EWM28728.1, cds2010 (CDS) Nannochloropsis gaditana

Overview
NameEWM28728.1
Unique Namecds2010
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:712151..712910 -
Alignment locationCM002458.1:711932..711936 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28728.1
ProductMpv17/PMP22
Orig transcript idgnl|cribi|Naga_100002g3.4847.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:712151..712910 -
CM002458.1supercontigCM002458.1:711932..711936 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|585111151|gb|EWM28728.1| (Mpv17/PMP22 [Nannochloropsis gaditana])

HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MRVAVALLGSLALGEAYFRPLAPRAPLSSFSKCSVAQSLSHGGIGGNGGNDDVWGGWNGGGWNGGDDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
            MRVAVALLGSLALGEAYFRPLAPRAPLSSFSKCSVAQSLSHGGIGGNGGNDDVWGGWNGGGWNGGDDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA
Sbjct:    1 MRVAVALLGSLALGEAYFRPLAPRAPLSSFSKCSVAQSLSHGGIGGNGGNDDVWGGWNGGGWNGGDDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254          
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|585110478|gb|EWM28134.1| (mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 211.846 bits (538), Expect = 1.701e-64
Identity = 103/175 (58.86%), Postives = 128/175 (73.14%), Query Frame = 0
Query:   78 LGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASR 252
            L LLW  YN++L   PL TKA+TS VGF++GDLLAQ F+ +K   +D+KRLL+LA FGL VHGP GH+FYG LD K P   A TVA KV IDQ+LW P+F  +FF W+ + +G  L+ IK +I +DL   V  SW VWP+ H INFRFIP  QRLLYIN++QIGYN+FLS LA+R
Sbjct:  101 LQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFI-DKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANR 274          
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|551581993|ref|XP_005776476.1| (putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516] >gi|485628580|gb|EOD24047.1| putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 204.527 bits (519), Expect = 8.034e-62
Identity = 101/191 (52.88%), Postives = 125/191 (65.45%), Query Frame = 0
Query:   64 GGDDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
            GGDD+             W KYNE+LD  PL  KA TS +GF IGD+LAQ F+ ++    D  RL RLASFG  VHG   H+FYG LD   P K AQ V  KV IDQVLW P+  ++FF+++  L+  GLQ +  K   +L+R VT SWKVWPL H INFRFIP  QR+LYIN+IQIGYN FLS++++R A
Sbjct:   87 GGDDDESNPFASA-----WKKYNELLDEKPLLMKAFTSFLGFAIGDILAQIFIQKQD--FDWYRLFRLASFGFLVHGTSSHWFYGMLDSAIPGKGAQPVFTKVFIDQVLWNPILGIMFFSYVACLEWKGLQYVIDKTRNELLRQVTGSWKVWPLAHAINFRFIPSSQRVLYINSIQIGYNCFLSLISNRDA 270          
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|147905308|ref|NP_001090480.1| (uncharacterized protein LOC779393 [Xenopus laevis] >gi|114107768|gb|AAI23161.1| MGC154358 protein [Xenopus laevis])

HSP 1 Score: 197.593 bits (501), Expect = 3.788e-60
Identity = 95/177 (53.67%), Postives = 120/177 (67.80%), Query Frame = 0
Query:   78 LGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSF-LGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRK 253
             G LW KYN  L+TNPL  KAVTSL GFT+GD+LAQ F + +K    D+ R +RL SFG  VHGP GH+FY  LD++ P    +TVA KV IDQ+LW P F V+FF+++ + +G     I+ KI  DL   V  SW VW   H +NFRF+P  QRLLYIN+IQIGYN+FLS L ++K
Sbjct:    2 FGRLWTKYNAALETNPLLIKAVTSLTGFTLGDILAQKFVMPDKEKGYDLMRTVRLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFADIQTKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKK 178          
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|223995359|ref|XP_002287363.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220976479|gb|EED94806.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 196.438 bits (498), Expect = 5.221e-60
Identity = 92/161 (57.14%), Postives = 112/161 (69.57%), Query Frame = 0
Query:   94 LPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
            L TKA+TS  GFTIGD+LAQ+F+ + G P DV R +RL SFG  +HG  GH+FYG LD KFP     TVA KVLIDQ +W P+F ++FF ++ V++G   +  K KI  DL   V  SW VW   H INF FIPPQQRLLYIN+IQIGYNVFLS L ++K 
Sbjct:    1 LLTKALTSFTGFTIGDILAQNFVNDDGKPYDVMRTVRLGSFGFFIHGTTGHYFYGFLDSKFPGTKPLTVATKVLIDQTIWNPIFGLMFFGYLNVMEGKSFEDYKNKIKADLKTAVMGSWAVWVPAHTINFAFIPPQQRLLYINSIQIGYNVFLSFLGNKKV 161          
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|1210515703|dbj|GAX25226.1| (hypothetical protein FisN_5Lh310 [Fistulifera solaris] >gi|1210524204|dbj|GAX16933.1| hypothetical protein FisN_5Hh310 [Fistulifera solaris])

HSP 1 Score: 196.438 bits (498), Expect = 5.809e-60
Identity = 92/173 (53.18%), Postives = 115/173 (66.47%), Query Frame = 0
Query:   81 LWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRK 253
            LW +YN++LD  PL TKA+TSL GFT+GD+LAQ F+     P D+ R +RL SFG  +HG  GH+FYG LD K P     TVA KV IDQ +W P+F ++FF ++  ++G   +    KI  DL   V  SW VW   H INF FIPP QRLLYIN+IQIGYNVFLS L ++K
Sbjct:    4 LWARYNKMLDAQPLLTKALTSLTGFTLGDVLAQKFVEPTDKPYDLMRTVRLGSFGFLIHGTTGHYFYGFLDGKLPGTAPMTVATKVAIDQTIWNPIFGLMFFGYLNFVEGKSFEDYTNKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNVFLSFLGNKK 176          
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|299470016|emb|CBN79193.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 200.29 bits (508), Expect = 6.622e-60
Identity = 96/176 (54.55%), Postives = 114/176 (64.77%), Query Frame = 0
Query:   77 GLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASR 252
            G G  WD YN  L   P+  KA TS VGF+IGD LAQ   G         RL R+A+FG   HG + HFFY ALD   P   A TV  KV+IDQV WAP+FT+IFF WI V  GA   +I  K+  DLV+GV  SW VWPL H INF+F+P +QRLLYIN+IQI YNVFLS++ S+
Sbjct:  122 GAGGAWDAYNSALADKPILVKACTSFVGFSIGDFLAQK--GTSKESFSYARLARMAAFGFLFHGTISHFFYNALDSALPGTAAMTVIQKVIIDQVFWAPIFTLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 295          
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|545710488|ref|XP_005707552.1| (peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria] >gi|452824026|gb|EME31032.1| peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria])

HSP 1 Score: 199.904 bits (507), Expect = 7.052e-60
Identity = 96/185 (51.89%), Postives = 128/185 (69.19%), Query Frame = 0
Query:   70 GGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
            GG+H    L   W +YN++L++ PL TK++TSL+GF +GD+LAQ FL   G  L + RLLR+A FG  +HGP GH FY  LD+  P  +A  VA KV IDQVLWAP+F +IFF ++ VL+    ++ + K+ QD    + ASWKVWPL H INFRFIP  QRLLYIN +QI YNVFLS++ +++ 
Sbjct:  102 GGSH---PLLSFWMRYNQLLESRPLLTKSLTSLIGFILGDILAQKFLSSDGI-LHLDRLLRMALFGFLIHGPTGHIFYTQLDKAIPGTEAWKVACKVAIDQVLWAPIFALIFFGFLAVLERQSFKQFEAKLRQDWKTAIFASWKVWPLAHAINFRFIPSHQRLLYINAVQIFYNVFLSIIGNKRT 282          
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|585108126|gb|EWM26132.1| (mpv17-like protein [Nannochloropsis gaditana] >gi|585108127|gb|EWM26133.1| mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 196.052 bits (497), Expect = 1.363e-59
Identity = 98/179 (54.75%), Postives = 121/179 (67.60%), Query Frame = 0
Query:   78 LGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLG---EKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRK 253
             G LW +YN  L+ NPL  KA+TSL GFTIGD+LAQ F+    EKG   D+ R +RL SFG  VHGP GHFFYG LD++ P    +TVA KV IDQ+LW P F V+FF+++ + +G     I+ KI  DL   V  SW VW   H INFRF+P  QRLLYIN+IQIGYN+FLS L ++K
Sbjct:    2 FGRLWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKG--YDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKK 178          
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|397623117|gb|EJK66898.1| (hypothetical protein THAOC_12131, partial [Thalassiosira oceanica])

HSP 1 Score: 195.282 bits (495), Expect = 1.692e-59
Identity = 90/166 (54.22%), Postives = 113/166 (68.07%), Query Frame = 0
Query:   89 LDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
            L+  PL TKA+TSL GF+IGD+LAQ F+ + G P D  R LRL SFG  VHG  GH+FYG LD K P    QTVA KVLIDQ +W P+F ++FF ++ V +G   ++  +K+  DL   V  SW VW   H INF F+PP QRLLYIN+IQIGYN+FLS L ++K 
Sbjct:    1 LEAQPLLTKALTSLTGFSIGDILAQKFVNDDGKPYDPMRTLRLGSFGFFVHGTTGHYFYGFLDSKLPGTKPQTVATKVLIDQTMWNPIFGLMFFGYLNVCEGKSFEEYTKKVKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINSIQIGYNIFLSFLGNKKV 166          
The following BLAST results are available for this feature:
BLAST of EWM28728.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111151|gb|EWM28728.1|0.000e+0100.00Mpv17/PMP22 [Nannochloropsis gaditana][more]
gi|585110478|gb|EWM28134.1|1.701e-6458.86mpv17-like protein [Nannochloropsis gaditana][more]
gi|551581993|ref|XP_005776476.1|8.034e-6252.88putative peroxisomal membrane protein [Emiliania h... [more]
gi|147905308|ref|NP_001090480.1|3.788e-6053.67uncharacterized protein LOC779393 [Xenopus laevis]... [more]
gi|223995359|ref|XP_002287363.1|5.221e-6057.14predicted protein, partial [Thalassiosira pseudona... [more]
gi|1210515703|dbj|GAX25226.1|5.809e-6053.18hypothetical protein FisN_5Lh310 [Fistulifera sola... [more]
gi|299470016|emb|CBN79193.1|6.622e-6054.55conserved unknown protein [Ectocarpus siliculosus][more]
gi|545710488|ref|XP_005707552.1|7.052e-6051.89peroxisomal membrane MPV17/PMP22-like protein [Gal... [more]
gi|585108126|gb|EWM26132.1|1.363e-5954.75mpv17-like protein [Nannochloropsis gaditana] >gi|... [more]
gi|397623117|gb|EJK66898.1|1.692e-5954.22hypothetical protein THAOC_12131, partial [Thalass... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2018rna2018Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications