rna2022, rna2022 (mRNA) Nannochloropsis gaditana

Overview
Namerna2022
Unique Namerna2022
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length759
Alignment locationCM002458.1:717824..718682 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100177g2.1000.mrna
Orig protein idgnl|cribi|Naga_100177g2.1000
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:717824..718682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g2gene1933Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2022rna2022-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28643.1cds2014Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2022 ID=rna2022|Name=rna2022|organism=Nannochloropsis gaditana|type=mRNA|length=759bp
AATGCGGCGCCTTGTACTGACCAATCGGACCTTGGCGGGGCACACAGCGA
GGTCTCGACGCGTGAGAGAGCCGTAGCTTTGCTTCACAGCATGACCGTGG
GCGGCTCGCCTTTCAACAGTAACAGCAGCGACTTGTTGTACGCACCATCA
TCTCCAACCCTGTCTTCGTCGCCAGGATCGTCCTCCTCGTGCAGGCCGCC
TCTGCTTTCTCCGCCAACGGCTTCGACGCAGTTCTCGGTCGGGTCTGGCG
AAGAGGTCATGCCAGGCAAGAGAAAGCCGCAGTGGGAAGGCACTCTGCAT
GCTTTGGCCGAGATGGCGCGGATGGACGGACATGGCAACGAGGATAACCT
GGGTGCTAGCGTAACATGTACTCGCAGCTTGCTTACGCCCTCAAGCATGG
CCTCGCCGCGCTCAGTAGGCTTGATCGGCAGCCCGTCTTCCTCGTCCCTC
CCTGGACCTTTGCTGTTGTCGCCGGGTTCGCCGGTGATGGCGCTCGGACC
CGGAAGTCCTCTGCTCAAAAGCGACAGCGGCGGCGGCGGCGCGCATCTTG
TTTTGAAGCACAGCACAGAAGGGGAAGGTGCCGAGATGAAGAAGAATGAC
GACAGCAGCAGCTACAGCAGGAATCATAGCAGCGTGGATTTGGAAGGAAG
CGGTCAGTTCTCGCTTCAACCCTCGCTTCAACCCCTCTCTGTCGGGTTGG
TGGAAGCGAGCTCGTCTTCCCCCTCGGCGCCCGTGACCACACCCGGCAAT
GAGGAATAG
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protein sequence of rna2022

>rna2022-protein ID=rna2022-protein|Name=rna2022|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MTYSQRGTMKEFQINGYRKWRSFEKSNSNLKGEQCRPESALKMGRHGVVV
VYSKDGMRTLTYCLPAGSEGEAPPTPGSSLHYLYEHLRAKPAARIQWKKI
MIRLSEDTREALHGTTRTTRGNVEKEKRRMKAAEYQELRLYKVASLLGSS
LSLDSPTQRRRQVRAARGRRGAEHCRGLRQGSKIIPHLKEECPPTELTLR
LSTTGSSSFCADQRKEKANFDCQERCDKKK
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mRNA from alignment at CM002458.1:717824..718682+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2022 ID=rna2022|Name=rna2022|organism=Nannochloropsis gaditana|type=mRNA|length=859bp|location=Sequence derived from alignment at CM002458.1:717824..718682+ (Nannochloropsis gaditana)
ATGACATATTCGCAACGAGGTACAATGAAAGAATTTCAAATAAACGGCTA
TCGTAAGTGGAGGAGCTTCGAAAAGTCTAATTCGAATCTAAAGGGAGAAC
AATGTAGGCCAGAAAGTGCGCTGAAAATGGGCAGGCATGGTGTGGTCGTT
GTGTATTCGAAAGATGGCATGCGCACACTTACCTATTGCCTACCTGCTGG
GAGCGTAACGCTTCCTTAACCTGCATATACATATGGGGCGGTCAATAGTG
AAcacaggaagaaaagcacGTATAGGAAGGTGAAGCGCCTCCCACACCTG
GATCGAGTCTGCATTACCTTTACGAGCACTTGAGAGCCAAGCCTGCAGCC
AGGATCCAGTGGAAAAAGATCATGATTAGATTGTCTGAAGACACTCGGGA
AGCATTGCACGGTACGACACGAACAACGCGGGGAAACGTagagaaggaga
aacgaCGGATGAAAGCTGCGGAATATCAAGAGCTAAGGCTGTAGTTACAC
CTAGAGCTTGAAAGCTGGAGCTCTGACGAGGGGAAACGTAGCAAAGTGGC
GTCCCTGTTGGGGTCATCCCTGTCTCTCGATAGTCCGACACAGAGAAGAC
GGCAGGTGAGAGCAGCCAGAGGTAGAAGAGGGGCGGAGCACTGCCGTGGA
TTACGGCAAGGATGTCAGAGAGAGTCAAAGCTTTTTAGAGATCAAATACA
GCACGTAAAGCAAAGATTATTCCTCACTTAAAGGAAGAGTGCCCGCCTAC
AGAGCTCACGTTAAGGTTAAGCACGACCGGCAGCAGCAGTTTTTGCGCCG
AccagaggaaagaaaaggccaATTTCGATTGTCAAGAGCGTTGTGACAAA
AAGAAGTGA
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Coding sequence (CDS) from alignment at CM002458.1:717824..718682+

>rna2022 ID=rna2022|Name=rna2022|organism=Nannochloropsis gaditana|type=CDS|length=2772bp|location=Sequence derived from alignment at CM002458.1:717824..718682+ (Nannochloropsis gaditana)
ATGACATATTCGCAACGAGGTACAATGAAAGAATTTCAAATAAACGGCTA
TCGTAAGTGGAGGAGCTTCGAAAAGTCTAATTCGAATCTAAAGGGAGAAC
AATGTAGGCCAGAAAGTGCGCTGAAAATGGGCAGGCATGGTGTGGTCGTT
GTGTATTCGAAAGATGGCATGCGCACACTTACCTATTGCCTACCTGCTGG
GAGCGAAGGTGAAGCGCCTCCCACACCTGGATCGAGTCTGCATTACCTTT
ACGAGCACTTGAGAGCCAAGCCTGCAGCCAGGATCCAGTGGAAAAAGATC
ATGATTAGATTGTCTGAAGACACTCGGGAAGCATTGCACGGTACGACACG
AACAACGCGGGGAAACGTagagaaggagaaacgaCGGATGAAAGCTGCGG
AATATCAAGAGCTAAGGCTGTACAAAGTGGCGTCCCTGTTGGGGTCATCC
CTGTCTCTCGATAGTCCGACACAGAGAAGACGGCAGGTGAGAGCAGCCAG
AGGTAGAAGAGGGGCGGAGCACTGCCGTGGATTACGGCAAGGATCAAAGA
TTATTCCTCACTTAAAGGAAGAGTGCCCGCCTACAGAGCTCACGTTAAGG
TTAAGCACGACCGGCAGCAGCAGTTTTTGCGCCGAccagaggaaagaaaa
ggccaATTTCGATTGTCAAGAGCGTTGTGACAAAAAGAAGTGAATGACAT
ATTCGCAACGAGGTACAATGAAAGAATTTCAAATAAACGGCTATCGTAAG
TGGAGGAGCTTCGAAAAGTCTAATTCGAATCTAAAGGGAGAACAATGTAG
GCCAGAAAGTGCGCTGAAAATGGGCAGGCATGGTGTGGTCGTTGTGTATT
CGAAAGATGGCATGCGCACACTTACCTATTGCCTACCTGCTGGGAGCGAA
GGTGAAGCGCCTCCCACACCTGGATCGAGTCTGCATTACCTTTACGAGCA
CTTGAGAGCCAAGCCTGCAGCCAGGATCCAGTGGAAAAAGATCATGATTA
GATTGTCTGAAGACACTCGGGAAGCATTGCACGGTACGACACGAACAACG
CGGGGAAACGTagagaaggagaaacgaCGGATGAAAGCTGCGGAATATCA
AGAGCTAAGGCTGTACAAAGTGGCGTCCCTGTTGGGGTCATCCCTGTCTC
TCGATAGTCCGACACAGAGAAGACGGCAGGTGAGAGCAGCCAGAGGTAGA
AGAGGGGCGGAGCACTGCCGTGGATTACGGCAAGGATCAAAGATTATTCC
TCACTTAAAGGAAGAGTGCCCGCCTACAGAGCTCACGTTAAGGTTAAGCA
CGACCGGCAGCAGCAGTTTTTGCGCCGAccagaggaaagaaaaggccaAT
TTCGATTGTCAAGAGCGTTGTGACAAAAAGAAGTGAATGACATATTCGCA
ACGAGGTACAATGAAAGAATTTCAAATAAACGGCTATCGTAAGTGGAGGA
GCTTCGAAAAGTCTAATTCGAATCTAAAGGGAGAACAATGTAGGCCAGAA
AGTGCGCTGAAAATGGGCAGGCATGGTGTGGTCGTTGTGTATTCGAAAGA
TGGCATGCGCACACTTACCTATTGCCTACCTGCTGGGAGCGAAGGTGAAG
CGCCTCCCACACCTGGATCGAGTCTGCATTACCTTTACGAGCACTTGAGA
GCCAAGCCTGCAGCCAGGATCCAGTGGAAAAAGATCATGATTAGATTGTC
TGAAGACACTCGGGAAGCATTGCACGGTACGACACGAACAACGCGGGGAA
ACGTagagaaggagaaacgaCGGATGAAAGCTGCGGAATATCAAGAGCTA
AGGCTGTACAAAGTGGCGTCCCTGTTGGGGTCATCCCTGTCTCTCGATAG
TCCGACACAGAGAAGACGGCAGGTGAGAGCAGCCAGAGGTAGAAGAGGGG
CGGAGCACTGCCGTGGATTACGGCAAGGATCAAAGATTATTCCTCACTTA
AAGGAAGAGTGCCCGCCTACAGAGCTCACGTTAAGGTTAAGCACGACCGG
CAGCAGCAGTTTTTGCGCCGAccagaggaaagaaaaggccaATTTCGATT
GTCAAGAGCGTTGTGACAAAAAGAAGTGAATGACATATTCGCAACGAGGT
ACAATGAAAGAATTTCAAATAAACGGCTATCGTAAGTGGAGGAGCTTCGA
AAAGTCTAATTCGAATCTAAAGGGAGAACAATGTAGGCCAGAAAGTGCGC
TGAAAATGGGCAGGCATGGTGTGGTCGTTGTGTATTCGAAAGATGGCATG
CGCACACTTACCTATTGCCTACCTGCTGGGAGCGAAGGTGAAGCGCCTCC
CACACCTGGATCGAGTCTGCATTACCTTTACGAGCACTTGAGAGCCAAGC
CTGCAGCCAGGATCCAGTGGAAAAAGATCATGATTAGATTGTCTGAAGAC
ACTCGGGAAGCATTGCACGGTACGACACGAACAACGCGGGGAAACGTaga
gaaggagaaacgaCGGATGAAAGCTGCGGAATATCAAGAGCTAAGGCTGT
ACAAAGTGGCGTCCCTGTTGGGGTCATCCCTGTCTCTCGATAGTCCGACA
CAGAGAAGACGGCAGGTGAGAGCAGCCAGAGGTAGAAGAGGGGCGGAGCA
CTGCCGTGGATTACGGCAAGGATCAAAGATTATTCCTCACTTAAAGGAAG
AGTGCCCGCCTACAGAGCTCACGTTAAGGTTAAGCACGACCGGCAGCAGC
AGTTTTTGCGCCGAccagaggaaagaaaaggccaATTTCGATTGTCAAGA
GCGTTGTGACAAAAAGAAGTGA
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Synonyms
Publications