rna2017, rna2017 (mRNA) Nannochloropsis gaditana

Overview
Namerna2017
Unique Namerna2017
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2265
Alignment locationCM002458.1:709626..711415 -

Link to JBrowse

Properties
Property NameValue
Productmethyltransferase-like protein 11a
Orig transcript idgnl|cribi|Naga_100002g5.4837.mrna
Orig protein idgnl|cribi|Naga_100002g5.4837
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:709626..711415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g5gene1928Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28718.1cds2009Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2017rna2017-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2017 ID=rna2017|Name=rna2017|organism=Nannochloropsis gaditana|type=mRNA|length=2265bp
ATGGGTCAAGATCAAAGCATTTCGAATCAGCAATATCCGTCTTCATCCTA
TCCTGGTGCAGGTCGCTCCTCGGGAGGGACTAATGGCCCTGGTAATAGAC
CAAGACCTACTCCACATGTGTCCCCATTTCAGCAGCCCGCGTACAATTCG
CAACCAGGAGGAGGTCGCACAACTCGGACGGTGAACACAGAACCGGGGGC
ATTTGAAATTCCTGGCCATCAGCGATCAACAGGTCAAATTCGGGCGCAAG
TGCGGATACCGGCTGGGGTTCGACCTGGGCAGCACTTTGCCGTCCTGCTG
GAGGGTCAACAGGTTATGGTCCGTTGCCCTGACCGCGCGTCTCCCGGCGA
TCTGATCGCCATCGAATTTCAAGCTTCCACATTCATCGTGCAAGTGCCAG
AGGGGGTACAGCCTGGCCAGACTTTCGACGTGATGGTCCGAGGGGCGAGG
CAACGGGTCACGTGCCCGGACGGTGTCAGACCAGGGATGCAGATTCGATT
CTCTCTCCCTCCCGCCTCTGACGGCGGGGGTTTGGGAGGAGCAGGGGGGC
CTGGGGGAAGCACAGGTGGTGGAACGGGATCTTCAAACACGTCGGGACCA
TCTCCTTTCGAGAAATTGTACGAGGTGGTGGTGCCGCAAGGTGTGCGGCC
AGGGGAGCCCTTCGTCCTCTTGGCGGACGGCCAGCGCGTGACCGTCACCT
GCCCGGTGGACGCGCGCCCAAACCAAAAGATACGCTTCAAGCTACCCATT
GTCCCCACCAATGAGCAGCTCCAGGCGTACGAGATGCGGTATAACAAGGA
CGGGTGGGTGCGGTGCCTGGGCCAGGACGTGAAGTTCCACTGGTTCAGGG
TGGACGGCTCGAACCGGGAGCAGGGTGGCACTGCCAATGCCGTTGTGGGA
GGTGTCGGAGGATCTCTCGGAAGACCAAAGAACGGGAAATTTTCCATTGA
GAACACGGCCTTCGTACGGGCATTCAAAGGGCCTCCCCAGTCGCCAGACC
TCGTGCTGCTCCCGCCCTCGGAGGTCTCTATCGACACGACGGTGCCAGGC
ACCCGTTTGAACTTCCACACTCTCTCCCACGGGGCCCAACTTCCTTTCGA
CAAGAAGATTGAATTCTTCCGTGAGCACTGCAACAGCCTCCGGACTCCGT
GGGAGAGGGGACACATGGAGATTAGGGTGCGACGCGCGCACCTCCTGGCT
GACTCCTTGATGGCCTTCGAGGGGATCAGCACAGCCAACATGCGAAAGAT
TTTCCGCTTTGAGTTTTTGGGGGAGCCGGGCATTGACGCCGGGGGAGTGG
CTCGGGAATGGTACGACCAGGTGACTGACGCGCTCTTCAATCCAGACTTC
GGGCTCTTCCAATACAGCGGAGTGGATCAGATGTGCATGCAGATCAGTGG
GGCGTCCGGCTTGGTCGAGCCGCAACACCACCGGTACTTCCGTTTTCTGG
GTCGTTTGTTGGGGAAGGCCCTGTTGGACGGACAGATCGTGCGGCACCAC
CTGGTGCGGCCGGTGATCAAGCACATCTTGGGCTGGCCCGTGGTCCTGGC
GGACATGGAGTACCTGGACGCGGAGACGCTGCAGAATCTGGGCAAACTCC
AAGAGATGGATCCCTCCGTGCTTGGAGATCTGTGCCTGGATTTTACCGTC
ACCGAGAACTTCCTAGGACAGTCCCATACGGTGGAGCTGGTCCCTGGCGG
CGCTAATTTGACCCTGGGGCCAGAAAATCTCGACAAGTACTTGGAGGCGA
ACCTGCGCTTTCGCCTGTGCGATAGGGTCAAGACTCAGCTCCGAGAATTG
CTGCTGGGCTTTTACGAGTGCATGCCTGAGGCTCTTTTGTCTATATTCGA
CTTTCAGCAGCTAGAGTTGCTGCTCTGCGGCATGCCCAATCTGGACATAG
AGGACTGGTTAAGGAATACGGGCTATGGTGGGGAATTTGCAAGATTGGGT
GCCCAGCATCGGGTGGTGCAATGGTTTTGGGAGGTAGTTCGCAACGACTT
CGATCAGGAGCAGCGGGCGCGACTTCTTCAGTTTACGACAGGCACGTCAG
GGGTACCTGCGCAGGGATTTGCATTTTTGCAAGGGAACGATGGCAATATC
CGGAAGTTCACCATCAATAGCATCTCACTCGATCAATCAGTGTTCCCTCG
GGCGCACACATGTTTCAATCGCATTGATCTCCCTTTGTATAAGACGAAAA
AAGACCTGAAGGAACGCTTATCGCTTGCGATTCAAATGGAGTCATCGGGC
TTCTCGATAGAGTAA
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protein sequence of rna2017

>rna2017-protein ID=rna2017-protein|Name=rna2017|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MCETGNQLAELVSKVEKHLGRIAKGNDTDGREYTSLSEMWATVGILEPSV
ALKAGATRKRVAELVNGAADETASVPAWYTQAYSYWEAEGNCPPTIDGVL
GGFGHVSGTDIAGSRRFLEGRVKPLLPAMRLEKAADCGAGIGRVTKLLLL
PIFASVDLLEPSPRLLAAAPSFMFGQEGHRAARMEAEVLLSEGGEEEKLR
EQAVVGMRGREEPYGKAEDADPRAGSLPTRQQQGMKAPPEARVRYLCLGM
QDFQPASGVVYDVVWIQWCIGHLHDLDLVRFLVRIKAALRPETGAVIVKD
NCCDASADFVVDTGDSSLTRSPAYLKALFEIAGYDLRVEERQQGFPAELF
PVIMFCFTAKKEASQSGEGWGP
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mRNA from alignment at CM002458.1:709626..711415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2017 ID=rna2017|Name=rna2017|organism=Nannochloropsis gaditana|type=mRNA|length=1790bp|location=Sequence derived from alignment at CM002458.1:709626..711415- (Nannochloropsis gaditana)
TTTTTCTCGTAAACATCTCGTCGCACTCCGCTCCCTCTCAGTATCATCCT
GGGAGACTCAATCCCGAGCCTTCTTTCCGCATCCTGGTCACGCACAGGAC
AGGGGTAACCACGGCGGCAGAGGCAACCTCCCCGTGCTAGCCTCGGTTGG
ACTGTATCGACCACTCTTACTCCTACACTTGTGCCGCAGTTCGCCTGACA
AGTATCAAGTATTGAAATTGTGAAAATCTCGTACATTGGAAGTTCGACGA
TCGTTGGGAGGTGCAGCATGGTCGGCCTGACGTGATTCAAGAGCGTGGTT
TGCCCTCCTCTACCTGTGACCGCTTTTCAAGGGTGGGACACGGACCTTTT
TTCGAGACATCAATTCCAGAGATTTTTTTATCAAGCGATGTGTGAGACCG
GAAATCAATTGGCGGAGCTCGTGTCAAAAGTGGAAAAGCATCTAGGCAGG
ATAGCCAAGGGCAATGACACGGACGGGAGGGAGTACACGTCTTTGTCGGA
AATGTGGGCCACGGTAGGGATTTTGGAGCCTTCGGTAGCCCTCAAGGCGG
GTGCAACTCGGAAAAGAGTGGCTGAATTGGTGAACGGCGCAGCGGATGAA
ACGGCAAGCGTACCTGCATGGTACACACAGGCATATTCATATTGGGAAGC
CGAGGGAAACTGCCCTCCGACAATAGACGGAGTCCTAGGAGGCTTTGGCC
ACGTGTCAGGCACCGATATAGCAGGCTCGCGCCGGTTCTTAGAGGGTCGC
GTCAAGCCATTGCTGCCCGCAATGCGCCTAGAGAAAGCCGCGGACTGCGG
GGCCGGTATCGGGCGTGTGACCAAGCTCTTGCTCCTCCCCATCTTCGCGT
CCGTCGACCTGCTCGAGCCAAGTCCTCGCCTCCTGGCCGCCGCTCCCTCC
TTCATGTTCGGGCAAGAGGGACATCGTGCTGCCAGAATGGAGGCAGAGGT
CCTGCTTTCTGAAGGTGGCGAGGAGGAGAAGTTGCGGGAGCAAGCCGTGG
TAGGGATGCGGGGTCGCGAGGAGCCATATGGCAAGGCGGAAGATGCGGAC
CCGCGTGCCGGCTCACTGCCCACGCGCCAGCAGCAAGGGATGAAAGCTCC
ACCGGAGGCGCGTGTGCGGTACCTGTGCCTGGGCATGCAGGACTTCCAGC
CGGCGTCCGGGGTTGTGTACGACGTCGTCTGGATCCAGTGGTGTATCGGC
CACTTGCACGACCTGGACCTGGTTCGCTTCCTTGTCCGGATCAAGGCGGC
TCTGCGGCCGGAGACTGGCGCCGTGATCGTCAAAGACAACTGTTGCGATG
CCTCGGCGGACTTCGTCGTGGACACGGGGGATAGCAGCCTGACGCGCTCC
CCGGCCTATCTCAAGGCCTTGTTCGAGATCGCTGGGTATGATCTGAGGGT
GGAAGAAAGGCAACAGGGTTTTCCCGCGGAGCTCTTTCCTGTGATCATGT
TTTGCTTCACGGCGAAAAAGGAGGCTAGCCAGAGCGGGGAGGGCTGGGGC
CCATGAGCCTGGGAGGAAGTGTTCAGTTGTGGGGAACCTGTCCAGCGCGA
GGCTTTTAGACACACTTTGAGATGCCCATTCTCAATGCATCGTGCCCAGC
ATTCTTTACACGTTGCAATTACCCCCAAAGCAACAGCGACTTGCCACAAA
CCCCCCTACCGCGCGTGTCAGGGGCGGGCTGCGGTCTGTATTGCACATTT
TTTTTACCCCCCTCCCGAACGTTAAAGATCATTTGAACCACAGGGTCGGT
TTAAAACCAATACCAATCCCAAACATCCCTTACACTTTTG
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Coding sequence (CDS) from alignment at CM002458.1:709626..711415-

>rna2017 ID=rna2017|Name=rna2017|organism=Nannochloropsis gaditana|type=CDS|length=1119bp|location=Sequence derived from alignment at CM002458.1:709626..711415- (Nannochloropsis gaditana)
ATGTGTGAGACCGGAAATCAATTGGCGGAGCTCGTGTCAAAAGTGGAAAA
GCATCTAGGCAGGATAGCCAAGGGCAATGACACGGACGGGAGGGAGTACA
CGTCTTTGTCGGAAATGTGGGCCACGGTAGGGATTTTGGAGCCTTCGGTA
GCCCTCAAGGCGGGTGCAACTCGGAAAAGAGTGGCTGAATTGGTGAACGG
CGCAGCGGATGAAACGGCAAGCGTACCTGCATGGTACACACAGGCATATT
CATATTGGGAAGCCGAGGGAAACTGCCCTCCGACAATAGACGGAGTCCTA
GGAGGCTTTGGCCACGTGTCAGGCACCGATATAGCAGGCTCGCGCCGGTT
CTTAGAGGGTCGCGTCAAGCCATTGCTGCCCGCAATGCGCCTAGAGAAAG
CCGCGGACTGCGGGGCCGGTATCGGGCGTGTGACCAAGCTCTTGCTCCTC
CCCATCTTCGCGTCCGTCGACCTGCTCGAGCCAAGTCCTCGCCTCCTGGC
CGCCGCTCCCTCCTTCATGTTCGGGCAAGAGGGACATCGTGCTGCCAGAA
TGGAGGCAGAGGTCCTGCTTTCTGAAGGTGGCGAGGAGGAGAAGTTGCGG
GAGCAAGCCGTGGTAGGGATGCGGGGTCGCGAGGAGCCATATGGCAAGGC
GGAAGATGCGGACCCGCGTGCCGGCTCACTGCCCACGCGCCAGCAGCAAG
GGATGAAAGCTCCACCGGAGGCGCGTGTGCGGTACCTGTGCCTGGGCATG
CAGGACTTCCAGCCGGCGTCCGGGGTTGTGTACGACGTCGTCTGGATCCA
GTGGTGTATCGGCCACTTGCACGACCTGGACCTGGTTCGCTTCCTTGTCC
GGATCAAGGCGGCTCTGCGGCCGGAGACTGGCGCCGTGATCGTCAAAGAC
AACTGTTGCGATGCCTCGGCGGACTTCGTCGTGGACACGGGGGATAGCAG
CCTGACGCGCTCCCCGGCCTATCTCAAGGCCTTGTTCGAGATCGCTGGGT
ATGATCTGAGGGTGGAAGAAAGGCAACAGGGTTTTCCCGCGGAGCTCTTT
CCTGTGATCATGTTTTGCTTCACGGCGAAAAAGGAGGCTAGCCAGAGCGG
GGAGGGCTGGGGCCCATGA
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Synonyms
Publications