EWM30531.1, cds203 (CDS) Nannochloropsis gaditana

Overview
NameEWM30531.1
Unique Namecds203
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:525209..525582 +
Alignment locationCM002455.1:525803..526172 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30531.1
Productpolyadenylate-binding protein 2
Orig transcript idgnl|cribi|Naga_100013g14.9819.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:525209..525582 +
CM002455.1supercontigCM002455.1:525803..526172 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|585113195|gb|EWM30531.1| (polyadenylate-binding protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 492.656 bits (1267), Expect = 4.742e-176
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 MSAEAQLAAGVEEQGGGEEEEEYYEEEEDPGMDGAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGFFRGRGGGRGRARGGFRGGYGGGYGYHRPRGRGRGRGRYHPYY 247
            MSAEAQLAAGVEEQGGGEEEEEYYEEEEDPGMDGAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGFFRGRGGGRGRARGGFRGGYGGGYGYHRPRGRGRGRGRYHPYY
Sbjct:    1 MSAEAQLAAGVEEQGGGEEEEEYYEEEEDPGMDGAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGFFRGRGGGRGRARGGFRGGYGGGYGYHRPRGRGRGRGRYHPYY 247          
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|636607575|ref|XP_008034922.1| (polyadenylate-binding protein 2 [Trametes versicolor FP-101664 SS1] >gi|392568671|gb|EIW61845.1| polyadenylate-binding protein 2 [Trametes versicolor FP-101664 SS1])

HSP 1 Score: 145.206 bits (365), Expect = 8.903e-40
Identity = 82/174 (47.13%), Postives = 99/174 (56.90%), Query Frame = 0
Query:   32 MDGAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
            +D   P  +E    DN         A  DDPE L   ++++ E++ +E  KL+E+        A A  A      G         +AA D  SIYVG VDY  TPEE+Q HFQ CGTINRVTILCDK TG PKG+AYVEF E   VD AL +DNSL +GR IKVT KR N+ GF
Sbjct:    4 VDATTPTLNEDTVIDN---------AEEDDPEILL--MKQRVEEMEREATKLREL-------QAAAEKAERSTPTGDQPMETEEEKAATDSRSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFSETEHVDAALSMDNSLFRGRLIKVTAKRTNIPGF 159          
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|325186974|emb|CCA21518.1| (polyadenylatebinding protein 2 putative [Albugo laibachii Nc14])

HSP 1 Score: 145.976 bits (367), Expect = 1.702e-39
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 0
Query:   68 ELQRQQEKIRQEEEKLKEMMKDVE---------------ASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
            +++R+ +++ +E  KL EM   VE               AS++G+ G A G     +   N     A+D++S+YVGQVDY  TPEELQA FQ CGTINRVTILCDK TG+PKG+AY+EF  K +V+ AL L++++ +GR +KVT KR NV GF
Sbjct:   41 DMKRRVKEMEEEAAKLSEMQSQVESQMGKNTASSLNELNASASGSSGHAIGSNSNTSTNPNGGSSTALDDSSVYVGQVDYGSTPEELQALFQSCGTINRVTILCDKFTGQPKGYAYIEFASKDAVESALLLNDTMFRGRQLKVTPKRQNVRGF 193          
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|1184853974|gb|OSC99219.1| (polyadenylate-binding protein 2 [Pycnoporus coccineus BRFM310])

HSP 1 Score: 144.05 bits (362), Expect = 2.902e-39
Identity = 79/171 (46.20%), Postives = 101/171 (59.06%), Query Frame = 0
Query:   38 GEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMM---KDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
             + E     N+  +     +  DDPE L   ++++ E++ +E  KL+E+    +  E S+  A       EE          +AA+D  SIYVG VDY  TPEE+Q HFQ CGTINRVTILCDK TG PKG+AYVEF E   VD AL +DNSL +GR IKVT KR N+ GF
Sbjct:    2 ADTESTNPTNDASETVIDNSEDDDPEILL--MKQRVEEMEREANKLRELQAAAEKAERSTPSAEQVPMETEEE---------KAAVDSRSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFSEPEHVDAALAMDNSLFRGRLIKVTPKRTNIPGF 161          
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|752353974|gb|KIO13021.1| (hypothetical protein M404DRAFT_993987 [Pisolithus tinctorius Marx 270])

HSP 1 Score: 142.124 bits (357), Expect = 1.820e-38
Identity = 79/158 (50.00%), Postives = 100/158 (63.29%), Query Frame = 0
Query:   51 DDGTGAATHDDPEHLAAELQRQQ---EKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
            +D T     D  E  + E+Q  +   E++ +E +KL+E+    E+ S+GA    GG ++G   E     +A  D  SI+VG VDY  TPEE+Q HFQ CGTINRVTILCDK TG PKG+AYVEF E   +D AL +DNSL +GR IKVT KR NV GF
Sbjct:   12 NDSTDPTFDDAEEAESKEIQLMKLRVEEMEREAKKLRELQAAAESVSSGA----GGSDQGVPMETEE-DRAIADSRSIFVGNVDYGATPEEIQGHFQACGTINRVTILCDKFTGHPKGYAYVEFAEPDFIDAALAMDNSLFRGRLIKVTAKRTNVPGF 164          
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|1023277785|gb|KZT72636.1| (RNA-binding domain-containing protein [Daedalea quercina L-15889])

HSP 1 Score: 142.124 bits (357), Expect = 4.214e-38
Identity = 86/192 (44.79%), Postives = 114/192 (59.38%), Query Frame = 0
Query:   62 PEHLAAEL-----QRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAA-------GQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF-FRGRGGGRGRARGGFRGGYGGGYGYHRPRGRGRGR 240
            P H A ++     + + ++I   +++++EM +  EA+    + AA    E A+ EA+ +        +AA D  SI+VG VDY  TPEE+QAHFQ CG INRVTILCDK TG PKG+AYVEF E++ V+ AL +DNSL +GR IKVT KR N+ GF      GG      G   G   GY  +R RGR R R
Sbjct:    9 PSHTADQIVDDGEEEESKEILLMKQRVEEMER--EANKLRELQAAAEKAERASSEADTSVPMETEDDKAAADTRSIFVGNVDYSATPEEIQAHFQACGVINRVTILCDKFTGHPKGYAYVEFAEESHVEAALAMDNSLFRGRLIKVTAKRTNIPGFNRGRGRGGYRGGYRGGYRGGSPGYAPYRARGRTRAR 198          
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|1026950579|ref|XP_016613147.1| (hypothetical protein SPPG_00782 [Spizellomyces punctatus DAOM BR117] >gi|907099872|gb|KND05108.1| hypothetical protein SPPG_00782 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 139.813 bits (351), Expect = 1.500e-37
Identity = 72/156 (46.15%), Postives = 97/156 (62.18%), Query Frame = 0
Query:   50 QDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
            +D G G  T +D +     ++++ +++  E +KL+EM   VE            +    NGE +A  +  +D  SIY+G VDY  TPEE+QAHFQ CGTINRVTILCDK TG PKG+AYVEF + + V  AL L++SL KGR IKV+ KR N+ G 
Sbjct:   16 EDAGLGGGTEEDMDQEVEAMKQRIKEMEAEAQKLREMQAQVEKE----------MHMSTNGEGDADSKEEVDSRSIYIGNVDYSSTPEEIQAHFQSCGTINRVTILCDKWTGHPKGYAYVEFADPSIVANALVLNDSLFKGRLIKVSAKRTNLPGM 161          
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|751742785|gb|KIM91059.1| (hypothetical protein PILCRDRAFT_162667 [Piloderma croceum F 1598])

HSP 1 Score: 138.658 bits (348), Expect = 1.976e-37
Identity = 74/139 (53.24%), Postives = 95/139 (68.35%), Query Frame = 0
Query:   69 LQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAG--QAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
            ++++ E++ +E  KL+E+    +A++A +    GG  EGA GE       ++A D  S++VG VDY  TPEE+Q HFQ CGTINRVTILCDK TG PKGFAYVEF E   +D AL +DNSL +GR IKVT KR NV GF
Sbjct:    3 MKQRVEEMEREANKLREL----QAAAAESNNVEGG--EGAAGEPMETDEDKSAADSRSVFVGNVDYGATPEEIQGHFQACGTINRVTILCDKFTGHPKGFAYVEFAEPEHIDAALAMDNSLFRGRLIKVTAKRTNVPGF 135          
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|597984431|ref|XP_007364279.1| (RNA-binding domain-containing protein, partial [Dichomitus squalens LYAD-421 SS1] >gi|395330550|gb|EJF62933.1| RNA-binding domain-containing protein, partial [Dichomitus squalens LYAD-421 SS1])

HSP 1 Score: 138.272 bits (347), Expect = 2.093e-37
Identity = 72/137 (52.55%), Postives = 91/137 (66.42%), Query Frame = 0
Query:   69 LQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
            ++++ E++ +E  KL+E+    E +  GA    GG +     E +   +AA D  SIYVG VDY  TPEE+Q HFQ CGTINRVTILCDK TG PKG+AYVEF E   +D AL +DNSL +GR IKVT KR N+ GF
Sbjct:    5 MKQRVEEMEREANKLRELQAAAEKAEQGA---QGGEQVPMETEED---KAAADARSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFAEPEFIDAALAMDNSLFRGRLIKVTPKRTNIPGF 135          
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|301097894|ref|XP_002898041.1| (polyadenylate-binding protein 2 [Phytophthora infestans T30-4] >gi|262106486|gb|EEY64538.1| polyadenylate-binding protein 2 [Phytophthora infestans T30-4])

HSP 1 Score: 139.428 bits (350), Expect = 3.215e-37
Identity = 79/176 (44.89%), Postives = 108/176 (61.36%), Query Frame = 0
Query:   34 GAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEE---KLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAA-IDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
             ++ GE E  + D E     T AA  +  E + AE++  + ++++ EE   KL EM  +VE+       +      G    A A  Q A +D+ SIY+GQVDY  TPEELQA FQ CGTINRVTILCDK TG+PKG+AY+EF    +V+ AL L++++ +GR +KVT KR NV GF
Sbjct:   16 ASLVGESEASKTDGE-----TAAAPEESTEAVDAEIEDMKRRVKEMEEEAAKLSEMQSEVESQMGKNTASTLNEMNGGAAGAAANAQPAQMDDTSIYIGQVDYGSTPEELQALFQSCGTINRVTILCDKFTGQPKGYAYIEFASHDAVESALLLNDTMFRGRQLKVTPKRQNVRGF 186          
The following BLAST results are available for this feature:
BLAST of EWM30531.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113195|gb|EWM30531.1|4.742e-176100.00polyadenylate-binding protein 2 [Nannochloropsis g... [more]
gi|636607575|ref|XP_008034922.1|8.903e-4047.13polyadenylate-binding protein 2 [Trametes versicol... [more]
gi|325186974|emb|CCA21518.1|1.702e-3947.06polyadenylatebinding protein 2 putative [Albugo la... [more]
gi|1184853974|gb|OSC99219.1|2.902e-3946.20polyadenylate-binding protein 2 [Pycnoporus coccin... [more]
gi|752353974|gb|KIO13021.1|1.820e-3850.00hypothetical protein M404DRAFT_993987 [Pisolithus ... [more]
gi|1023277785|gb|KZT72636.1|4.214e-3844.79RNA-binding domain-containing protein [Daedalea qu... [more]
gi|1026950579|ref|XP_016613147.1|1.500e-3746.15hypothetical protein SPPG_00782 [Spizellomyces pun... [more]
gi|751742785|gb|KIM91059.1|1.976e-3753.24hypothetical protein PILCRDRAFT_162667 [Piloderma ... [more]
gi|597984431|ref|XP_007364279.1|2.093e-3752.55RNA-binding domain-containing protein, partial [Di... [more]
gi|301097894|ref|XP_002898041.1|3.215e-3744.89polyadenylate-binding protein 2 [Phytophthora infe... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna203rna203Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications