rna2018, rna2018 (mRNA) Nannochloropsis gaditana

Overview
Namerna2018
Unique Namerna2018
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1790
Alignment locationCM002458.1:711537..713453 -

Link to JBrowse

Properties
Property NameValue
ProductMpv17/PMP22
Orig transcript idgnl|cribi|Naga_100002g3.4847.mrna
Orig protein idgnl|cribi|Naga_100002g3.4847
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:711537..713453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g3gene1929Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2018rna2018-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28728.1cds2010Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2018 ID=rna2018|Name=rna2018|organism=Nannochloropsis gaditana|type=mRNA|length=1790bp
TTTTTCTCGTAAACATCTCGTCGCACTCCGCTCCCTCTCAGTATCATCCT
GGGAGACTCAATCCCGAGCCTTCTTTCCGCATCCTGGTCACGCACAGGAC
AGGGGTAACCACGGCGGCAGAGGCAACCTCCCCGTGCTAGCCTCGGTTGG
ACTGTATCGACCACTCTTACTCCTACACTTGTGCCGCAGTTCGCCTGACA
AGTATCAAGTATTGAAATTGTGAAAATCTCGTACATTGGAAGTTCGACGA
TCGTTGGGAGGTGCAGCATGGTCGGCCTGACGTGATTCAAGAGCGTGGTT
TGCCCTCCTCTACCTGTGACCGCTTTTCAAGGGTGGGACACGGACCTTTT
TTCGAGACATCAATTCCAGAGATTTTTTTATCAAGCGATGTGTGAGACCG
GAAATCAATTGGCGGAGCTCGTGTCAAAAGTGGAAAAGCATCTAGGCAGG
ATAGCCAAGGGCAATGACACGGACGGGAGGGAGTACACGTCTTTGTCGGA
AATGTGGGCCACGGTAGGGATTTTGGAGCCTTCGGTAGCCCTCAAGGCGG
GTGCAACTCGGAAAAGAGTGGCTGAATTGGTGAACGGCGCAGCGGATGAA
ACGGCAAGCGTACCTGCATGGTACACACAGGCATATTCATATTGGGAAGC
CGAGGGAAACTGCCCTCCGACAATAGACGGAGTCCTAGGAGGCTTTGGCC
ACGTGTCAGGCACCGATATAGCAGGCTCGCGCCGGTTCTTAGAGGGTCGC
GTCAAGCCATTGCTGCCCGCAATGCGCCTAGAGAAAGCCGCGGACTGCGG
GGCCGGTATCGGGCGTGTGACCAAGCTCTTGCTCCTCCCCATCTTCGCGT
CCGTCGACCTGCTCGAGCCAAGTCCTCGCCTCCTGGCCGCCGCTCCCTCC
TTCATGTTCGGGCAAGAGGGACATCGTGCTGCCAGAATGGAGGCAGAGGT
CCTGCTTTCTGAAGGTGGCGAGGAGGAGAAGTTGCGGGAGCAAGCCGTGG
TAGGGATGCGGGGTCGCGAGGAGCCATATGGCAAGGCGGAAGATGCGGAC
CCGCGTGCCGGCTCACTGCCCACGCGCCAGCAGCAAGGGATGAAAGCTCC
ACCGGAGGCGCGTGTGCGGTACCTGTGCCTGGGCATGCAGGACTTCCAGC
CGGCGTCCGGGGTTGTGTACGACGTCGTCTGGATCCAGTGGTGTATCGGC
CACTTGCACGACCTGGACCTGGTTCGCTTCCTTGTCCGGATCAAGGCGGC
TCTGCGGCCGGAGACTGGCGCCGTGATCGTCAAAGACAACTGTTGCGATG
CCTCGGCGGACTTCGTCGTGGACACGGGGGATAGCAGCCTGACGCGCTCC
CCGGCCTATCTCAAGGCCTTGTTCGAGATCGCTGGGTATGATCTGAGGGT
GGAAGAAAGGCAACAGGGTTTTCCCGCGGAGCTCTTTCCTGTGATCATGT
TTTGCTTCACGGCGAAAAAGGAGGCTAGCCAGAGCGGGGAGGGCTGGGGC
CCATGAGCCTGGGAGGAAGTGTTCAGTTGTGGGGAACCTGTCCAGCGCGA
GGCTTTTAGACACACTTTGAGATGCCCATTCTCAATGCATCGTGCCCAGC
ATTCTTTACACGTTGCAATTACCCCCAAAGCAACAGCGACTTGCCACAAA
CCCCCCTACCGCGCGTGTCAGGGGCGGGCTGCGGTCTGTATTGCACATTT
TTTTTACCCCCCTCCCGAACGTTAAAGATCATTTGAACCACAGGGTCGGT
TTAAAACCAATACCAATCCCAAACATCCCTTACACTTTTG
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protein sequence of rna2018

>rna2018-protein ID=rna2018-protein|Name=rna2018|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MRVAVALLGSLALGEAYFRPLAPRAPLSSFSKCSVAQSLSHGGIGGNGGN
DDVWGGWNGGGWNGGDDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVT
SLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGAL
DEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKI
NQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLA
SRKA
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mRNA from alignment at CM002458.1:711537..713453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2018 ID=rna2018|Name=rna2018|organism=Nannochloropsis gaditana|type=mRNA|length=1917bp|location=Sequence derived from alignment at CM002458.1:711537..713453- (Nannochloropsis gaditana)
CCGGCCCTGCATCGTGCCGGACTTACCGCAATGCACGGCGTTGAGTGCAT
GCCTTTTCCGGGAGGTTGGCACTGGCTATGTGGTCAAATTGCCACGTATG
TTACACTCCGCCGGGCATATGCCTAGGTGAAGGTCAACAAGAAAGATACT
GCAGCAGGCAGCCTCTCCCTGCGCGTCAGGAGGCACAGGGGGATGGCATG
TTCCGATGCTGGCTTGACGCATTACTTGCACGCCCTTTTCTAAACTTTGG
TCTTTGGGCAGCTTTATGAGCGGCCTGTACGAGGCTTGCAGTTCGCGTTG
TAATTGACAGCATTATTTTGTAGTACATCGGTTCGAGCCCGAAGCCTGCT
CAGCGGCAGCACCCGAAGCAGAAACTCTCATCGTACATAGATGCATTTCA
CTACCTTACAAATGAGTGTTTTTGATGTAGTAGCTTTTTGGAAGACTTGA
CGCGTGTATTTGACCACAACGAAAGATGAAAGACCTCTTACTTGCCATCA
ACATAACCACACAATTGCCTAGCACTTCCGCTTTTCGGAAATCATGCGCG
TTGCTGTCGCTCTACTCGGCTCATTGGCCCTTGGTGAGGCTTATTTCAGG
CCCCTGGCACCCCGTGCTCCCCTCTCTTCTTTTTCCAAGTGCTCAGTCGC
TCAGTCCTTGAGTCACGGTGGCATCGGCGGGAATGGGGGCAACGACGACG
TGTGGGGAGGGTGGAATGGGGGAGGATGGAATGGGGGAGATGACGAGCAC
GGAGGCGCGCACTACGGAGGCGGATTGGGCTTGTTGTGGGACAAGTATAA
TGAGGTTCTGGACACGAACCCTTTGCCGACCAAGGCCGTCACCTCGCTGG
TAGGCTTCACCATTGGAGACTTGCTGGCGCAGAGCTTCCTGGGCGAGAAG
GGCGCTCCGCTGGACGTCAAGCGACTGCTGCGGCTGGCATCTTTTGGTCT
GGCAGTGCACGGGCCCGTGGGTCACTTCTTCTACGGGGCCCTGGACGAGA
AATTCCCCAAGAAGGACGCGCAGACGGTGGCGATCAAGGTGCTCATCGAC
CAGGTCCTGTGGGCGCCTGTCTTCACCGTCATCTTCTTCGCCTGGATCGA
GGTGCTGCAGGGTGCAGGCTTGCAGAAAATCAAACAGAAGATCAATCAGG
ACCTCGTCCGTGGCGTGACGGCCTCCTGGAAAGTTTGGCCGTTGGTGCAC
GTCATTAACTTCCGCTTCATTCCTCCCCAGCAGCGATTGTTGTACATTAA
CACCATCCAAATTGGCTACAATGTCTTCCTCTCCATGCTTGCATCTCGCA
AAGGTAGGTTGGAGGACTCCATGTTAGAGGCGGGCGGGAAATAGAGAAAT
CTGTGACGCGGCGGCTCATAGAAATTGACTGTAGCCTTTCATGGCTCGGA
AGCGAGAGCTTCAGCGGTTGTTGTCCTTCTTTTTACATGAACGTGGGATT
GTCAAGCTCATCGCGTGCATAGACTGTAACTTACTCGTTGTGTTTTTTTT
TTTCCAAACACACGCAGCCTAGAACCATCCAATACCGATTCGCAGATCCC
TCTAAGCATTTCAAGTGGCATCTCGAAGTACTGATGGAAAATTGCGCTGA
CATCACGAGATCGAGCTGCAAAGTGGGCGAGAGTTGATCGCTTGTCGTAT
GTCTTTTAAGTGACGAGGTTGGTAGGACTGCACGTATGAAGCAAAAATGC
CTTGAGGAATTCCCGTCGTTTATTAGATACAGAATTTCGAAAGCTTAAGT
CATATGGGATAATCATAATCTGCTCGCAGGGTTTACGAGGGCAACATCAA
ACGGCGGATAAAGGGTGGCGCCAGACCTCTTCCTCTCTCAGGAACCATCA
CAGTCACCTCACAATAAAGGCACAAAGAAAATAAAAAGAACTCGCATGAC
TTTTTCGAGTACGACAT
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Coding sequence (CDS) from alignment at CM002458.1:711537..713453-

>rna2018 ID=rna2018|Name=rna2018|organism=Nannochloropsis gaditana|type=CDS|length=1530bp|location=Sequence derived from alignment at CM002458.1:711537..713453- (Nannochloropsis gaditana)
CCTAGATGCGCGTTGCTGTCGCTCTACTCGGCTCATTGGCCCTTGGTGAG
GCTTATTTCAGGCCCCTGGCACCCCGTGCTCCCCTCTCTTCTTTTTCCAA
GTGCTCAGTCGCTCAGTCCTTGAGTCACGGTGGCATCGGCGGGAATGGGG
GCAACGACGACGTGTGGGGAGGGTGGAATGGGGGAGGATGGAATGGGGGA
GATGACGAGCACGGAGGCGCGCACTACGGAGGCGGATTGGGCTTGTTGTG
GGACAAGTATAATGAGGTTCTGGACACGAACCCTTTGCCGACCAAGGCCG
TCACCTCGCTGGTAGGCTTCACCATTGGAGACTTGCTGGCGCAGAGCTTC
CTGGGCGAGAAGGGCGCTCCGCTGGACGTCAAGCGACTGCTGCGGCTGGC
ATCTTTTGGTCTGGCAGTGCACGGGCCCGTGGGTCACTTCTTCTACGGGG
CCCTGGACGAGAAATTCCCCAAGAAGGACGCGCAGACGGTGGCGATCAAG
GTGCTCATCGACCAGGTCCTGTGGGCGCCTGTCTTCACCGTCATCTTCTT
CGCCTGGATCGAGGTGCTGCAGGGTGCAGGCTTGCAGAAAATCAAACAGA
AGATCAATCAGGACCTCGTCCGTGGCGTGACGGCCTCCTGGAAAGTTTGG
CCGTTGGTGCACGTCATTAACTTCCGCTTCATTCCTCCCCAGCAGCGATT
GTTGTACATTAACACCATCCAAATTGGCTACAATGTCTTCCTCTCCATGC
TTGCATCTCGCAAAGCCTAGATGCGCGTTGCTGTCGCTCTACTCGGCTCA
TTGGCCCTTGGTGAGGCTTATTTCAGGCCCCTGGCACCCCGTGCTCCCCT
CTCTTCTTTTTCCAAGTGCTCAGTCGCTCAGTCCTTGAGTCACGGTGGCA
TCGGCGGGAATGGGGGCAACGACGACGTGTGGGGAGGGTGGAATGGGGGA
GGATGGAATGGGGGAGATGACGAGCACGGAGGCGCGCACTACGGAGGCGG
ATTGGGCTTGTTGTGGGACAAGTATAATGAGGTTCTGGACACGAACCCTT
TGCCGACCAAGGCCGTCACCTCGCTGGTAGGCTTCACCATTGGAGACTTG
CTGGCGCAGAGCTTCCTGGGCGAGAAGGGCGCTCCGCTGGACGTCAAGCG
ACTGCTGCGGCTGGCATCTTTTGGTCTGGCAGTGCACGGGCCCGTGGGTC
ACTTCTTCTACGGGGCCCTGGACGAGAAATTCCCCAAGAAGGACGCGCAG
ACGGTGGCGATCAAGGTGCTCATCGACCAGGTCCTGTGGGCGCCTGTCTT
CACCGTCATCTTCTTCGCCTGGATCGAGGTGCTGCAGGGTGCAGGCTTGC
AGAAAATCAAACAGAAGATCAATCAGGACCTCGTCCGTGGCGTGACGGCC
TCCTGGAAAGTTTGGCCGTTGGTGCACGTCATTAACTTCCGCTTCATTCC
TCCCCAGCAGCGATTGTTGTACATTAACACCATCCAAATTGGCTACAATG
TCTTCCTCTCCATGCTTGCATCTCGCAAAG
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Synonyms
Publications