTTCGGAAACGTGGGCTCCCTGTCGATCGCCATGATCG
ACACGCTCTGTGCGGACGAGCCTTTGGCGTCAGGTGTTGGCCCGGACTGT
GACTTGCGGGGCGTCGAATACATCTCTTTCTACCTGATTACCCAGACCAT
CCTCATGTTCACGTGGGCGGAGGAGATTGTCAAGGACCAGAAAGGGGATG
AGGAGGAGGAGGAGGAGGCGGAGGCACTTGAGGGGGAAGATGAGGTCATG
AAGAGCACTTATTTCCAAGACGCAGATCAAGAGCGCGCGCTGGAGTGCCG
GCCTCACTCAGCATCGATGAACGTCCCTGGGGCGGCGGCACGTCTAGAGA
GTGAGGGCTCGGACCAACAAGTGCCTCCCGCGCTAGCAGCGGGGCCTTCC
TCGGCGCTCTCTCGAAGGAGGGGCTCTGTCGCTACCCCGTCACGCACGGA
CAAGTACGACTCCGGAATCCGGACGAGCGCATCGGAGCTGGGCCCGGGAA
CACCGCGCCTGCGGCGGTTGCAATCTCATTCGCAGATCCTCGACCAGGAA
GATATCAACTCAATCCTTAGTCGGTATCCAGTCGAGTCCCGGCCTCAGAT
GGAGACAGAGCAGAGCGGTTTGGGCTTGCTGGGGAGTAGTTTGAGTCTGG
TGGGGAGCATGAGCAGCCCGTACTTGCCCTCTTTGTCCTCGTCCCCTTCC
CTATTTCGCCTGCGGGGCTCGCGGACGGACACGACTCACCCGCAGCTGCA
TCCGGAGGAGAGCGCGGAGAGGGAGCGGCTCATGGGTCGACGCCGGAGTG
GAAGCATTGGCTTCGGATCCACCCACCAGGCAGGCAACAGCTCTGTGTCG
GCTGGTAAAGGCAACGGAGCCATCCCTAGCGAGGGCCTCGTGCCCCCGCG
TATCTCCGTGAAGGGCCTGGAGCCCTCCCGCTCTCATATCTCCTCCCAGT
CCCTCTCCTCCACGCCCCCGCTCCCCGTGCATTCTCCTGAACCTAGCATC
CTTGTCGTGCCCCCTCCGACCTGTTACTCGCGCATTCTAGACGTCTGGGT
CGGCTTCCTCCTCGTTATCTCGCGCCTTGCGGCCAATCCCTCGATACGTG
CCGCCCTGACCGCCTTCTTCCTCGGGCTCTTCCCGCCCATCAAAGCTCTC
TTCGTCCCCACTGTCGATAGGCCCGATCCTCCCTTGGGCGCCTTCTTGGG
GGCCATGCAGATTCTGGGCCAGGCACAAGTTCCTTGCTCGATGCTGATGC
TATCAGGCTCCGGAACCATCCGGTATCTGAACGACAAGGCCGCCCAAAAC
AACGCAACCGCGTCTTTCGCGTTCAAGCCTCGAGTGATTTTCTGCATAAT
CTTAGGTCGGATTCTGCTCTTTCCACTCATTGGGCTGGGAGCCTGGTGGG
GCGGGTACACGCTGGGGCTTTTCGAAGGAACTCCTGTCCTCTCCTTGGTC
GCGCTATTGGATGCTGCTGTCCCTTCGGCCCAGAATGTGGTCATGTTGAT
CTTGGTGCACGGCAAGTCAGAACACGGTCATGCGCTTGCCTATGTCATCC
TTTGGCAATATGCTCTCTGCATACCGGTGCTTATCTTGAACGTAACGATT
TATCTCTCCATTATCCGGTCTGTCTATCTATCTTGAATGTTTGAACTGCC
GACGAGGGACCTCATCGAAGATGCTTTGTCGGCCTCTGCCAACGCCACGT
GCAAAATTGTCTTCCTAGTTTTGATCGGAGTAGTGGCCACTGCACAAG

Synonyms

Publications