EWM28728.1, cds2010 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|585111151|gb|EWM28728.1| (Mpv17/PMP22 [Nannochloropsis gaditana]) HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0 Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query: 1 MRVAVALLGSLALGEAYFRPLAPRAPLSSFSKCSVAQSLSHGGIGGNGGNDDVWGGWNGGGWNGGDDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
MRVAVALLGSLALGEAYFRPLAPRAPLSSFSKCSVAQSLSHGGIGGNGGNDDVWGGWNGGGWNGGDDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA
Sbjct: 1 MRVAVALLGSLALGEAYFRPLAPRAPLSSFSKCSVAQSLSHGGIGGNGGNDDVWGGWNGGGWNGGDDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|585110478|gb|EWM28134.1| (mpv17-like protein [Nannochloropsis gaditana]) HSP 1 Score: 211.846 bits (538), Expect = 1.701e-64 Identity = 103/175 (58.86%), Postives = 128/175 (73.14%), Query Frame = 0
Query: 78 LGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASR 252
L LLW YN++L PL TKA+TS VGF++GDLLAQ F+ +K +D+KRLL+LA FGL VHGP GH+FYG LD K P A TVA KV IDQ+LW P+F +FF W+ + +G L+ IK +I +DL V SW VWP+ H INFRFIP QRLLYIN++QIGYN+FLS LA+R
Sbjct: 101 LQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFI-DKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANR 274
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|551581993|ref|XP_005776476.1| (putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516] >gi|485628580|gb|EOD24047.1| putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516]) HSP 1 Score: 204.527 bits (519), Expect = 8.034e-62 Identity = 101/191 (52.88%), Postives = 125/191 (65.45%), Query Frame = 0
Query: 64 GGDDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
GGDD+ W KYNE+LD PL KA TS +GF IGD+LAQ F+ ++ D RL RLASFG VHG H+FYG LD P K AQ V KV IDQVLW P+ ++FF+++ L+ GLQ + K +L+R VT SWKVWPL H INFRFIP QR+LYIN+IQIGYN FLS++++R A
Sbjct: 87 GGDDDESNPFASA-----WKKYNELLDEKPLLMKAFTSFLGFAIGDILAQIFIQKQD--FDWYRLFRLASFGFLVHGTSSHWFYGMLDSAIPGKGAQPVFTKVFIDQVLWNPILGIMFFSYVACLEWKGLQYVIDKTRNELLRQVTGSWKVWPLAHAINFRFIPSSQRVLYINSIQIGYNCFLSLISNRDA 270
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|147905308|ref|NP_001090480.1| (uncharacterized protein LOC779393 [Xenopus laevis] >gi|114107768|gb|AAI23161.1| MGC154358 protein [Xenopus laevis]) HSP 1 Score: 197.593 bits (501), Expect = 3.788e-60 Identity = 95/177 (53.67%), Postives = 120/177 (67.80%), Query Frame = 0
Query: 78 LGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSF-LGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRK 253
G LW KYN L+TNPL KAVTSL GFT+GD+LAQ F + +K D+ R +RL SFG VHGP GH+FY LD++ P +TVA KV IDQ+LW P F V+FF+++ + +G I+ KI DL V SW VW H +NFRF+P QRLLYIN+IQIGYN+FLS L ++K
Sbjct: 2 FGRLWTKYNAALETNPLLIKAVTSLTGFTLGDILAQKFVMPDKEKGYDLMRTVRLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFADIQTKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKK 178
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|223995359|ref|XP_002287363.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220976479|gb|EED94806.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 196.438 bits (498), Expect = 5.221e-60 Identity = 92/161 (57.14%), Postives = 112/161 (69.57%), Query Frame = 0
Query: 94 LPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
L TKA+TS GFTIGD+LAQ+F+ + G P DV R +RL SFG +HG GH+FYG LD KFP TVA KVLIDQ +W P+F ++FF ++ V++G + K KI DL V SW VW H INF FIPPQQRLLYIN+IQIGYNVFLS L ++K
Sbjct: 1 LLTKALTSFTGFTIGDILAQNFVNDDGKPYDVMRTVRLGSFGFFIHGTTGHYFYGFLDSKFPGTKPLTVATKVLIDQTIWNPIFGLMFFGYLNVMEGKSFEDYKNKIKADLKTAVMGSWAVWVPAHTINFAFIPPQQRLLYINSIQIGYNVFLSFLGNKKV 161
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|1210515703|dbj|GAX25226.1| (hypothetical protein FisN_5Lh310 [Fistulifera solaris] >gi|1210524204|dbj|GAX16933.1| hypothetical protein FisN_5Hh310 [Fistulifera solaris]) HSP 1 Score: 196.438 bits (498), Expect = 5.809e-60 Identity = 92/173 (53.18%), Postives = 115/173 (66.47%), Query Frame = 0
Query: 81 LWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRK 253
LW +YN++LD PL TKA+TSL GFT+GD+LAQ F+ P D+ R +RL SFG +HG GH+FYG LD K P TVA KV IDQ +W P+F ++FF ++ ++G + KI DL V SW VW H INF FIPP QRLLYIN+IQIGYNVFLS L ++K
Sbjct: 4 LWARYNKMLDAQPLLTKALTSLTGFTLGDVLAQKFVEPTDKPYDLMRTVRLGSFGFLIHGTTGHYFYGFLDGKLPGTAPMTVATKVAIDQTIWNPIFGLMFFGYLNFVEGKSFEDYTNKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNVFLSFLGNKK 176
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|299470016|emb|CBN79193.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 200.29 bits (508), Expect = 6.622e-60 Identity = 96/176 (54.55%), Postives = 114/176 (64.77%), Query Frame = 0
Query: 77 GLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASR 252
G G WD YN L P+ KA TS VGF+IGD LAQ G RL R+A+FG HG + HFFY ALD P A TV KV+IDQV WAP+FT+IFF WI V GA +I K+ DLV+GV SW VWPL H INF+F+P +QRLLYIN+IQI YNVFLS++ S+
Sbjct: 122 GAGGAWDAYNSALADKPILVKACTSFVGFSIGDFLAQK--GTSKESFSYARLARMAAFGFLFHGTISHFFYNALDSALPGTAAMTVIQKVIIDQVFWAPIFTLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 295
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|545710488|ref|XP_005707552.1| (peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria] >gi|452824026|gb|EME31032.1| peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria]) HSP 1 Score: 199.904 bits (507), Expect = 7.052e-60 Identity = 96/185 (51.89%), Postives = 128/185 (69.19%), Query Frame = 0
Query: 70 GGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
GG+H L W +YN++L++ PL TK++TSL+GF +GD+LAQ FL G L + RLLR+A FG +HGP GH FY LD+ P +A VA KV IDQVLWAP+F +IFF ++ VL+ ++ + K+ QD + ASWKVWPL H INFRFIP QRLLYIN +QI YNVFLS++ +++
Sbjct: 102 GGSH---PLLSFWMRYNQLLESRPLLTKSLTSLIGFILGDILAQKFLSSDGI-LHLDRLLRMALFGFLIHGPTGHIFYTQLDKAIPGTEAWKVACKVAIDQVLWAPIFALIFFGFLAVLERQSFKQFEAKLRQDWKTAIFASWKVWPLAHAINFRFIPSHQRLLYINAVQIFYNVFLSIIGNKRT 282
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|585108126|gb|EWM26132.1| (mpv17-like protein [Nannochloropsis gaditana] >gi|585108127|gb|EWM26133.1| mpv17-like protein [Nannochloropsis gaditana]) HSP 1 Score: 196.052 bits (497), Expect = 1.363e-59 Identity = 98/179 (54.75%), Postives = 121/179 (67.60%), Query Frame = 0
Query: 78 LGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLG---EKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRK 253
G LW +YN L+ NPL KA+TSL GFTIGD+LAQ F+ EKG D+ R +RL SFG VHGP GHFFYG LD++ P +TVA KV IDQ+LW P F V+FF+++ + +G I+ KI DL V SW VW H INFRF+P QRLLYIN+IQIGYN+FLS L ++K
Sbjct: 2 FGRLWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKG--YDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKK 178
BLAST of EWM28728.1 vs. NCBI_GenBank
Match: gi|397623117|gb|EJK66898.1| (hypothetical protein THAOC_12131, partial [Thalassiosira oceanica]) HSP 1 Score: 195.282 bits (495), Expect = 1.692e-59 Identity = 90/166 (54.22%), Postives = 113/166 (68.07%), Query Frame = 0
Query: 89 LDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRKA 254
L+ PL TKA+TSL GF+IGD+LAQ F+ + G P D R LRL SFG VHG GH+FYG LD K P QTVA KVLIDQ +W P+F ++FF ++ V +G ++ +K+ DL V SW VW H INF F+PP QRLLYIN+IQIGYN+FLS L ++K
Sbjct: 1 LEAQPLLTKALTSLTGFSIGDILAQKFVNDDGKPYDPMRTLRLGSFGFFVHGTTGHYFYGFLDSKLPGTKPQTVATKVLIDQTMWNPIFGLMFFGYLNVCEGKSFEEYTKKVKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINSIQIGYNIFLSFLGNKKV 166 The following BLAST results are available for this feature:
BLAST of EWM28728.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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