rna2027, rna2027 (mRNA) Nannochloropsis gaditana

Overview
Namerna2027
Unique Namerna2027
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length405
Alignment locationCM002458.1:726004..726748 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100177g8.1004.mrna
Orig protein idgnl|cribi|Naga_100177g8.1004
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:726004..726748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g8gene1938Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2027rna2027-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28647.1cds2019Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2027 ID=rna2027|Name=rna2027|organism=Nannochloropsis gaditana|type=mRNA|length=405bp
ATGCCTCAGCGGGGCATGAAACGCGATCGCAAGCTTGGCAAAACCTTATG
TAATGCCTCCAGAGCAGCCTTATCTTCAATGCTCTCCTTGTCTACAGCAT
CTCTAAGCTTGCCAACAGGCACATCGGCCATTTTACTGCCAAGTTCGAGC
CCAATCTCCTCCAGCACTTGGTTGACGACGGACTCTGCTTCTTCTTCCAC
TCCATCTCCGTCGAACTGTAATATTAAAATTGTTGATCGTAGATTGAAAT
CCCGTATTGATGTCGTTACATCTTGCACCCTCAAAGATGCTTCATGCATA
ATGAACTTGAGTTTTGCGACGTGTATCGAAATATTCTACATCTTCAATAA
AGAATTGGAATTTAAATGTCCTGACACTGATATCAAGTCTGCACTACTAA
AATGA
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protein sequence of rna2027

>rna2027-protein ID=rna2027-protein|Name=rna2027|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MHLTPLNEDEKSELAWLHWKSEITRLSKRSRRLRSGAEFDREIDRINERE
GSGTISTEGREYAGRRVERKDQKSLRKEFAPPSALGMSVWRHCGTRMTAF
GGSTSALPGSAQSVGVSPDMPIYPCTCYSLVRATRPGKETTSLRNGEPVE
ETRNGGGAAFFEVSNVTVLNVLCQHVPIWSVSGSCYVPWDEGDVECGWSM
EKEARGTPTDCKALMT
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mRNA from alignment at CM002458.1:726004..726748+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2027 ID=rna2027|Name=rna2027|organism=Nannochloropsis gaditana|type=mRNA|length=745bp|location=Sequence derived from alignment at CM002458.1:726004..726748+ (Nannochloropsis gaditana)
ATGCATCTTACGCCGTTAAACGAAGATGAGAAATCTGAGCTTGCATGGCT
TCATTGTCACATGAAGAGAAAAAACAGTAGAAACtaaaaagagaaaggaa
agggaagagcgaAATTACGCGATTGAGCAAACGCAGTCGTCGTCTCCGAT
CTGGTGCGGAGTTTGACAGGGAGATTGACCGGATCAATGAGCGGGAGGGC
TCAGGCACGATCTCcacagagggaagggagtaTGCAGGACGGAGAGTGGA
GAGAAAAGACCAAAAGAGTTTGCGGAAAGAATTTGCGCCACCGAGCGCTC
TTGGGATGTCCGTGTGGAGGCACTGTGGGACCAGGATGACCGCTTTTGGA
GGGTCGACTAGCGCCCTGCCTGGGAGCGCTCAGTCAGTAGGTGTGTCACC
AGACATGCCGATCTATCCTTGTACATGCTATTCCTTAGTTAGGGCGACAA
GGCCCGGAAAAGAGACAACAAGCCTACGGAACGGTGAACCCGTAGAGGAG
ACCAGGAATGGAGGGTCCGGTAGAGTGGCGGGCAGCCATTTGACGAGCAA
GGGAGTTTGAGAGGAGCCGCATTTTTTGAGGTTTCGAATGTCACCGTGTT
GAACGTGCTTTGTCAACATGTGCCCATCTGGAGTGTTTCGGGGAGTTGTT
ATGTGCCGTGGGATGAGGGCGACGTGGAATGTGGATGGAgcatggaaaaa
gaagcaagaggaaCTCCGACCGACTGTAAAGCGTTGATGACTTAA
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Coding sequence (CDS) from alignment at CM002458.1:726004..726748+

>rna2027 ID=rna2027|Name=rna2027|organism=Nannochloropsis gaditana|type=CDS|length=1953bp|location=Sequence derived from alignment at CM002458.1:726004..726748+ (Nannochloropsis gaditana)
ATGCATCTTACGCCGTTAAACGAAGATGAGAAATCTGAGCTTGCATGGCT
TCATTggaagagcgaAATTACGCGATTGAGCAAACGCAGTCGTCGTCTCC
GATCTGGTGCGGAGTTTGACAGGGAGATTGACCGGATCAATGAGCGGGAG
GGCTCAGGCACGATCTCcacagagggaagggagtaTGCAGGACGGAGAGT
GGAGAGAAAAGACCAAAAGAGTTTGCGGAAAGAATTTGCGCCACCGAGCG
CTCTTGGGATGTCCGTGTGGAGGCACTGTGGGACCAGGATGACCGCTTTT
GGAGGGTCGACTAGCGCCCTGCCTGGGAGCGCTCAGTCAGTAGGTGTGTC
ACCAGACATGCCGATCTATCCTTGTACATGCTATTCCTTAGTTAGGGCGA
CAAGGCCCGGAAAAGAGACAACAAGCCTACGGAACGGTGAACCCGTAGAG
GAGACCAGGAATGGAGGAGGAGCCGCATTTTTTGAGGTTTCGAATGTCAC
CGTGTTGAACGTGCTTTGTCAACATGTGCCCATCTGGAGTGTTTCGGGGA
GTTGTTATGTGCCGTGGGATGAGGGCGACGTGGAATGTGGATGGAgcatg
gaaaaagaagcaagaggaaCTCCGACCGACTGTAAAGCGTTGATGACTTA
AATGCATCTTACGCCGTTAAACGAAGATGAGAAATCTGAGCTTGCATGGC
TTCATTggaagagcgaAATTACGCGATTGAGCAAACGCAGTCGTCGTCTC
CGATCTGGTGCGGAGTTTGACAGGGAGATTGACCGGATCAATGAGCGGGA
GGGCTCAGGCACGATCTCcacagagggaagggagtaTGCAGGACGGAGAG
TGGAGAGAAAAGACCAAAAGAGTTTGCGGAAAGAATTTGCGCCACCGAGC
GCTCTTGGGATGTCCGTGTGGAGGCACTGTGGGACCAGGATGACCGCTTT
TGGAGGGTCGACTAGCGCCCTGCCTGGGAGCGCTCAGTCAGTAGGTGTGT
CACCAGACATGCCGATCTATCCTTGTACATGCTATTCCTTAGTTAGGGCG
ACAAGGCCCGGAAAAGAGACAACAAGCCTACGGAACGGTGAACCCGTAGA
GGAGACCAGGAATGGAGGAGGAGCCGCATTTTTTGAGGTTTCGAATGTCA
CCGTGTTGAACGTGCTTTGTCAACATGTGCCCATCTGGAGTGTTTCGGGG
AGTTGTTATGTGCCGTGGGATGAGGGCGACGTGGAATGTGGATGGAgcat
ggaaaaagaagcaagaggaaCTCCGACCGACTGTAAAGCGTTGATGACTT
AAATGCATCTTACGCCGTTAAACGAAGATGAGAAATCTGAGCTTGCATGG
CTTCATTggaagagcgaAATTACGCGATTGAGCAAACGCAGTCGTCGTCT
CCGATCTGGTGCGGAGTTTGACAGGGAGATTGACCGGATCAATGAGCGGG
AGGGCTCAGGCACGATCTCcacagagggaagggagtaTGCAGGACGGAGA
GTGGAGAGAAAAGACCAAAAGAGTTTGCGGAAAGAATTTGCGCCACCGAG
CGCTCTTGGGATGTCCGTGTGGAGGCACTGTGGGACCAGGATGACCGCTT
TTGGAGGGTCGACTAGCGCCCTGCCTGGGAGCGCTCAGTCAGTAGGTGTG
TCACCAGACATGCCGATCTATCCTTGTACATGCTATTCCTTAGTTAGGGC
GACAAGGCCCGGAAAAGAGACAACAAGCCTACGGAACGGTGAACCCGTAG
AGGAGACCAGGAATGGAGGAGGAGCCGCATTTTTTGAGGTTTCGAATGTC
ACCGTGTTGAACGTGCTTTGTCAACATGTGCCCATCTGGAGTGTTTCGGG
GAGTTGTTATGTGCCGTGGGATGAGGGCGACGTGGAATGTGGATGGAgca
tggaaaaagaagcaagaggaaCTCCGACCGACTGTAAAGCGTTGATGACT
TAA
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Synonyms
Publications