rna2045, rna2045 (mRNA) Nannochloropsis gaditana

Overview
Namerna2045
Unique Namerna2045
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length813
Alignment locationCM002458.1:762124..764383 -

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Properties
Property NameValue
Producter to golgi transport-related protein
Orig transcript idgnl|cribi|Naga_100182g8.947.mrna
Orig protein idgnl|cribi|Naga_100182g8.947
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:762124..764383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100182g8gene1956Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28637.1cds2037Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2045rna2045-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2045 ID=rna2045|Name=rna2045|organism=Nannochloropsis gaditana|type=mRNA|length=813bp
ATGGACGTGGAGAATGAGGCAAGAGCTGGTTCTTCGGTCGGCGTCTCCGA
CCTGAAGGTAATGGGCGACCCCTCCCTCGCCTCGCAAGACCAGACCGTCG
AAGAGTACCTGAAAGTGCACTGCAGTCAATTAGTAGGAGACTTGAATGCG
CATGCTGAGAGCCTCATCAAGAATTTGCAGCACGAGCTCGAAAGAGGCAA
GGCGGAAATTATGGGCATGGTTCAGGGAAACACGGTCGGGCCAACCTCGA
GCGATGCGGGTGACTCCGGTGCCTCGACAAGTACTGCTACTGGGAATGTA
CCGGCGCGATCAGTGGCTGCGTCGACGGGCCCGCCCGGTAGCACGTTTCT
CACCGTGATCTTGACAGTAACAGACGGACCGTATGCAGGCACCGTCTTTC
GGCTTGTACAAAGCAAGGGGCGGAAAGAGTTTGTTGTCGGGAGATCAACG
GGTAAGAAAGTGAAGGAGCACGGGGCAAGCATGCCGCAAGACCCCGAGGT
CTCCACAGTGCATGGTCGCTTCGAGTGTCGCGCAGGCGGTAAAGTCATGT
ATGAGGATCTGGGTAGCACGAACGGAAGCTTCATTAACGGGGCCTGTCTG
GAGGAGAGGGTCCCGACACGCGTTCAAACGGGGGATGTGCTGAAGGACCG
TCCTGGGGTGTGTTGGGCGGATCGAAGTCGACAGCGCTTGGAACAGGGTG
GAGAGCGAGGGCTTTCTCCTGCGCAGCGTGAGGGCGTGCAGCCTGTGATC
ATTCCAGAGCTTGATCGATGTACAATAGGGAAAGATAAGCAAAGGGAAGA
GGGCCAGGAATAA
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protein sequence of rna2045

>rna2045-protein ID=rna2045-protein|Name=rna2045|organism=Nannochloropsis gaditana|type=polypeptide|length=503bp
MVIGPNSPDENVTSPSASETSKSYTAESYIASNANLMPQSTALATFKDIE
AKVGWNPSLLASPYSQTVRYLQVTDQDARPAPAKGIWVDVVGRNNRAVRR
NIGLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSCLSGHQ
GLLVDVKWVRKSFLQKAPHIAELRGRPPRAFSSANAASLATSRTVLLTAH
RLPAITGHNQLPTLYKKLEDFLGLDSKMLPSDALKSPQGVIRDLTYATTR
AEKRRLMKLLQEKEEEEIRKRRIQEQREAAARPLLELAEKARQALLASLP
HKRHLVHRGKRGTAPPPLDSTRRALSTPLPKTDASRRPKIGSSTTVWPSH
HLLLTTMSPETSLYINVLSISYPQTPLPLPVPEMSLRLPTLTSRDEDRIE
SLESRAQSHDHGSSPTNDPQSVLRTNLGTSTAYTHENDGGSTGCREDMDA
VNLIDECMKLVDESSSTKFAQSLPHFLQNVKLYFEAMAVSDEKGLRARGG
VTW
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mRNA from alignment at CM002458.1:762124..764383-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2045 ID=rna2045|Name=rna2045|organism=Nannochloropsis gaditana|type=mRNA|length=2260bp|location=Sequence derived from alignment at CM002458.1:762124..764383- (Nannochloropsis gaditana)
GATGTATGAACGTGAGCAATCAGAGGAGATAATAATGCGTCCTAGGATGC
CCAAATTTTCCCGCCGCTACCAAAATCAGTGCCCTTCAAATGGTCTAATC
ACGCGATTAAGTTTTGCCTACAGTTCTCTCGTCCCTATCAGTACGTAAGA
TTCCAATTTTAAGGGAAGATTTTTCTTCGAGCCCCAAGCGGAAGCGTTCC
TTTTCTCGATCCTCCTGCGGCATCACTTGCTTTCAAAGTACGCCATATCA
ACGTAATGCATTTCGCATCACAATGAAAGCACTAAGCTTCCAAATGTGCG
TCTAAATGTCGAATTTTAACCAATCATCTTAGATATCCTTGTCTTGCCTA
GCGAGTCGACCTCAACCGGGGGCCTCCCCGGTAACGGGCAAGCCCCTCCA
CCGGACCATGGTCATAGGGCCTAACTCACCGGACGAAAATGTAACAAGCC
CTAGCGCCTCAGAGACATCCAAATCATACACAGCGGAATCTTATATTGCT
TCTAATGCCAACTTAATGCCGCAGTCAACCGCATTGGCGACTTTCAAAGA
CATTGAGGCTAAAGTCGGGTGGAACCCCAGCTTGCTGGCCAGTCCGTACT
CCCAGACCGTGCGTTACTTGCAAGTTACGGACCAAGACGCTCGTCCTGCA
CCTGCCAAAGGCATATGGGTTGACGTGGTGGGAAGAAACAACAGGGCGGT
GAGACGAAACATTGGTTTGCTTCGCTTTTTAGGCCCAGTCCATTTTAGTA
AGGGGACCTGGGCTGGCATCGAGGTGCAGGGCGCTATCGTAGCCGACAAC
GCTAATGACGGAAGCGTGGACGGTGTACGCTACTTTTCGTGCCTGTCTGG
GCACCAAGGACTGCTGGTCGACGTCAAGTGGGTACGTAAGTCCTTCCTTC
AAAAGGCACCTCACATTGCAGAGCTCAGAGGACGCCCGCCTCGTGCCTTC
TCATCGGCAAACGCGGCATCTCTAGCGACTTCCCGCACTGTTTTGTTGAC
TGCTCACCGTCTCCCAGCTATCACTGGTCATAATCAATTGCCGACGCTTT
ACAAAAAGCTGGAGGATTTTTTGGGGCTTGACTCCAAGATGCTCCCATCC
GACGCGCTAAAAAGCCCACAAGGAGTTATCCGCGACCTAACGTATGCCAC
TACTAGGGCTGAAAAACGGCGACTCATGAAACTTTTGCAAGAGAAAGAGG
AAGAAGAAATCCGCAAGCGCAGGATACAGGAGCAAAGAGAAGCAGCCGCA
CGGCCTCTGCTCGAATTGGCAGAGAAAGCTCGCCAAGCATTGCTAGCCTC
CCTGCCACACAAAAGACACTTAGTGCACAGGGGGAAAAGGGGAACCGCGC
CCCCCCCTTTAGATTCCACCAGGAGGGCTTTGTCGACGCCCTTGCCCAAG
ACGGACGCGTCGCGGCGACCGAAGATAGGCAGCAGTACGACGGTATGGCC
ATCGCATCACTTGCTGCTCACCACAATGTCTCCCGAGACGTCTTTGTATA
TTAATGTCCTGTCCATTTCTTATCCACAGACTCCACTTCCGCTGCCTGTG
CCGGAAATGTCTCTCCGGCTTCCAACGTTGACGTCGCGGGACGAGGACAG
GATCGAGTCGCTTGAGTCACGGGCGCAATCTCACGATCACGGATCTTCGC
CCACTAATGACCCTCAGTCGGTGCTGCGGACGAATTTAGGCACGTCGACA
GCCTATACACACGAAAACGATGGAGGAAGTACCGGCTGTCGAGAAGACAT
GGACGCAGTCAACCTCATTGATGAATGCATGAAATTGGTGGATGAATCAT
CCAGCACAAAGTTCGCACAGTCTCTCCCTCATTTCTTGCAGAACGTCAAG
CTCTATTTCGAAGCCATGGCGGTGAGCGACGAGAAGGGCTTGAGGGCGAG
GGGGGGCGTAACTTGGTGAAAGCTCTGCGTAACATCACTAATGCACCCTC
CGGGCACAGTTACCGACGTGTGGAGCCTAAATTTTCCGGTGTGAAAAGAA
GCTGCGAATTCCTATGTACATTAATTGTCTTTTTCCATGCGGACGTTCGA
TATTTTCGTTTTTGGAGTTTACATTCCTATGGCGCCCAGAACTCGCTCAC
CGTGTCCTACTAGACGCAACCCTCTCTTCAAGATAAAACAATCAACACTT
TCCGATGCCTGTGTCCCGGTCGCAACGGTTTTCATTGCGCGGAAAAGTTA
ACTTGACTCAAGAAAACGTACGAAAGGAAATATTTTGGCTGGCTGGCTGG
CTGGCAACCC
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Coding sequence (CDS) from alignment at CM002458.1:762124..764383-

>rna2045 ID=rna2045|Name=rna2045|organism=Nannochloropsis gaditana|type=CDS|length=1512bp|location=Sequence derived from alignment at CM002458.1:762124..764383- (Nannochloropsis gaditana)
ATGGTCATAGGGCCTAACTCACCGGACGAAAATGTAACAAGCCCTAGCGC
CTCAGAGACATCCAAATCATACACAGCGGAATCTTATATTGCTTCTAATG
CCAACTTAATGCCGCAGTCAACCGCATTGGCGACTTTCAAAGACATTGAG
GCTAAAGTCGGGTGGAACCCCAGCTTGCTGGCCAGTCCGTACTCCCAGAC
CGTGCGTTACTTGCAAGTTACGGACCAAGACGCTCGTCCTGCACCTGCCA
AAGGCATATGGGTTGACGTGGTGGGAAGAAACAACAGGGCGGTGAGACGA
AACATTGGTTTGCTTCGCTTTTTAGGCCCAGTCCATTTTAGTAAGGGGAC
CTGGGCTGGCATCGAGGTGCAGGGCGCTATCGTAGCCGACAACGCTAATG
ACGGAAGCGTGGACGGTGTACGCTACTTTTCGTGCCTGTCTGGGCACCAA
GGACTGCTGGTCGACGTCAAGTGGGTACGTAAGTCCTTCCTTCAAAAGGC
ACCTCACATTGCAGAGCTCAGAGGACGCCCGCCTCGTGCCTTCTCATCGG
CAAACGCGGCATCTCTAGCGACTTCCCGCACTGTTTTGTTGACTGCTCAC
CGTCTCCCAGCTATCACTGGTCATAATCAATTGCCGACGCTTTACAAAAA
GCTGGAGGATTTTTTGGGGCTTGACTCCAAGATGCTCCCATCCGACGCGC
TAAAAAGCCCACAAGGAGTTATCCGCGACCTAACGTATGCCACTACTAGG
GCTGAAAAACGGCGACTCATGAAACTTTTGCAAGAGAAAGAGGAAGAAGA
AATCCGCAAGCGCAGGATACAGGAGCAAAGAGAAGCAGCCGCACGGCCTC
TGCTCGAATTGGCAGAGAAAGCTCGCCAAGCATTGCTAGCCTCCCTGCCA
CACAAAAGACACTTAGTGCACAGGGGGAAAAGGGGAACCGCGCCCCCCCC
TTTAGATTCCACCAGGAGGGCTTTGTCGACGCCCTTGCCCAAGACGGACG
CGTCGCGGCGACCGAAGATAGGCAGCAGTACGACGGTATGGCCATCGCAT
CACTTGCTGCTCACCACAATGTCTCCCGAGACGTCTTTGTATATTAATGT
CCTGTCCATTTCTTATCCACAGACTCCACTTCCGCTGCCTGTGCCGGAAA
TGTCTCTCCGGCTTCCAACGTTGACGTCGCGGGACGAGGACAGGATCGAG
TCGCTTGAGTCACGGGCGCAATCTCACGATCACGGATCTTCGCCCACTAA
TGACCCTCAGTCGGTGCTGCGGACGAATTTAGGCACGTCGACAGCCTATA
CACACGAAAACGATGGAGGAAGTACCGGCTGTCGAGAAGACATGGACGCA
GTCAACCTCATTGATGAATGCATGAAATTGGTGGATGAATCATCCAGCAC
AAAGTTCGCACAGTCTCTCCCTCATTTCTTGCAGAACGTCAAGCTCTATT
TCGAAGCCATGGCGGTGAGCGACGAGAAGGGCTTGAGGGCGAGGGGGGGC
GTAACTTGGTGA
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Synonyms
Publications