rna2024, rna2024 (mRNA) Nannochloropsis gaditana

Overview
Namerna2024
Unique Namerna2024
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1077
Alignment locationCM002458.1:720575..721429 +

Link to JBrowse

Properties
Property NameValue
ProductRNAse P, Rpr2/Rpp21 subunit
Orig transcript idgnl|cribi|Naga_100177g4.1013.mrna
Orig protein idgnl|cribi|Naga_100177g4.1013
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:720575..721429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g4gene1935Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2024rna2024-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28656.1cds2016Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2024 ID=rna2024|Name=rna2024|organism=Nannochloropsis gaditana|type=mRNA|length=1077bp
ATGCCTATGGCTCGTTTTAGCCGGCTTGCACGGGAGCTGGAGCTGCTTCG
AAATGACCCTCCCCCAGGCGTGGCGGCCTGGCCCGTGGATGAAGCAAATT
TGTCCCGTTTTCATGCCAGCATCCGAGGGCCAGAGTCAACGCCGTACGCC
GCCGGACTCTTCAGGCTCGAGCTCGAGGTCTCCCCGCGCTACCCCTTTGA
GCCGCCCACCGTCCGCTTCTTGACCCCTGTCTTCCACCCAAACGTGGACG
ACAGAGGCCGCATCTGCCTCGATTCATTAAAGGCCCAGCCCCAGGGGGCA
TGGACGCCATCCTTGAACATCCCCACGCTCCTGACGACCCTTCGTCTGCT
CCTCGCCCACCCGAACGCCGACGACGGCCTAGCGCCTGAACCCACCGCTC
TCTATCAGAGAGACTTGCGTGGCTTCGAACAGCGTGCACGTGAGCACACG
GCCCAATATGCGATGGGCGAGGCAACGTCCCCCGGGGAGGCATTGGCGGC
CTGCCTACAGGGGGAAGCGGAGGAGAGGGACGGGGGGGGGGGTCGCGCCT
CATGTGAGCAAGGGGCTGTCGAAGGTGAGGGGAGCGTGCGGAGAGGAAGG
GAGGAAAAGGAGGACGCGGATAGCCAGATGCACGTCGCGGGCGAAAACGA
GGACTCAGCCTCCTCCGCGGGTGGCGGGCCGGCGGATGCGGGGGTATCTG
GCAGCGTTGGACAGCTGCCATTTTCCTTGTCCACTAGCCCGGTGCAACAA
CAGCAGCAGCAACAACGGCAGCAGCAGCAACAAGAACGACAGGAACAGCC
TGGCGCGCGTTTGGGAGAGCCGCAAAAATGTAGCGAGGAGGATGAGGGAG
GAGAGGAACGGGGCTGGGACAGTGACGTGAGCATATGCGGGGATGGTGCC
TCCTCCTCCTCCTCCTGCACCCTTTTCGACTCCGAAGTCGAAGATATTGA
GGAAAGACACGTTCGTGAGGGCCGAGAGTGGGGGATAGTACAGGCTCAGG
CGCGGGGGGAGGCTTTCTTGACGAGCGGTGAGGGCATGCCGCCGCGGAAG
CGCGCGCGTGCTAGTTGGACATCGTAG
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protein sequence of rna2024

>rna2024-protein ID=rna2024-protein|Name=rna2024|organism=Nannochloropsis gaditana|type=polypeptide|length=284bp
MDPATIRISGAFSRLLESFRVPSSALAPRLSISAQRGKPASDNVEPALLL
RLDYLWKQALSHLPTNQTYSRALSRKFIRLRDLFSAHEVLHPHLSDCLCP
VCGVILFPGVTARTRVQHGAKRSQANARRKWMRLSNQNSDPRSGYAANVP
CSLKNRVTYACMLCNRGSRTMDGATRRSEDKRSTLGEARKAETSLLCPGA
SGELSSSSKQQVPDTTEEEDFIPLQSESFRQLQKHQKTLAPPRLLLDPKP
RKRKRQEEPSRDGQKSVSRSLGQVRGFLASFQKG
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mRNA from alignment at CM002458.1:720575..721429+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2024 ID=rna2024|Name=rna2024|organism=Nannochloropsis gaditana|type=mRNA|length=855bp|location=Sequence derived from alignment at CM002458.1:720575..721429+ (Nannochloropsis gaditana)
ATGGATCCGGCGACGATAAGGATTTCCGGTGCATTTAGTCGCCTTCTCGA
GAGCTTCAGAGTGCCTTCGTCTGCACTTGCTCCGAGGCTGTCGATTTCCG
CTCAGCGGGGCAAGCCCGCCTCTGACAACGTCGAGCCGGCCCTGCTCTTA
CGCCTCGATTACCTTTGGAAACAGGCCTTAAGTCACCTTCCCACCAATCA
AACATATTCACGTGCGTTGTCTCGAAAATTTATTCGCCTGCGCGACTTGT
TCTCCGCTCATGAAGTCCTACATCCACACTTGTCCGACTGCCTATGTCCT
GTGTGCGGGGTGATCCTTTTTCCTGGTGTCACGGCTCGGACCCGCGTCCA
ACATGGGGCCAAGAGATCTCAGGCCAATGCCCGCCGTAAGTGGATGCGCC
TTTCTAATCAAAACAGTGACCCGAGGAGTGGATATGCGGCCAACGTGCCC
TGTTCGCTGAAGAACCGTGTGACCTACGCCTGTATGCTCTGCAATAGGGG
TTCGCGCACGATGGACGGGGCGACAAGGCGGTCGGAAGATAAGCGGAGCA
CATTGGGTGAGGCAAGAAAGGCTGAGACGAGCCTTCTTTGCCCTGGTGCC
TCTGGGGAGCTCTCATCGTCTTCAAAGCAGCAAGTTCCAGAcacgacgga
ggaggaggacttcaTTCCTCTGCAATCGGAAAGCTTCAGACAACTTCAAA
AGCACCAGAAAACTTTAGCCCCGCCACGCTTGCTCCTGGACCCAAAGCCA
CGCAAACGAAAGCGCCAGGAAGAACCAAGCCGGGATGGTCAGAAGTCGGT
GTCTCGGTCTCTAGGTCAGGTACGAGGATTTCTCGCGTCCTTCCAGAAAG
GATGA
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Coding sequence (CDS) from alignment at CM002458.1:720575..721429+

>rna2024 ID=rna2024|Name=rna2024|organism=Nannochloropsis gaditana|type=CDS|length=855bp|location=Sequence derived from alignment at CM002458.1:720575..721429+ (Nannochloropsis gaditana)
ATGGATCCGGCGACGATAAGGATTTCCGGTGCATTTAGTCGCCTTCTCGA
GAGCTTCAGAGTGCCTTCGTCTGCACTTGCTCCGAGGCTGTCGATTTCCG
CTCAGCGGGGCAAGCCCGCCTCTGACAACGTCGAGCCGGCCCTGCTCTTA
CGCCTCGATTACCTTTGGAAACAGGCCTTAAGTCACCTTCCCACCAATCA
AACATATTCACGTGCGTTGTCTCGAAAATTTATTCGCCTGCGCGACTTGT
TCTCCGCTCATGAAGTCCTACATCCACACTTGTCCGACTGCCTATGTCCT
GTGTGCGGGGTGATCCTTTTTCCTGGTGTCACGGCTCGGACCCGCGTCCA
ACATGGGGCCAAGAGATCTCAGGCCAATGCCCGCCGTAAGTGGATGCGCC
TTTCTAATCAAAACAGTGACCCGAGGAGTGGATATGCGGCCAACGTGCCC
TGTTCGCTGAAGAACCGTGTGACCTACGCCTGTATGCTCTGCAATAGGGG
TTCGCGCACGATGGACGGGGCGACAAGGCGGTCGGAAGATAAGCGGAGCA
CATTGGGTGAGGCAAGAAAGGCTGAGACGAGCCTTCTTTGCCCTGGTGCC
TCTGGGGAGCTCTCATCGTCTTCAAAGCAGCAAGTTCCAGAcacgacgga
ggaggaggacttcaTTCCTCTGCAATCGGAAAGCTTCAGACAACTTCAAA
AGCACCAGAAAACTTTAGCCCCGCCACGCTTGCTCCTGGACCCAAAGCCA
CGCAAACGAAAGCGCCAGGAAGAACCAAGCCGGGATGGTCAGAAGTCGGT
GTCTCGGTCTCTAGGTCAGGTACGAGGATTTCTCGCGTCCTTCCAGAAAG
GATGA
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Synonyms
Publications