rna2021, rna2021 (mRNA) Nannochloropsis gaditana

Overview
Namerna2021
Unique Namerna2021
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationCM002458.1:716982..717740 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100177g1.1007.mrna
Orig protein idgnl|cribi|Naga_100177g1.1007
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:716982..717740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g1gene1932Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2021rna2021-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28650.1cds2013Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2021 ID=rna2021|Name=rna2021|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGCGGGATGGTGGTCTGACTCCTGACGAACTCAACTACAACTCCGCCAT
TTCGGCCTGTGGGAAGGCTGCCCAGTGGGCCCATGCCATTCGCCTGCTCC
GAGAGATGGCCGTACAGGGGCTCTGCCCCGACGTGAGGGTGGCGCTCTTG
GCGGAGATGCGGGACGTGGGCCTGGTGCCTAACGAGGTCTGCTACCACTC
GGCGGTCACAGCCTGCTCAGAGGCCGGGCGGTGGAACGAGGCCCTTTTTG
TGCTCTCGGAGATGGTCAAGCAGGGTCTCAAGCCGGACGCGATCAGCTAC
AATGCTGCCGTGGAGGCCTGCGCCAAGTCTGCCAAGTGGGACGCCCTGAT
CATCCTCCTGCAAGAAACCAGCCGCGACCCGGATGTGACGCTGGTGGAGG
CCGTCTACAACAACGCGATCATGACATGCTCTAAGTACGGGAACTGGGAG
TTGGCAGCTACGGTGCTGCAGGAGATGGATGGGAGCTAA
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protein sequence of rna2021

>rna2021-protein ID=rna2021-protein|Name=rna2021|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
NAAPCTDQSDLGGAHSEVSTRERAVALLHSMTVGGSPFNSNSSDLLYAPS
SPTLSSSPGSSSSCRPPLLSPPTASTQFSVGSGEEVMPGKRKPQWEGTLH
ALAEMARMDGHGNEDNLGASVTCTRSLLTPSSMASPRSVGLIGSPSSSSL
PGPLLLSPGSPVMALGPGSPLLKSDSGGGGAHLVLKHSTEGEGAEMKKND
DSSSYSRNHSSVDLEGSGQFSLQPSLQPLSVGLVEASSSSPSAPVTTPGN
EE
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mRNA from alignment at CM002458.1:716982..717740+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2021 ID=rna2021|Name=rna2021|organism=Nannochloropsis gaditana|type=mRNA|length=759bp|location=Sequence derived from alignment at CM002458.1:716982..717740+ (Nannochloropsis gaditana)
AATGCGGCGCCTTGTACTGACCAATCGGACCTTGGCGGGGCACACAGCGA
GGTCTCGACGCGTGAGAGAGCCGTAGCTTTGCTTCACAGCATGACCGTGG
GCGGCTCGCCTTTCAACAGTAACAGCAGCGACTTGTTGTACGCACCATCA
TCTCCAACCCTGTCTTCGTCGCCAggatcgtcctcctcgtgcaggcCGCC
TCTGCTTTCTCCGCCAACGGCTTCGACGCAGTTCTCGGTCGGGTCTGGCG
AAGAGGTCATGCCAGGCAAGAGAAAGCCGCAGTGGGAAGGCACTCTGCAT
GCTTTGGCCGAGATGGCGCGGATGGACGGACATGGCAACGAGGATAACCT
GGGTGCTAGCGTAACATGTACTCGCAGCTTGCTTACGCCCTCAAGCATGG
CCTCGCCGCGCTCAGTAGGCTTGATCGGCagcccgtcttcctcgtccctc
cctggaCCTTTGCTGTTGTCGCCGGGTTCGCCGGTGATGGCGCTCGGACC
CGGAAGTCCTCTGCTCAAAAGCgacagcggcggcggcggcgcgcATCTTG
TTTTGAAGCACAGCacagaaggggaaggtgccgagatgaagaagaatgac
gacagcagcagctaCAGCAGGAATCATAGCAGCGTGGATTTGGAAGGAAG
CGGTCAGTTCTCGCTTCAACCCTCGCTTCAACCCCTCTCTGTCGGGTTGG
TGGAAGCgagctcgtcttccccctcggcgCCCGTGACCACACCCGGCAAT
GAGGAAtag
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Coding sequence (CDS) from alignment at CM002458.1:716982..717740+

>rna2021 ID=rna2021|Name=rna2021|organism=Nannochloropsis gaditana|type=CDS|length=759bp|location=Sequence derived from alignment at CM002458.1:716982..717740+ (Nannochloropsis gaditana)
AATGCGGCGCCTTGTACTGACCAATCGGACCTTGGCGGGGCACACAGCGA
GGTCTCGACGCGTGAGAGAGCCGTAGCTTTGCTTCACAGCATGACCGTGG
GCGGCTCGCCTTTCAACAGTAACAGCAGCGACTTGTTGTACGCACCATCA
TCTCCAACCCTGTCTTCGTCGCCAggatcgtcctcctcgtgcaggcCGCC
TCTGCTTTCTCCGCCAACGGCTTCGACGCAGTTCTCGGTCGGGTCTGGCG
AAGAGGTCATGCCAGGCAAGAGAAAGCCGCAGTGGGAAGGCACTCTGCAT
GCTTTGGCCGAGATGGCGCGGATGGACGGACATGGCAACGAGGATAACCT
GGGTGCTAGCGTAACATGTACTCGCAGCTTGCTTACGCCCTCAAGCATGG
CCTCGCCGCGCTCAGTAGGCTTGATCGGCagcccgtcttcctcgtccctc
cctggaCCTTTGCTGTTGTCGCCGGGTTCGCCGGTGATGGCGCTCGGACC
CGGAAGTCCTCTGCTCAAAAGCgacagcggcggcggcggcgcgcATCTTG
TTTTGAAGCACAGCacagaaggggaaggtgccgagatgaagaagaatgac
gacagcagcagctaCAGCAGGAATCATAGCAGCGTGGATTTGGAAGGAAG
CGGTCAGTTCTCGCTTCAACCCTCGCTTCAACCCCTCTCTGTCGGGTTGG
TGGAAGCgagctcgtcttccccctcggcgCCCGTGACCACACCCGGCAAT
GAGGAAtag
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Synonyms
Publications