EWM28636.1, cds2039 (CDS) Nannochloropsis gaditana

Overview
NameEWM28636.1
Unique Namecds2039
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:768403..768514 -
Alignment locationCM002458.1:766335..768196 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28636.1
Productauxin efflux carrier
Orig transcript idgnl|cribi|Naga_100182g10.946.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:768403..768514 -
CM002458.1supercontigCM002458.1:766335..768196 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004776Auxin_eff
Homology
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|585111055|gb|EWM28636.1| (auxin efflux carrier [Nannochloropsis gaditana])

HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0
Identity = 657/657 (100.00%), Postives = 657/657 (100.00%), Query Frame = 0
Query:    1 MFELPTRDLIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEGEDEVMKSTYFQDADQERALECRPHSASMNVPGAAARLESEGSDQQVPPALAAGPSSALSRRRGSVATPSRTDKYDSGIRTSASELGPGTPRLRRLQSHSQILDQEDINSILSRYPVESRPQMETEQSGLGLLGSSLSLVGSMSSPYLPSLSSSPSLFRLRGSRTDTTHPQLHPEESAERERLMGRRRSGSIGFGSTHQAGNSSVSAGKGNGAIPSEGLVPPRISVKGLEPSRSHISSQSLSSTPPLPVHSPEPSILVVPPPTCYSRILDVWVGFLLVISRLAANPSIRAALTAFFLGLFPPIKALFVPTVDRPDPPLGAFLGAMQILGQAQVPCSMLMLSGSGTIRYLNDKAAQNNATASFAFKPRVIFCIILGRILLFPLIGLGAWWGGYTLGLFEGTPVLSLVALLDAAVPSAQNVVMLILVHGKSEHGHALAYVILWQYALCIPVLILNVTIYLSIIRSVYLS 657
            MFELPTRDLIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEGEDEVMKSTYFQDADQERALECRPHSASMNVPGAAARLESEGSDQQVPPALAAGPSSALSRRRGSVATPSRTDKYDSGIRTSASELGPGTPRLRRLQSHSQILDQEDINSILSRYPVESRPQMETEQSGLGLLGSSLSLVGSMSSPYLPSLSSSPSLFRLRGSRTDTTHPQLHPEESAERERLMGRRRSGSIGFGSTHQAGNSSVSAGKGNGAIPSEGLVPPRISVKGLEPSRSHISSQSLSSTPPLPVHSPEPSILVVPPPTCYSRILDVWVGFLLVISRLAANPSIRAALTAFFLGLFPPIKALFVPTVDRPDPPLGAFLGAMQILGQAQVPCSMLMLSGSGTIRYLNDKAAQNNATASFAFKPRVIFCIILGRILLFPLIGLGAWWGGYTLGLFEGTPVLSLVALLDAAVPSAQNVVMLILVHGKSEHGHALAYVILWQYALCIPVLILNVTIYLSIIRSVYLS
Sbjct:    1 MFELPTRDLIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEGEDEVMKSTYFQDADQERALECRPHSASMNVPGAAARLESEGSDQQVPPALAAGPSSALSRRRGSVATPSRTDKYDSGIRTSASELGPGTPRLRRLQSHSQILDQEDINSILSRYPVESRPQMETEQSGLGLLGSSLSLVGSMSSPYLPSLSSSPSLFRLRGSRTDTTHPQLHPEESAERERLMGRRRSGSIGFGSTHQAGNSSVSAGKGNGAIPSEGLVPPRISVKGLEPSRSHISSQSLSSTPPLPVHSPEPSILVVPPPTCYSRILDVWVGFLLVISRLAANPSIRAALTAFFLGLFPPIKALFVPTVDRPDPPLGAFLGAMQILGQAQVPCSMLMLSGSGTIRYLNDKAAQNNATASFAFKPRVIFCIILGRILLFPLIGLGAWWGGYTLGLFEGTPVLSLVALLDAAVPSAQNVVMLILVHGKSEHGHALAYVILWQYALCIPVLILNVTIYLSIIRSVYLS 657          
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|470300756|ref|XP_004346997.1| (hypothetical protein CAOG_05312 [Capsaspora owczarzaki ATCC 30864] >gi|765554092|gb|KJE94713.1| hypothetical protein CAOG_005312 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 84.3445 bits (207), Expect = 2.134e-13
Identity = 51/187 (27.27%), Postives = 89/187 (47.59%), Query Frame = 0
Query:    8 DLIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDL------RGVEYISFYLITQTILMFTWAEEIVK---DQKGDEEEEEE 185
            D I + +  +  AT K++ L  +GV A   G+ N +  + L +LV +  +PAL FV+I   +T   +  LW LP+  L+++C G      +    R     +  V +C  FGN  ++ +A++ +L     +A     D D       RG  YI  Y +  TIL +++A +++      + DE E + 
Sbjct:    6 DEISNVILPAIKATAKVILLAAVGVAAKRLGILNSETSTRLSKLVLNFAVPALTFVSIAHAITFDNIKELWPLPLFGLLYICLGMAFGWIICRICRFPKAIRNLVMVCCAFGNSQTIPLALVSSLA--HSVAQLKQSDTDTPAAIIARGTSYIMLYTLIGTILRWSFAYKLLNPSPQTRADELERQH 190          
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1183482933|gb|ORZ06714.1| (auxin efflux carrier [Absidia repens])

HSP 1 Score: 78.5666 bits (192), Expect = 9.520e-12
Identity = 51/183 (27.87%), Postives = 88/183 (48.09%), Query Frame = 0
Query:    9 LIEDALSASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEP------LASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEE 185
            ++E  +SA   A  +++ +VL GV+ T  G F+      L RL      P LLF NI S +++ +L+ LW +PV     +   ++ A  +    RI+G  ++ V  C MF N  SL IA+I +L   E        A     D   RGV Y  FY +   I+ +++   +++  +   +++ +
Sbjct:    1 MLELVISA-LQAILQVITIVLFGVILTKTGHFDSSKQKWLSRLNLTFFTPCLLFSNIASTISLEKLVTLWPIPVFFCAFILVSWLAALWMLRLLRIQGDHRQFVIACTMFCNTNSLPIAIITSLAFSEAGHLLYWCADDTQQDVAARGVAYTIFYAMFCNIVRWSYGYHLLQQPQTAHDDDRD 182          
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1043306159|gb|OBZ90791.1| (putative transporter C5D6.04 [Choanephora cucurbitarum])

HSP 1 Score: 78.1814 bits (191), Expect = 1.096e-11
Identity = 50/179 (27.93%), Postives = 88/179 (49.16%), Query Frame = 0
Query:   23 KIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEP------LASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEG-EDE 194
            +++ +V IG V +  G  ++     L +L      P LLF NI S ++V RL+  W +PV  ++ V   + L+    + FR+    K+ V+ C+MF N  SL +A+I +L   E        +         RG+ Y+ F+ +   IL +++   +++ QK +EE+    E L   +DE
Sbjct:   25 QVMVIVFIGAVLSKLGYMDNDKQKWLSKLNLTFFTPCLLFSNIASVISVERLIDFWSIPVFYVLFVSISWTLSYIACSLFRVENHHKRFVSACVMFSNANSLPVAIIASLAVSEAGKKLYWDSDDSQSSISARGISYVLFFGLFGNILRWSYGYNLLQ-QKNEEEDNSSVETLRNSQDE 202          
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|661186162|emb|CDH51524.1| (auxin family transmembrane transporter [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-10
Identity = 47/173 (27.17%), Postives = 79/173 (45.66%), Query Frame = 0
Query:   16 ASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDL------RGVEYISFYLITQTILMFTWAEEIVKDQKGDEEE 182
            ++  A  +++ +VL G   T  G F +     L +L      P L+F NI S +++  L+  W +P    V+    F +   +   F +    ++ V  C MFGN  SL IA+I +L   E   +    + D       RGV YI F+ I   +L +++   +++    DEEE
Sbjct:    7 SAIQAVLQVMVVVLFGFCLTKLGFFTNDKQKWLSKLNLVFFTPCLMFSNIASTISMEHLLAFWPIPAFFAVYATLTFTMGNLMGHLFGLNAPYRRFVLACAMFGNTNSLPIAIITSLAVSEAGKTLFWNEDDTQESVAARGVSYILFFAIFGNLLRWSYGYSLLQKLPEDEEE 179          
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1183328276|gb|ORX58026.1| (auxin efflux carrier [Hesseltinella vesiculosa])

HSP 1 Score: 74.7146 bits (182), Expect = 2.039e-10
Identity = 44/162 (27.16%), Postives = 78/162 (48.15%), Query Frame = 0
Query:   27 LVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEP------LASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEE 182
            +V IGV  T  G  N+Q    L +L      P LLF NI S +++ +L+  W +PV  ++ +   + ++   +  F ++G+ ++ VT+C MF N  SL IA+I +L   E        A         RG+ Y  FY +   I  +++   +++  + D + 
Sbjct:    1 MVSIGVGITKAGYVNEQQQKWLSKLNMTFFTPCLLFTNIASVISIEKLLAFWPIPVFHVLFLFLSWAVSLVTSPLFGVQGVYRRFVTVCTMFCNTNSLPIAIISSLAFSEAGRLLFWHADDTQQTVAARGLAYTLFYAMFCNITRWSYGYHLLQPPRDDNDS 162          
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|545707130|ref|XP_005705880.1| (auxin efflux carrier [Galdieria sulphuraria] >gi|452822340|gb|EME29360.1| auxin efflux carrier [Galdieria sulphuraria])

HSP 1 Score: 73.9442 bits (180), Expect = 2.828e-10
Identity = 49/183 (26.78%), Postives = 85/183 (46.45%), Query Frame = 0
Query:   19 NATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILA--TCLTT----FFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDLRGVEYISFYLITQTILMFTWAEEIVKDQKGDEEEEEEAEALEGEDEV 195
            N TCK+V L  +G     +G    +   +L  +++ + LP LLF +I+  +    L+ LW +PV+A++ +  G++L    C  T    FFR      +A  +    GN   L + ++DTLC   P    +G  C      YIS +L+  + + +T      +  +G   E+       GE+E+
Sbjct:   15 NGTCKVVLLTAVGFYLAHKGQLRKEMSKNLSTIIFEILLPCLLFSSILRTLVNVGLLALWYIPVIAVLFLLLGWVLGQLVCKVTKPPPFFR------RACIVACALGNSNQLPVLIMDTLCGFYPSFQQLGSTCRDSATGYISLFLLVFSTVSWT---GFYRYLQGSTREDSVMN--NGENEL 186          
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1183498828|gb|ORZ22474.1| (auxin efflux carrier [Absidia repens])

HSP 1 Score: 73.559 bits (179), Expect = 5.020e-10
Identity = 47/178 (26.40%), Postives = 85/178 (47.75%), Query Frame = 0
Query:   24 IVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIGKKAVTLCLMFGNVGSLSIAMIDTLCADEP-----LASGVGPDC-DLRGVEYISFYLITQTILMFTWAEEIVKDQKGDE--EEEEEAEALEGED 193
            +  +V +G V   +G FN      L +L      P LLF N+ S ++  +L+  W +PV   V   S +++    T    +    ++ V  C+MF N  SL +A I +L   E        S   P+    RG+ Y  F+ I   +L +++  ++++ ++GDE  +E+EE +  + +D
Sbjct:   66 VTHVVTLGFVFAKKGYFNMDKQKWLSKLNLMYFTPCLLFSNVASIISFEKLIAFWPIPVFYYVFSISFYVMTQLSTRMLGLNPGYRRFVLACVMFQNTNSLPLATISSLAVSEASKILFWNSDDTPEAVAARGISYTLFFAIFGNLLRWSYGYQLLQKREGDEGYKEDEEHQTQQQQD 243          
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|729697641|emb|CEJ04949.1| (Putative Dynein light chain 1, cytoplasmic [Rhizopus microsporus])

HSP 1 Score: 72.7886 bits (177), Expect = 5.455e-10
Identity = 48/185 (25.95%), Postives = 87/185 (47.03%), Query Frame = 0
Query:   16 ASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIG---KKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDL------RGVEYISFYLITQTILMFTWAEEIVKDQKGDE----EEEEEAE 187
            AS  A  +++ +V  G +    G FN      L +L      P LLF NI S ++  +L+  W +PV  L+     +   T    F R+ G+    ++ VT C+MF N  S+ IA+I +L   + + +    D D       RG+ Y  F+ I   ++ +++  ++++ +  D+     E+EE +
Sbjct:    7 ASIQAILQVMVVVFFGALLARMGYFNMDKQRWLSKLNMVFFTPCLLFSNIASIISFQKLLAFWPIPVFYLIFTVMNY---TSSNVFSRLVGLSPAYRRFVTACVMFSNSNSVPIAIISSLAVSDAIKTLAWTDDDTSESVAARGISYTLFFAIFGNLIRWSYGYQLLQKRNEDDTSTIHEDEEVQ 188          
BLAST of EWM28636.1 vs. NCBI_GenBank
Match: gi|1178064518|gb|ORE18966.1| (auxin efflux carrier [Rhizopus microsporus])

HSP 1 Score: 72.7886 bits (177), Expect = 6.516e-10
Identity = 48/185 (25.95%), Postives = 88/185 (47.57%), Query Frame = 0
Query:   16 ASANATCKIVFLVLIGVVATAQGVFNDQGVSDLGRLVYHVTLPALLFVNIISEVTVARLMVLWKLPVLALVHVCSGFILATCLTTFFRIRGIG---KKAVTLCLMFGNVGSLSIAMIDTLCADEPLASGVGPDCDL------RGVEYISFYLITQTILMFTWAEEIVKDQKGDE----EEEEEAE 187
            AS  A  +++ +V +G +    G FN      L +L      P LLF NI S ++  +L+  W +PV  L+     +   T    F R+ G+    ++ VT C+MF N  S+ IA+I +L   + + +    D D       RG+ Y  F+ I   ++ +++  ++++ +  D+     E+EE +
Sbjct:    7 ASIQAILQVMVVVFLGALLARMGYFNMDKQRWLSKLNMVFFTPCLLFSNIASIISFQKLLAFWPIPVFYLIFALMNY---TSSNVFSRLVGLSPAYRRFVTACVMFSNSNSVPIAIISSLAVSDAVKTLAWTDDDTSESIAARGISYTLFFAIFGNLIRWSYGYQLLQKRNEDDTSTIHEDEEVQ 188          
The following BLAST results are available for this feature:
BLAST of EWM28636.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111055|gb|EWM28636.1|0.000e+0100.00auxin efflux carrier [Nannochloropsis gaditana][more]
gi|470300756|ref|XP_004346997.1|2.134e-1327.27hypothetical protein CAOG_05312 [Capsaspora owczar... [more]
gi|1183482933|gb|ORZ06714.1|9.520e-1227.87auxin efflux carrier [Absidia repens][more]
gi|1043306159|gb|OBZ90791.1|1.096e-1127.93putative transporter C5D6.04 [Choanephora cucurbit... [more]
gi|661186162|emb|CDH51524.1|1.861e-1027.17auxin family transmembrane transporter [Lichtheimi... [more]
gi|1183328276|gb|ORX58026.1|2.039e-1027.16auxin efflux carrier [Hesseltinella vesiculosa][more]
gi|545707130|ref|XP_005705880.1|2.828e-1026.78auxin efflux carrier [Galdieria sulphuraria] >gi|4... [more]
gi|1183498828|gb|ORZ22474.1|5.020e-1026.40auxin efflux carrier [Absidia repens][more]
gi|729697641|emb|CEJ04949.1|5.455e-1025.95Putative Dynein light chain 1, cytoplasmic [Rhizop... [more]
gi|1178064518|gb|ORE18966.1|6.516e-1025.95auxin efflux carrier [Rhizopus microsporus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2047rna2047Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications