EWM28656.1, cds2016 (CDS) Nannochloropsis gaditana

Overview
NameEWM28656.1
Unique Namecds2016
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:720575..721429 +

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Properties
Property NameValue
Protein idEWM28656.1
ProductRNAse P, Rpr2/Rpp21 subunit
Orig transcript idgnl|cribi|Naga_100177g4.1013.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:720575..721429 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007175Rpr2
Homology
[Close]
BLAST of EWM28656.1 vs. NCBI_GenBank
Match: gi|553195514|ref|XP_005856161.1| (hypothetical protein NGA_2086900 [Nannochloropsis gaditana CCMP526] >gi|422292899|gb|EKU20200.1| hypothetical protein NGA_2086900 [Nannochloropsis gaditana CCMP526] >gi|585111077|gb|EWM28656.1| RNAse P, Rpr2/Rpp21 subunit [Nannochloropsis gaditana])

HSP 1 Score: 579.711 bits (1493), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0 
Query:    1 MDPATIRISGAFSRLLESFRVPSSALAPRLSISAQRGKPASDNVEPALLLRLDYLWKQALSHLPTNQTYSRALSRKFIRLRDLFSAHEVLHPHLSDCLCPVCGVILFPGVTARTRVQHGAKRSQANARRKWMRLSNQNSDPRSGYAANVPCSLKNRVTYACMLCNRGSRTMDGATRRSEDKRSTLGEARKAETSLLCPGASGELSSSSKQQVPDTTEEEDFIPLQSESFRQLQKHQKTLAPPRLLLDPKPRKRKRQEEPSRDGQKSVSRSLGQVRGFLASFQKG 284
            MDPATIRISGAFSRLLESFRVPSSALAPRLSISAQRGKPASDNVEPALLLRLDYLWKQALSHLPTNQTYSRALSRKFIRLRDLFSAHEVLHPHLSDCLCPVCGVILFPGVTARTRVQHGAKRSQANARRKWMRLSNQNSDPRSGYAANVPCSLKNRVTYACMLCNRGSRTMDGATRRSEDKRSTLGEARKAETSLLCPGASGELSSSSKQQVPDTTEEEDFIPLQSESFRQLQKHQKTLAPPRLLLDPKPRKRKRQEEPSRDGQKSVSRSLGQVRGFLASFQKG
Sbjct:    1 MDPATIRISGAFSRLLESFRVPSSALAPRLSISAQRGKPASDNVEPALLLRLDYLWKQALSHLPTNQTYSRALSRKFIRLRDLFSAHEVLHPHLSDCLCPVCGVILFPGVTARTRVQHGAKRSQANARRKWMRLSNQNSDPRSGYAANVPCSLKNRVTYACMLCNRGSRTMDGATRRSEDKRSTLGEARKAETSLLCPGASGELSSSSKQQVPDTTEEEDFIPLQSESFRQLQKHQKTLAPPRLLLDPKPRKRKRQEEPSRDGQKSVSRSLGQVRGFLASFQKG 284
The following BLAST results are available for this feature:
BLAST of EWM28656.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553195514|ref|XP_005856161.1|0.000e+0100.00hypothetical protein NGA_2086900 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2024rna2024Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications