rna203, rna203 (mRNA) Nannochloropsis gaditana

Overview
Namerna203
Unique Namerna203
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1393
Alignment locationCM002455.1:524800..526348 +

Link to JBrowse

Properties
Property NameValue
Productpolyadenylate-binding protein 2
Orig transcript idgnl|cribi|Naga_100013g14.9819.mrna
Orig protein idgnl|cribi|Naga_100013g14.9819
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:524800..526348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g14gene194Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna203rna203-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30531.1cds203Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna203 ID=rna203|Name=rna203|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp
GGCTGGATATGGCCCCGTGACAAACTATGTGACCGGAGCTATCCATTCCT
CGGGCCCTCCTTCCAACCCTGCGCCCCTCCTCTCGCCTGGACCTCACGGC
ATAAGGAACAGTCATCTTCAACTTTAGACAACTTACCCCCCACATTCCAC
GTCCACTACATACGTCTCAGGAATTATGGCGTCGGACTTATCGCACGCAC
GGAGGAAGAGAAGAAAATGCAGTCACTTCTTTTTTTCATTCCTTTTTCTT
GCAAACTTCTCCGTCACCTCGGCCTTCCACACCATGCTCCCATCCATGCA
CCGACCCGTGAAGGAAACGCGCCGCCGCACGCTCATGCGCGCGCGGGCGA
AGGAAGAAAGCCTGGGTAATGCAGTGGACGCGAACTTGTACGTTGACCGC
AGTTGCTCGGGTTGTGGAACATGTCGGAGCATCTGTCCTGGTGTCTTTGG
TGACCTAGGGCTGCAATCGGTAGTGGAGAGAGAGCCTTTGGATAAAAACG
AGACACGGGCTGCGTACCGTGCAATGGTCACATGTCCTATGGGTGCGATC
AGATTGCGTAAGCCAGATCCTCTTGTGAAAGAGGTGGTGATGCACGACTT
CCCCACCCCTCTGGATCCTGTAGCGCTTCCCGGAGTGTATTTTCTGGGAT
ATCACAACCGGGAGAGCATGGGTGTAACGCCGTACTTAATCGTGCGGGAC
AATGGCGAAGGAAACATAATGATAGATGCCCCACGATTCAATGGACGACT
GGCACAGCAGATCGAGTCTTTGGGGGGAGTCCGATACATGATAGTGACAC
ACGAAGGCTCTGCGCCCCATCACGACCTGTGGCACGCCTTCTTCCCCTCG
TCTGAACGAGTCGTGCACCGGATGGACGTGACGCGAGAGATGAGGGGGCA
GGTGGAGGCTATCCTTCAAGGAAAGGGACCTTGGCGTATCGACGACGACG
TGAAGATCGTGGCGCTCCCCGGCTACTCTCCTGGCTCTATCGGCGTCCTT
TTCCATCCCTCGTCAGTGAGCAGCAATGGAATAGAGGAGGATTCGAAATG
GGGAAAGGATGGAGAGCGAAATGGCATCCTCTTCAGCGGGCGGACCCTGG
GGTGGTCTGCCCGCTTGAATCGCTTGGATGGCTTCGCGCAATTTTCTCGC
GGAAGCTTGAGGAAACAAGCAGCGAGTATCAAGGGGCTGGGCAAGGAAGA
CTTTGCGTGGATACTTCCCGCGGAGGGGCTCAAATTCCATCTGCCTGGAG
GAGGGAATGCGGAGACGAGAGAACGTCTCTTGGCGGAGGCGGCCGAGTTG
TTTCTGGCCCGGGGCCGCGTGGGCGGGCTAAATGTATAAAGCAAGCATGT
CAATTAGACCCCGCGGAGGTGCATGTCGTGTCGATAATCTTCT
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protein sequence of rna203

>rna203-protein ID=rna203-protein|Name=rna203|organism=Nannochloropsis gaditana|type=polypeptide|length=247bp
MSAEAQLAAGVEEQGGGEEEEEYYEEEEDPGMDGAVPGEDEQREGDNEGQ
DDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGA
AGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTIN
RVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRH
NVHGFFRGRGGGRGRARGGFRGGYGGGYGYHRPRGRGRGRGRYHPYY
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mRNA from alignment at CM002455.1:524800..526348+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna203 ID=rna203|Name=rna203|organism=Nannochloropsis gaditana|type=mRNA|length=1549bp|location=Sequence derived from alignment at CM002455.1:524800..526348+ (Nannochloropsis gaditana)
CTGAGACGTATGTAGTGGACGTGGAATGTGGGGGGTAAGTTGTCTAAAGT
TGAAGATGACTGTTCCTTATGCCGTGAGGTCCaggcgagaggaggggcgc
agggttggaaggagggcccgaGGAATGGATAGCTCCGGTCACATAGTTTG
TCACGGGGCCATATCCAGCCTGTCCCATCTTTTTCAATCCACTACAGCGC
GCTTCTCGGTTCTTGTGGGTGTGGTGTTTGCTTTGCAGGCACGCGCCTGC
GGTCAGTGGGGCTGTGTGGTTCTCCCAGACGGGCGGGGGCAGTAGCTTTT
GCACGCAACCAAGGAAGCATCTACGAGAACCTATTTTTTCCCATTTAATC
TTAGTTAAACTCTCTTGTGCACATGACAGGCTTACCAGCGCAACATTCAA
ATCTGCACCATGAGCGCCGAGGCACAGTTGGCCGCTGGGGTCGAGGaaca
aggcggaggggaggaggaagaagaatactacgaggaggaggaggaccccg
GGATGGACGGTGCAGTCCCCGGTGAAGACGAGCAGAGAGAAGGCGACAAT
GAGGGTCAAGACGACGGTACAGGCGCAGCCACGCACGATGATCCAGAGCA
TTTGGCAGCGGAGCTTCAGCGGCAGCAAGAGAAGATCCgtcaggaagagg
agaagctgaAGGAAATGATGAAGGATGTCgaggcctcctccgcgggcGCG
GTAGGAGCAGCTGGTGGCGTGGAAGAAGGTGCAAACGGCGAAGCAAATGC
AGCGGGACAGGCAGCCATTGATGAGAATTCAATGTGAGTATGACGGCATG
GTTCACAAGTGGTGATCGGTAGTTCGTGGGAGACGCGTTGATTTCCGGTC
GCTTTCATACGCGCGGACGGAGTGCCAGTTACCGATGAGTAGAGCTCACC
AATTGTAGTCAGTGTTGCTTTTTGATATCAATAATGTTTGAAGTAACTGA
AAGACGTAAGTCCCCTCTGTATCCTTGCACGGGTCaccgctcctttcctc
cagctaCGTCGGTCAGGTCGACTACGAAGTCACGCCCGAGGAATTACAGG
CTCACTTCCAAGACTGCGGGACAATCAACCGGGTCACGATTCTCTGCGAC
AAGCACACAGGGCGACCGAAAGGTTTCGCGTACGTGGAGTTTCTGGAGAA
GGCCTCAGTGGACGGGGCCTTGAAACTGGACAACTCGCTCTTGAAGGGGC
GTCCGATCAAGGTGACGCACAAACGGCACAACGTGCACGGGTTTTtccga
ggaaggggtggaggaaggggccgggCTCGGGGGGGATTCCGCGGCGGGTA
TGGAGGGGGCTATGGGTATCATCGGCcacggggcagggggagggggaggg
gaagatatCACCCATATTACTAGGGCGGTCTGTGTGGGATGGTGACAGtg
ttgaagagggaggactgCGGGAGCATTTTTGGTGATGCGCCTCGTGCTCT
GACAAGGACGGGACCGGTAAAAGCTGGGAGTAACGTACCTGAGccgatgg
aggaaaggagcgacaAATACTAAATGAAACCTTCCAGGTGattgttttt
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Coding sequence (CDS) from alignment at CM002455.1:524800..526348+

>rna203 ID=rna203|Name=rna203|organism=Nannochloropsis gaditana|type=CDS|length=1488bp|location=Sequence derived from alignment at CM002455.1:524800..526348+ (Nannochloropsis gaditana)
ATGAGCGCCGAGGCACAGTTGGCCGCTGGGGTCGAGGaacaaggcggagg
ggaggaggaagaagaatactacgaggaggaggaggaccccgGGATGGACG
GTGCAGTCCCCGGTGAAGACGAGCAGAGAGAAGGCGACAATGAGGGTCAA
GACGACGGTACAGGCGCAGCCACGCACGATGATCCAGAGCATTTGGCAGC
GGAGCTTCAGCGGCAGCAAGAGAAGATCCgtcaggaagaggagaagctga
AGGAAATGATGAAGGATGTCgaggcctcctccgcgggcGCGGTAGGAGCA
GCTGGTGGCGTGGAAGAAGGTGCAAACGGCGAAGCAAATGCAGCGGGACA
GGCAGCCATTGATGAGAATTCAATctaCGTCGGTCAGGTCGACTACGAAG
TCACGCCCGAGGAATTACAGGCTCACTTCCAAGACTGCGGGACAATCAAC
CGGGTCACGATTCTCTGCGACAAGCACACAGGGCGACCGAAAGGTTTCGC
GTACGTGGAGTTTCTGGAGAAGGCCTCAGTGGACGGGGCCTTGAAACTGG
ACAACTCGCTCTTGAAGGGGCGTCCGATCAAGGTGACGCACAAACGGCAC
AACGTGCACGGGTTTTtccgaggaaggggtggaggaaggggccgggCTCG
GGGGGGATTCCGCGGCGGGTATGGAGGGGGCTATGGGTATCATCGGCcac
ggggcagggggagggggaggggaagatatCACCCATATTACTAGATGAGC
GCCGAGGCACAGTTGGCCGCTGGGGTCGAGGaacaaggcggaggggagga
ggaagaagaatactacgaggaggaggaggaccccgGGATGGACGGTGCAG
TCCCCGGTGAAGACGAGCAGAGAGAAGGCGACAATGAGGGTCAAGACGAC
GGTACAGGCGCAGCCACGCACGATGATCCAGAGCATTTGGCAGCGGAGCT
TCAGCGGCAGCAAGAGAAGATCCgtcaggaagaggagaagctgaAGGAAA
TGATGAAGGATGTCgaggcctcctccgcgggcGCGGTAGGAGCAGCTGGT
GGCGTGGAAGAAGGTGCAAACGGCGAAGCAAATGCAGCGGGACAGGCAGC
CATTGATGAGAATTCAATctaCGTCGGTCAGGTCGACTACGAAGTCACGC
CCGAGGAATTACAGGCTCACTTCCAAGACTGCGGGACAATCAACCGGGTC
ACGATTCTCTGCGACAAGCACACAGGGCGACCGAAAGGTTTCGCGTACGT
GGAGTTTCTGGAGAAGGCCTCAGTGGACGGGGCCTTGAAACTGGACAACT
CGCTCTTGAAGGGGCGTCCGATCAAGGTGACGCACAAACGGCACAACGTG
CACGGGTTTTtccgaggaaggggtggaggaaggggccgggCTCGGGGGGG
ATTCCGCGGCGGGTATGGAGGGGGCTATGGGTATCATCGGCcacggggca
gggggagggggaggggaagatatCACCCATATTACTAG
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Synonyms
Publications