EWM28636.1, cds2039 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|585111055|gb|EWM28636.1| (auxin efflux carrier [Nannochloropsis gaditana]) HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0 Identity = 657/657 (100.00%), Postives = 657/657 (100.00%), Query Frame = 0
Query: 1 MFELPTRDLIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEGEDEVMKSTYFQDADQERALECRPHSASMNVPGAAARLESEGSDQQVPPALAAGPSSALSRRRGSVATPSRTDKYDSGIRTSASELGPGTPRLRRLQSHSQILDQEDINSILSRYPVESRPQMETEQSGLGLLGSSLSLVGSMSSPYLPSLSSSPSLFRLRGSRTDTTHPQLHPEESAERERLMGRRRSGSIGFGSTHQAGNSSVSAGKGNGAIPSEGLVPPRISVKGLEPSRSHISSQSLSSTPPLPVHSPEPSILVVPPPTCYSRILDVWVGFLLVISRLAANPSIRAALTAFFLGLFPPIKALFVPTVDRPDPPLGAFLGAMQILGQAQVPCSMLMLSGSGTIRYLNDKAAQNNATASFAFKPRVIFCIILGRILLFPLIGLGAWWGGYTLGLFEGTPVLSLVALLDAAVPSAQNVVMLILVHGKSEHGHALAYVILWQYALCIPVLILNVTIYLSIIRSVYLS 657
MFELPTRDLIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEGEDEVMKSTYFQDADQERALECRPHSASMNVPGAAARLESEGSDQQVPPALAAGPSSALSRRRGSVATPSRTDKYDSGIRTSASELGPGTPRLRRLQSHSQILDQEDINSILSRYPVESRPQMETEQSGLGLLGSSLSLVGSMSSPYLPSLSSSPSLFRLRGSRTDTTHPQLHPEESAERERLMGRRRSGSIGFGSTHQAGNSSVSAGKGNGAIPSEGLVPPRISVKGLEPSRSHISSQSLSSTPPLPVHSPEPSILVVPPPTCYSRILDVWVGFLLVISRLAANPSIRAALTAFFLGLFPPIKALFVPTVDRPDPPLGAFLGAMQILGQAQVPCSMLMLSGSGTIRYLNDKAAQNNATASFAFKPRVIFCIILGRILLFPLIGLGAWWGGYTLGLFEGTPVLSLVALLDAAVPSAQNVVMLILVHGKSEHGHALAYVILWQYALCIPVLILNVTIYLSIIRSVYLS
Sbjct: 1 MFELPTRDLIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEGEDEVMKSTYFQDADQERALECRPHSASMNVPGAAARLESEGSDQQVPPALAAGPSSALSRRRGSVATPSRTDKYDSGIRTSASELGPGTPRLRRLQSHSQILDQEDINSILSRYPVESRPQMETEQSGLGLLGSSLSLVGSMSSPYLPSLSSSPSLFRLRGSRTDTTHPQLHPEESAERERLMGRRRSGSIGFGSTHQAGNSSVSAGKGNGAIPSEGLVPPRISVKGLEPSRSHISSQSLSSTPPLPVHSPEPSILVVPPPTCYSRILDVWVGFLLVISRLAANPSIRAALTAFFLGLFPPIKALFVPTVDRPDPPLGAFLGAMQILGQAQVPCSMLMLSGSGTIRYLNDKAAQNNATASFAFKPRVIFCIILGRILLFPLIGLGAWWGGYTLGLFEGTPVLSLVALLDAAVPSAQNVVMLILVHGKSEHGHALAYVILWQYALCIPVLILNVTIYLSIIRSVYLS 657
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|470300756|ref|XP_004346997.1| (hypothetical protein CAOG_05312 [Capsaspora owczarzaki ATCC 30864] >gi|765554092|gb|KJE94713.1| hypothetical protein CAOG_005312 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 84.3445 bits (207), Expect = 2.134e-13 Identity = 51/187 (27.27%), Postives = 89/187 (47.59%), Query Frame = 0
Query: 8 DLIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDL------RGVEYISFYLITQTILMFTWAEEIVK---DQKGDEEEEEE 185
D I + + + AT K++ L +GV A G+ N + + L +LV + +PAL FV+I +T + LW LP+ L+++C G + R + V +C FGN ++ +A++ +L +A D D RG YI Y + TIL +++A +++ + DE E +
Sbjct: 6 DEISNVILPAIKATAKVILLAAVGVAAKRLGILNSETSTRLSKLVLNFAVPALTFVSIAHAITFDNIKELWPLPLFGLLYICLGMAFGWIICRICRFPKAIRNLVMVCCAFGNSQTIPLALVSSLA--HSVAQLKQSDTDTPAAIIARGTSYIMLYTLIGTILRWSFAYKLLNPSPQTRADELERQH 190
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1183482933|gb|ORZ06714.1| (auxin efflux carrier [Absidia repens]) HSP 1 Score: 78.5666 bits (192), Expect = 9.520e-12 Identity = 51/183 (27.87%), Postives = 88/183 (48.09%), Query Frame = 0
Query: 9 LIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEP------LASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEE 185
++E +SA A +++ +VL GV+ T G F+ L RL P LLF NI S +++ +L+ LW +PV + ++ A + RI+G ++ V C MF N SL IA+I +L E A D RGV Y FY + I+ +++ +++ + +++ +
Sbjct: 1 MLELVISA-LQAILQVITIVLFGVILTKTGHFDSSKQKWLSRLNLTFFTPCLLFSNIASTISLEKLVTLWPIPVFFCAFILVSWLAALWMLRLLRIQGDHRQFVIACTMFCNTNSLPIAIITSLAFSEAGHLLYWCADDTQQDVAARGVAYTIFYAMFCNIVRWSYGYHLLQQPQTAHDDDRD 182
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1043306159|gb|OBZ90791.1| (putative transporter C5D6.04 [Choanephora cucurbitarum]) HSP 1 Score: 78.1814 bits (191), Expect = 1.096e-11 Identity = 50/179 (27.93%), Postives = 88/179 (49.16%), Query Frame = 0
Query: 23 KIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEP------LASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEG-EDE 194
+++ +V IG V + G ++ L +L P LLF NI S ++V RL+ W +PV ++ V + L+ + FR+ K+ V+ C+MF N SL +A+I +L E + RG+ Y+ F+ + IL +++ +++ QK +EE+ E L +DE
Sbjct: 25 QVMVIVFIGAVLSKLGYMDNDKQKWLSKLNLTFFTPCLLFSNIASVISVERLIDFWSIPVFYVLFVSISWTLSYIACSLFRVENHHKRFVSACVMFSNANSLPVAIIASLAVSEAGKKLYWDSDDSQSSISARGISYVLFFGLFGNILRWSYGYNLLQ-QKNEEEDNSSVETLRNSQDE 202
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|661186162|emb|CDH51524.1| (auxin family transmembrane transporter [Lichtheimia corymbifera JMRC:FSU:9682]) HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-10 Identity = 47/173 (27.17%), Postives = 79/173 (45.66%), Query Frame = 0
Query: 16 ASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDL------RGVEYISFYLITQTILMFTWAEEIVKDQKGDEEE 182
++ A +++ +VL G T G F + L +L P L+F NI S +++ L+ W +P V+ F + + F + ++ V C MFGN SL IA+I +L E + + D RGV YI F+ I +L +++ +++ DEEE
Sbjct: 7 SAIQAVLQVMVVVLFGFCLTKLGFFTNDKQKWLSKLNLVFFTPCLMFSNIASTISMEHLLAFWPIPAFFAVYATLTFTMGNLMGHLFGLNAPYRRFVLACAMFGNTNSLPIAIITSLAVSEAGKTLFWNEDDTQESVAARGVSYILFFAIFGNLLRWSYGYSLLQKLPEDEEE 179
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1183328276|gb|ORX58026.1| (auxin efflux carrier [Hesseltinella vesiculosa]) HSP 1 Score: 74.7146 bits (182), Expect = 2.039e-10 Identity = 44/162 (27.16%), Postives = 78/162 (48.15%), Query Frame = 0
Query: 27 LVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEP------LASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEE 182
+V IGV T G N+Q L +L P LLF NI S +++ +L+ W +PV ++ + + ++ + F ++G+ ++ VT+C MF N SL IA+I +L E A RG+ Y FY + I +++ +++ + D +
Sbjct: 1 MVSIGVGITKAGYVNEQQQKWLSKLNMTFFTPCLLFTNIASVISIEKLLAFWPIPVFHVLFLFLSWAVSLVTSPLFGVQGVYRRFVTVCTMFCNTNSLPIAIISSLAFSEAGRLLFWHADDTQQTVAARGLAYTLFYAMFCNITRWSYGYHLLQPPRDDNDS 162
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|545707130|ref|XP_005705880.1| (auxin efflux carrier [Galdieria sulphuraria] >gi|452822340|gb|EME29360.1| auxin efflux carrier [Galdieria sulphuraria]) HSP 1 Score: 73.9442 bits (180), Expect = 2.828e-10 Identity = 49/183 (26.78%), Postives = 85/183 (46.45%), Query Frame = 0
Query: 19 NATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILA--TCLTT----FFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEGEDEV 195
N TCK+V L +G +G + +L +++ + LP LLF +I+ + L+ LW +PV+A++ + G++L C T FFR +A + GN L + ++DTLC P +G C YIS +L+ + + +T + +G E+ GE+E+
Sbjct: 15 NGTCKVVLLTAVGFYLAHKGQLRKEMSKNLSTIIFEILLPCLLFSSILRTLVNVGLLALWYIPVIAVLFLLLGWVLGQLVCKVTKPPPFFR------RACIVACALGNSNQLPVLIMDTLCGFYPSFQQLGSTCRDSATGYISLFLLVFSTVSWT---GFYRYLQGSTREDSVMN--NGENEL 186
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1183498828|gb|ORZ22474.1| (auxin efflux carrier [Absidia repens]) HSP 1 Score: 73.559 bits (179), Expect = 5.020e-10 Identity = 47/178 (26.40%), Postives = 85/178 (47.75%), Query Frame = 0
Query: 24 IVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEP-----LASGVGPDC-DLRGVEYISFYLITQTILMFTWAEEIVKDQKGDE--EEEEEAEALEGED 193
+ +V +G V +G FN L +L P LLF N+ S ++ +L+ W +PV V S +++ T + ++ V C+MF N SL +A I +L E S P+ RG+ Y F+ I +L +++ ++++ ++GDE +E+EE + + +D
Sbjct: 66 VTHVVTLGFVFAKKGYFNMDKQKWLSKLNLMYFTPCLLFSNVASIISFEKLIAFWPIPVFYYVFSISFYVMTQLSTRMLGLNPGYRRFVLACVMFQNTNSLPLATISSLAVSEASKILFWNSDDTPEAVAARGISYTLFFAIFGNLLRWSYGYQLLQKREGDEGYKEDEEHQTQQQQD 243
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|729697641|emb|CEJ04949.1| (Putative Dynein light chain 1, cytoplasmic [Rhizopus microsporus]) HSP 1 Score: 72.7886 bits (177), Expect = 5.455e-10 Identity = 48/185 (25.95%), Postives = 87/185 (47.03%), Query Frame = 0
Query: 16 ASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIG---KKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDL------RGVEYISFYLITQTILMFTWAEEIVKDQKGDE----EEEEEAE 187
AS A +++ +V G + G FN L +L P LLF NI S ++ +L+ W +PV L+ + T F R+ G+ ++ VT C+MF N S+ IA+I +L + + + D D RG+ Y F+ I ++ +++ ++++ + D+ E+EE +
Sbjct: 7 ASIQAILQVMVVVFFGALLARMGYFNMDKQRWLSKLNMVFFTPCLLFSNIASIISFQKLLAFWPIPVFYLIFTVMNY---TSSNVFSRLVGLSPAYRRFVTACVMFSNSNSVPIAIISSLAVSDAIKTLAWTDDDTSESVAARGISYTLFFAIFGNLIRWSYGYQLLQKRNEDDTSTIHEDEEVQ 188
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1178064518|gb|ORE18966.1| (auxin efflux carrier [Rhizopus microsporus]) HSP 1 Score: 72.7886 bits (177), Expect = 6.516e-10 Identity = 48/185 (25.95%), Postives = 88/185 (47.57%), Query Frame = 0
Query: 16 ASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIG---KKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDL------RGVEYISFYLITQTILMFTWAEEIVKDQKGDE----EEEEEAE 187
AS A +++ +V +G + G FN L +L P LLF NI S ++ +L+ W +PV L+ + T F R+ G+ ++ VT C+MF N S+ IA+I +L + + + D D RG+ Y F+ I ++ +++ ++++ + D+ E+EE +
Sbjct: 7 ASIQAILQVMVVVFLGALLARMGYFNMDKQRWLSKLNMVFFTPCLLFSNIASIISFQKLLAFWPIPVFYLIFALMNY---TSSNVFSRLVGLSPAYRRFVTACVMFSNSNSVPIAIISSLAVSDAVKTLAWTDDDTSESIAARGISYTLFFAIFGNLIRWSYGYQLLQKRNEDDTSTIHEDEEVQ 188 The following BLAST results are available for this feature:
BLAST of EWM28636.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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