EWM28637.1, cds2037 (CDS) Nannochloropsis gaditana

Overview
NameEWM28637.1
Unique Namecds2037
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:762465..763976 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28637.1
Producter to golgi transport-related protein
Orig transcript idgnl|cribi|Naga_100182g8.947.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:762465..763976 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR000938CAP-Gly_domain
Homology
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|585111056|gb|EWM28637.1| (er to golgi transport-related protein [Nannochloropsis gaditana])

HSP 1 Score: 1033.48 bits (2671), Expect = 0.000e+0
Identity = 503/503 (100.00%), Postives = 503/503 (100.00%), Query Frame = 0
Query:    1 MVIGPNSPDENVTSPSASETSKSYTAESYIASNANLMPQSTALATFKDIEAKVGWNPSLLASPYSQTVRYLQVTDQDARPAPAKGIWVDVVGRNNRAVRRNIGLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSCLSGHQGLLVDVKWVRKSFLQKAPHIAELRGRPPRAFSSANAASLATSRTVLLTAHRLPAITGHNQLPTLYKKLEDFLGLDSKMLPSDALKSPQGVIRDLTYATTRAEKRRLMKLLQEKEEEEIRKRRIQEQREAAARPLLELAEKARQALLASLPHKRHLVHRGKRGTAPPPLDSTRRALSTPLPKTDASRRPKIGSSTTVWPSHHLLLTTMSPETSLYINVLSISYPQTPLPLPVPEMSLRLPTLTSRDEDRIESLESRAQSHDHGSSPTNDPQSVLRTNLGTSTAYTHENDGGSTGCREDMDAVNLIDECMKLVDESSSTKFAQSLPHFLQNVKLYFEAMAVSDEKGLRARGGVTW 503
            MVIGPNSPDENVTSPSASETSKSYTAESYIASNANLMPQSTALATFKDIEAKVGWNPSLLASPYSQTVRYLQVTDQDARPAPAKGIWVDVVGRNNRAVRRNIGLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSCLSGHQGLLVDVKWVRKSFLQKAPHIAELRGRPPRAFSSANAASLATSRTVLLTAHRLPAITGHNQLPTLYKKLEDFLGLDSKMLPSDALKSPQGVIRDLTYATTRAEKRRLMKLLQEKEEEEIRKRRIQEQREAAARPLLELAEKARQALLASLPHKRHLVHRGKRGTAPPPLDSTRRALSTPLPKTDASRRPKIGSSTTVWPSHHLLLTTMSPETSLYINVLSISYPQTPLPLPVPEMSLRLPTLTSRDEDRIESLESRAQSHDHGSSPTNDPQSVLRTNLGTSTAYTHENDGGSTGCREDMDAVNLIDECMKLVDESSSTKFAQSLPHFLQNVKLYFEAMAVSDEKGLRARGGVTW
Sbjct:    1 MVIGPNSPDENVTSPSASETSKSYTAESYIASNANLMPQSTALATFKDIEAKVGWNPSLLASPYSQTVRYLQVTDQDARPAPAKGIWVDVVGRNNRAVRRNIGLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSCLSGHQGLLVDVKWVRKSFLQKAPHIAELRGRPPRAFSSANAASLATSRTVLLTAHRLPAITGHNQLPTLYKKLEDFLGLDSKMLPSDALKSPQGVIRDLTYATTRAEKRRLMKLLQEKEEEEIRKRRIQEQREAAARPLLELAEKARQALLASLPHKRHLVHRGKRGTAPPPLDSTRRALSTPLPKTDASRRPKIGSSTTVWPSHHLLLTTMSPETSLYINVLSISYPQTPLPLPVPEMSLRLPTLTSRDEDRIESLESRAQSHDHGSSPTNDPQSVLRTNLGTSTAYTHENDGGSTGCREDMDAVNLIDECMKLVDESSSTKFAQSLPHFLQNVKLYFEAMAVSDEKGLRARGGVTW 503          
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|1045445375|gb|OCF39234.1| (hypothetical protein I317_06952 [Kwoniella heveanensis CBS 569])

HSP 1 Score: 73.9442 bits (180), Expect = 3.298e-10
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0
Query:   87 WVDVVGRNNRAVRRNI----GLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSC 145
            WV VVG +   VR N     G+LRFLGP  F +G WAG+E++G       NDGSV+GV YF+C
Sbjct:  167 WVPVVGEH---VRINSMGYEGVLRFLGPTQFKEGVWAGVELEGGFAGKGKNDGSVEGVSYFTC 226          
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|1045443239|gb|OCF37332.1| (hypothetical protein I316_01241 [Kwoniella heveanensis BCC8398])

HSP 1 Score: 73.9442 bits (180), Expect = 3.385e-10
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0
Query:   87 WVDVVGRNNRAVRRNI----GLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSC 145
            WV VVG +   VR N     G+LRFLGP  F +G WAG+E++G       NDGSV+GV YF+C
Sbjct:  167 WVPVVGEH---VRINSMGYEGVLRFLGPTQFKEGVWAGVELEGGFAGKGKNDGSVEGVSYFTC 226          
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|1101835491|ref|XP_019013133.1| (hypothetical protein I206_02630 [Kwoniella pini CBS 10737] >gi|1045458470|gb|OCF51914.1| hypothetical protein I206_02630 [Kwoniella pini CBS 10737])

HSP 1 Score: 72.4034 bits (176), Expect = 1.146e-9
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 0
Query:   87 WVDVVGRNNRAVRRNI----GLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSC 145
            W  VVG     VR N     G LRFLGP  F +G WAG+E++G       NDG+VDGV YFSC
Sbjct:  164 WTPVVGEK---VRINSMGYEGALRFLGPTQFKEGVWAGVELEGGFAGKGKNDGTVDGVAYFSC 223          
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|388857886|emb|CCF48551.1| (related to Restin (intermediate filament-associated protein) [Ustilago hordei])

HSP 1 Score: 71.633 bits (174), Expect = 2.140e-9
Identity = 46/146 (31.51%), Postives = 72/146 (49.32%), Query Frame = 0
Query:   14 SPSASETSKSYTAESYIASNANLMPQSTALATFKDIEAKVGWNPSLLASPYSQTVRYLQVTDQDARPAPAKGIWVDVVGRNNRAVRRNIGLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSCLSGHQGLLVDVKWV 159
            SPSAS+ S   +A S+ ++ A+          + DI A+  + PS+++   S T          AR    +G  +++    +    + +G+LR LGPV F  G +AG+E+ G  V    NDGSV G +YF+C  G+ GL      V
Sbjct:  135 SPSASDLSPG-SASSFPSAVASTSRSVATPKRYSDIHARSSYTPSMVSRTPSHTSHASSTAASCARQDIRRGRQLEIGDLVHMETSQLVGVLRHLGPVQFKAGFYAGLELTGDSVGKGKNDGSVQGTQYFACAPGN-GLFCPASKV 278          
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|1102539100|ref|XP_019045201.1| (hypothetical protein I302_05589 [Kwoniella bestiolae CBS 10118] >gi|1045429782|gb|OCF24131.1| hypothetical protein I302_05589 [Kwoniella bestiolae CBS 10118])

HSP 1 Score: 71.2478 bits (173), Expect = 2.642e-9
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 0
Query:   87 WVDVVGRNNRAVRRNI----GLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSC 145
            WV VVG     VR N     G+LRFLGP  F +G WAG+E++G       NDG+V+G  YF+C
Sbjct:  166 WVPVVGEK---VRINSMGYEGILRFLGPTQFKEGVWAGVELEGGFAGKGKNDGTVEGTSYFTC 225          
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|1069905931|ref|XP_018261949.1| (hypothetical protein I303_04964 [Kwoniella dejecticola CBS 10117] >gi|1039710243|gb|OBR84107.1| hypothetical protein I303_04964 [Kwoniella dejecticola CBS 10117])

HSP 1 Score: 69.3218 bits (168), Expect = 9.760e-9
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0
Query:   87 WVDVVGRNNRAVRRNI----GLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSC 145
            W  V+G     VR N     G LRFLGP  F +G WAG+E++G       NDG+VDGV YF+C
Sbjct:  164 WAPVLGER---VRINSMGYEGTLRFLGPTQFKEGVWAGVELEGGFAGKGKNDGTVDGVAYFTC 223          
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|1098865906|emb|SAM81581.1| (related to Restin (intermediate filament-associated protein) [Ustilago bromivora])

HSP 1 Score: 67.3958 bits (163), Expect = 4.331e-8
Identity = 43/136 (31.62%), Postives = 67/136 (49.26%), Query Frame = 0
Query:   14 SPSASETSKSYTAESYIASNANLMPQSTALATFKDIEAKVGWNPSLLASPYSQTVRYLQVTDQDARPAPAKGIWVDVVGRNNRAVRRNIGLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSCLSGH 149
            SPSAS+ S   +A S+ ++ A+          + DI A+  + PS+++   S T          AR    +G  +++           +G+LR LGPV F  G +AG+E+ G  V    NDGSV G +YF+C  G+
Sbjct:  137 SPSASDLSPG-SASSFPSAVASTSRSVATPKRYSDIHARSSYTPSMVSRTSSHTSHASSTAASRAREDIRRGRQLEIGDLVRMEESELVGVLRHLGPVQFKAGFYAGLELTGDSVGKGKNDGSVQGTQYFACAPGN 271          
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|808373398|ref|XP_012191718.1| (ER to Golgi transport-related protein [Pseudozyma hubeiensis SY62] >gi|501309273|dbj|GAC98131.1| ER to Golgi transport-related protein [Pseudozyma hubeiensis SY62])

HSP 1 Score: 65.855 bits (159), Expect = 1.248e-7
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 0
Query:   46 FKDIEAKVGWNPSLLASPYSQTVRYLQVTDQDARPAPAKGIWV---DVVGRNNRAVRRNIGLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSCLSGH 149
            + D+  + G+ PS ++   S T      T   AR    +G  +   DVV  +   +   +G+LR LGPV F  G +AG+E+ G  V    NDGSV G +YF+C  G+
Sbjct:  165 YSDVHGRAGFTPSAISRTPSHTS---STTASRAREHIRRGRELEIGDVVRMDGSEL---VGVLRHLGPVDFKPGFYAGLELTGDSVGKGKNDGSVQGTQYFACAPGN 265          
BLAST of EWM28637.1 vs. NCBI_GenBank
Match: gi|1071041504|ref|XP_018280644.1| (hypothetical protein CC85DRAFT_315955 [Cutaneotrichosporon oleaginosus] >gi|831334610|gb|KLT44153.1| hypothetical protein CC85DRAFT_315955 [Cutaneotrichosporon oleaginosus])

HSP 1 Score: 65.0846 bits (157), Expect = 2.013e-7
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 0
Query:  103 GLLRFLGPVHFSKGTWAGIEVQGAIVADNANDGSVDGVRYFSC 145
            G LR+LGP H   G WAG+E++G       NDGSVD V+YF C
Sbjct:  192 GTLRYLGPTHIRDGIWAGVELEGGFKGKGRNDGSVDNVKYFQC 234          
The following BLAST results are available for this feature:
BLAST of EWM28637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111056|gb|EWM28637.1|0.000e+0100.00er to golgi transport-related protein [Nannochloro... [more]
gi|1045445375|gb|OCF39234.1|3.298e-1050.79hypothetical protein I317_06952 [Kwoniella heveane... [more]
gi|1045443239|gb|OCF37332.1|3.385e-1050.79hypothetical protein I316_01241 [Kwoniella heveane... [more]
gi|1101835491|ref|XP_019013133.1|1.146e-950.79hypothetical protein I206_02630 [Kwoniella pini CB... [more]
gi|388857886|emb|CCF48551.1|2.140e-931.51related to Restin (intermediate filament-associate... [more]
gi|1102539100|ref|XP_019045201.1|2.642e-947.62hypothetical protein I302_05589 [Kwoniella bestiol... [more]
gi|1069905931|ref|XP_018261949.1|9.760e-947.62hypothetical protein I303_04964 [Kwoniella dejecti... [more]
gi|1098865906|emb|SAM81581.1|4.331e-831.62related to Restin (intermediate filament-associate... [more]
gi|808373398|ref|XP_012191718.1|1.248e-734.58ER to Golgi transport-related protein [Pseudozyma ... [more]
gi|1071041504|ref|XP_018280644.1|2.013e-753.49hypothetical protein CC85DRAFT_315955 [Cutaneotric... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2045rna2045Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications