EWM28650.1, cds2013 (CDS) Nannochloropsis gaditana

Overview
NameEWM28650.1
Unique Namecds2013
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:716982..717740 +

Link to JBrowse

Properties
Property NameValue
Start range716982
Start range.
Protein idEWM28650.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100177g1.1007.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:716982..717740 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28650.1 vs. NCBI_GenBank
Match: gi|585111071|gb|EWM28650.1| (hypothetical protein Naga_100177g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 488.419 bits (1256), Expect = 3.428e-174
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 
Query:    1 NAAPCTDQSDLGGAHSEVSTRERAVALLHSMTVGGSPFNSNSSDLLYAPSSPTLSSSPGSSSSCRPPLLSPPTASTQFSVGSGEEVMPGKRKPQWEGTLHALAEMARMDGHGNEDNLGASVTCTRSLLTPSSMASPRSVGLIGSPSSSSLPGPLLLSPGSPVMALGPGSPLLKSDSGGGGAHLVLKHSTEGEGAEMKKNDDSSSYSRNHSSVDLEGSGQFSLQPSLQPLSVGLVEASSSSPSAPVTTPGNEE 252
            NAAPCTDQSDLGGAHSEVSTRERAVALLHSMTVGGSPFNSNSSDLLYAPSSPTLSSSPGSSSSCRPPLLSPPTASTQFSVGSGEEVMPGKRKPQWEGTLHALAEMARMDGHGNEDNLGASVTCTRSLLTPSSMASPRSVGLIGSPSSSSLPGPLLLSPGSPVMALGPGSPLLKSDSGGGGAHLVLKHSTEGEGAEMKKNDDSSSYSRNHSSVDLEGSGQFSLQPSLQPLSVGLVEASSSSPSAPVTTPGNEE
Sbjct:    1 NAAPCTDQSDLGGAHSEVSTRERAVALLHSMTVGGSPFNSNSSDLLYAPSSPTLSSSPGSSSSCRPPLLSPPTASTQFSVGSGEEVMPGKRKPQWEGTLHALAEMARMDGHGNEDNLGASVTCTRSLLTPSSMASPRSVGLIGSPSSSSLPGPLLLSPGSPVMALGPGSPLLKSDSGGGGAHLVLKHSTEGEGAEMKKNDDSSSYSRNHSSVDLEGSGQFSLQPSLQPLSVGLVEASSSSPSAPVTTPGNEE 252
The following BLAST results are available for this feature:
BLAST of EWM28650.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111071|gb|EWM28650.1|3.428e-174100.00hypothetical protein Naga_100177g1, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2021rna2021Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications