EWM30531.1, cds203 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|585113195|gb|EWM30531.1| (polyadenylate-binding protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 492.656 bits (1267), Expect = 4.742e-176 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query: 1 MSAEAQLAAGVEEQGGGEEEEEYYEEEEDPGMDGAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGFFRGRGGGRGRARGGFRGGYGGGYGYHRPRGRGRGRGRYHPYY 247
MSAEAQLAAGVEEQGGGEEEEEYYEEEEDPGMDGAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGFFRGRGGGRGRARGGFRGGYGGGYGYHRPRGRGRGRGRYHPYY
Sbjct: 1 MSAEAQLAAGVEEQGGGEEEEEYYEEEEDPGMDGAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGFFRGRGGGRGRARGGFRGGYGGGYGYHRPRGRGRGRGRYHPYY 247
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|636607575|ref|XP_008034922.1| (polyadenylate-binding protein 2 [Trametes versicolor FP-101664 SS1] >gi|392568671|gb|EIW61845.1| polyadenylate-binding protein 2 [Trametes versicolor FP-101664 SS1]) HSP 1 Score: 145.206 bits (365), Expect = 8.903e-40 Identity = 82/174 (47.13%), Postives = 99/174 (56.90%), Query Frame = 0
Query: 32 MDGAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
+D P +E DN A DDPE L ++++ E++ +E KL+E+ A A A G +AA D SIYVG VDY TPEE+Q HFQ CGTINRVTILCDK TG PKG+AYVEF E VD AL +DNSL +GR IKVT KR N+ GF
Sbjct: 4 VDATTPTLNEDTVIDN---------AEEDDPEILL--MKQRVEEMEREATKLREL-------QAAAEKAERSTPTGDQPMETEEEKAATDSRSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFSETEHVDAALSMDNSLFRGRLIKVTAKRTNIPGF 159
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|325186974|emb|CCA21518.1| (polyadenylatebinding protein 2 putative [Albugo laibachii Nc14]) HSP 1 Score: 145.976 bits (367), Expect = 1.702e-39 Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 0
Query: 68 ELQRQQEKIRQEEEKLKEMMKDVE---------------ASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
+++R+ +++ +E KL EM VE AS++G+ G A G + N A+D++S+YVGQVDY TPEELQA FQ CGTINRVTILCDK TG+PKG+AY+EF K +V+ AL L++++ +GR +KVT KR NV GF
Sbjct: 41 DMKRRVKEMEEEAAKLSEMQSQVESQMGKNTASSLNELNASASGSSGHAIGSNSNTSTNPNGGSSTALDDSSVYVGQVDYGSTPEELQALFQSCGTINRVTILCDKFTGQPKGYAYIEFASKDAVESALLLNDTMFRGRQLKVTPKRQNVRGF 193
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|1184853974|gb|OSC99219.1| (polyadenylate-binding protein 2 [Pycnoporus coccineus BRFM310]) HSP 1 Score: 144.05 bits (362), Expect = 2.902e-39 Identity = 79/171 (46.20%), Postives = 101/171 (59.06%), Query Frame = 0
Query: 38 GEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMM---KDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
+ E N+ + + DDPE L ++++ E++ +E KL+E+ + E S+ A EE +AA+D SIYVG VDY TPEE+Q HFQ CGTINRVTILCDK TG PKG+AYVEF E VD AL +DNSL +GR IKVT KR N+ GF
Sbjct: 2 ADTESTNPTNDASETVIDNSEDDDPEILL--MKQRVEEMEREANKLRELQAAAEKAERSTPSAEQVPMETEEE---------KAAVDSRSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFSEPEHVDAALAMDNSLFRGRLIKVTPKRTNIPGF 161
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|752353974|gb|KIO13021.1| (hypothetical protein M404DRAFT_993987 [Pisolithus tinctorius Marx 270]) HSP 1 Score: 142.124 bits (357), Expect = 1.820e-38 Identity = 79/158 (50.00%), Postives = 100/158 (63.29%), Query Frame = 0
Query: 51 DDGTGAATHDDPEHLAAELQRQQ---EKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
+D T D E + E+Q + E++ +E +KL+E+ E+ S+GA GG ++G E +A D SI+VG VDY TPEE+Q HFQ CGTINRVTILCDK TG PKG+AYVEF E +D AL +DNSL +GR IKVT KR NV GF
Sbjct: 12 NDSTDPTFDDAEEAESKEIQLMKLRVEEMEREAKKLRELQAAAESVSSGA----GGSDQGVPMETEE-DRAIADSRSIFVGNVDYGATPEEIQGHFQACGTINRVTILCDKFTGHPKGYAYVEFAEPDFIDAALAMDNSLFRGRLIKVTAKRTNVPGF 164
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|1023277785|gb|KZT72636.1| (RNA-binding domain-containing protein [Daedalea quercina L-15889]) HSP 1 Score: 142.124 bits (357), Expect = 4.214e-38 Identity = 86/192 (44.79%), Postives = 114/192 (59.38%), Query Frame = 0
Query: 62 PEHLAAEL-----QRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAA-------GQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF-FRGRGGGRGRARGGFRGGYGGGYGYHRPRGRGRGR 240
P H A ++ + + ++I +++++EM + EA+ + AA E A+ EA+ + +AA D SI+VG VDY TPEE+QAHFQ CG INRVTILCDK TG PKG+AYVEF E++ V+ AL +DNSL +GR IKVT KR N+ GF GG G G GY +R RGR R R
Sbjct: 9 PSHTADQIVDDGEEEESKEILLMKQRVEEMER--EANKLRELQAAAEKAERASSEADTSVPMETEDDKAAADTRSIFVGNVDYSATPEEIQAHFQACGVINRVTILCDKFTGHPKGYAYVEFAEESHVEAALAMDNSLFRGRLIKVTAKRTNIPGFNRGRGRGGYRGGYRGGYRGGSPGYAPYRARGRTRAR 198
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|1026950579|ref|XP_016613147.1| (hypothetical protein SPPG_00782 [Spizellomyces punctatus DAOM BR117] >gi|907099872|gb|KND05108.1| hypothetical protein SPPG_00782 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 139.813 bits (351), Expect = 1.500e-37 Identity = 72/156 (46.15%), Postives = 97/156 (62.18%), Query Frame = 0
Query: 50 QDDGTGAATHDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
+D G G T +D + ++++ +++ E +KL+EM VE + NGE +A + +D SIY+G VDY TPEE+QAHFQ CGTINRVTILCDK TG PKG+AYVEF + + V AL L++SL KGR IKV+ KR N+ G
Sbjct: 16 EDAGLGGGTEEDMDQEVEAMKQRIKEMEAEAQKLREMQAQVEKE----------MHMSTNGEGDADSKEEVDSRSIYIGNVDYSSTPEEIQAHFQSCGTINRVTILCDKWTGHPKGYAYVEFADPSIVANALVLNDSLFKGRLIKVSAKRTNLPGM 161
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|751742785|gb|KIM91059.1| (hypothetical protein PILCRDRAFT_162667 [Piloderma croceum F 1598]) HSP 1 Score: 138.658 bits (348), Expect = 1.976e-37 Identity = 74/139 (53.24%), Postives = 95/139 (68.35%), Query Frame = 0
Query: 69 LQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAG--QAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
++++ E++ +E KL+E+ +A++A + GG EGA GE ++A D S++VG VDY TPEE+Q HFQ CGTINRVTILCDK TG PKGFAYVEF E +D AL +DNSL +GR IKVT KR NV GF
Sbjct: 3 MKQRVEEMEREANKLREL----QAAAAESNNVEGG--EGAAGEPMETDEDKSAADSRSVFVGNVDYGATPEEIQGHFQACGTINRVTILCDKFTGHPKGFAYVEFAEPEHIDAALAMDNSLFRGRLIKVTAKRTNVPGF 135
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|597984431|ref|XP_007364279.1| (RNA-binding domain-containing protein, partial [Dichomitus squalens LYAD-421 SS1] >gi|395330550|gb|EJF62933.1| RNA-binding domain-containing protein, partial [Dichomitus squalens LYAD-421 SS1]) HSP 1 Score: 138.272 bits (347), Expect = 2.093e-37 Identity = 72/137 (52.55%), Postives = 91/137 (66.42%), Query Frame = 0
Query: 69 LQRQQEKIRQEEEKLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAAIDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
++++ E++ +E KL+E+ E + GA GG + E + +AA D SIYVG VDY TPEE+Q HFQ CGTINRVTILCDK TG PKG+AYVEF E +D AL +DNSL +GR IKVT KR N+ GF
Sbjct: 5 MKQRVEEMEREANKLRELQAAAEKAEQGA---QGGEQVPMETEED---KAAADARSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFAEPEFIDAALAMDNSLFRGRLIKVTPKRTNIPGF 135
BLAST of EWM30531.1 vs. NCBI_GenBank
Match: gi|301097894|ref|XP_002898041.1| (polyadenylate-binding protein 2 [Phytophthora infestans T30-4] >gi|262106486|gb|EEY64538.1| polyadenylate-binding protein 2 [Phytophthora infestans T30-4]) HSP 1 Score: 139.428 bits (350), Expect = 3.215e-37 Identity = 79/176 (44.89%), Postives = 108/176 (61.36%), Query Frame = 0
Query: 34 GAVPGEDEQREGDNEGQDDGTGAATHDDPEHLAAELQRQQEKIRQEEE---KLKEMMKDVEASSAGAVGAAGGVEEGANGEANAAGQAA-IDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGF 205
++ GE E + D E T AA + E + AE++ + ++++ EE KL EM +VE+ + G A A Q A +D+ SIY+GQVDY TPEELQA FQ CGTINRVTILCDK TG+PKG+AY+EF +V+ AL L++++ +GR +KVT KR NV GF
Sbjct: 16 ASLVGESEASKTDGE-----TAAAPEESTEAVDAEIEDMKRRVKEMEEEAAKLSEMQSEVESQMGKNTASTLNEMNGGAAGAAANAQPAQMDDTSIYIGQVDYGSTPEELQALFQSCGTINRVTILCDKFTGQPKGYAYIEFASHDAVESALLLNDTMFRGRQLKVTPKRQNVRGF 186 The following BLAST results are available for this feature:
BLAST of EWM30531.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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