rna2016, rna2016 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2016
Unique Name	rna2016
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	987
Alignment location	CM002458.1:705999..708263 -

Link to JBrowse

Properties


Property Name	Value
Product	hect e3 ubiquitin
Orig transcript id	gnl\|cribi\|Naga_100002g6.4904.mrna
Orig protein id	gnl\|cribi\|Naga_100002g6.4904
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:705999..708263 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g6	gene1927	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28785.1	cds2008	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2016	rna2016-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:705999..708263-
coding sequence from alignment at CM002458.1:705999..708263-

mRNA sequence

>rna2016 ID=rna2016|Name=rna2016|organism=Nannochloropsis gaditana|type=mRNA|length=987bp
ATGTTGAAATACGCTCTGATTGCCATCTTGGCTGTTATGGGTAGCCTAAG
TGATGCATTTTTGCTTCCTGCGACGAGCTCCAGGGAGTCCGCTACAGCTC
TAATGGCTGGTAAGGCCACCTTGGACACATTGAAGCGGGTGGTTCTCACA
GACGATGTCACAGGTCACTCTGCTACCGTGCACCTGCATGGTGGCTGTGT
CACCAGCTACAAAGCCCCGCATGAAGTGCTCGGAATCCGAAAGGACGCCG
CATTTACAGGGGAAAAGCCCATTGCGGGTGGCTTACAAATCTGTTGGCCG
CAATTTGGGCCTGGGGCGATTCAGCAACATGGTTTTGCCCGCAACTTGCC
TTGGGAGGTCTCTGCTCAGTCTGACTCGGAGCCCGAGGTAACGCTGGTCT
TGAAAGAGTCGGCGGAAACACGTAAGATCTGGGACCAGGCTTTCGAGCTC
CTCTTGACCGTGCGTCTGGAGGGAGACCACTTGCTGACTCGCCTAACGGC
GAAGAACACGGGCTCAACGCCCTGGGAGTTCACCAGCGCCTTGCACAGCT
ACTATAGCGTCTCCGACGTCGCCAAAACTACTATCATCGGTAACGACCTG
GCTGGCAGGACCTTCGTGGACAAAACACAGAACCCTCATGTCTCTGCCCC
GCTTCAATCGTCCGAAGTGGGCGTTACCAAGTTCCTGGAGGGGGTCGTCC
CAGACTACAAGGGGCCCATGGCGCTGCACGACAAGGCGGGCCGCGTGCGC
ACCACCGTGGAACACGTGAGGGGTTGGTCGGACTATGTTTTGTGGGCGCC
CGTAGGCAATGATGGTATGGGCTACAAGAAGTTCGTCTGCCTGGAATCAG
GAGCAGTCTCCCGGCCCGTCTCGGTGGCAGGGGGCTCGGAGTGGTGGAGG
AGTGATCTGAGAGCAGTGAAGCAGTCGTGGAACTTGGGAACTCCTTTTGA
GAAGACATGCAGGTTGAGAGGCCAAAGAAAGAAGTAA

protein sequence of rna2016

>rna2016-protein ID=rna2016-protein|Name=rna2016|organism=Nannochloropsis gaditana|type=polypeptide|length=754bp
MGQDQSISNQQYPSSSYPGAGRSSGGTNGPGNRPRPTPHVSPFQQPAYNS
QPGGGRTTRTVNTEPGAFEIPGHQRSTGQIRAQVRIPAGVRPGQHFAVLL
EGQQVMVRCPDRASPGDLIAIEFQASTFIVQVPEGVQPGQTFDVMVRGAR
QRVTCPDGVRPGMQIRFSLPPASDGGGLGGAGGPGGSTGGGTGSSNTSGP
SPFEKLYEVVVPQGVRPGEPFVLLADGQRVTVTCPVDARPNQKIRFKLPI
VPTNEQLQAYEMRYNKDGWVRCLGQDVKFHWFRVDGSNREQGGTANAVVG
GVGGSLGRPKNGKFSIENTAFVRAFKGPPQSPDLVLLPPSEVSIDTTVPG
TRLNFHTLSHGAQLPFDKKIEFFREHCNSLRTPWERGHMEIRVRRAHLLA
DSLMAFEGISTANMRKIFRFEFLGEPGIDAGGVAREWYDQVTDALFNPDF
GLFQYSGVDQMCMQISGASGLVEPQHHRYFRFLGRLLGKALLDGQIVRHH
LVRPVIKHILGWPVVLADMEYLDAETLQNLGKLQEMDPSVLGDLCLDFTV
TENFLGQSHTVELVPGGANLTLGPENLDKYLEANLRFRLCDRVKTQLREL
LLGFYECMPEALLSIFDFQQLELLLCGMPNLDIEDWLRNTGYGGEFARLG
AQHRVVQWFWEVVRNDFDQEQRARLLQFTTGTSGVPAQGFAFLQGNDGNI
RKFTINSISLDQSVFPRAHTCFNRIDLPLYKTKKDLKERLSLAIQMESSG
FSIE

mRNA from alignment at CM002458.1:705999..708263-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2016 ID=rna2016|Name=rna2016|organism=Nannochloropsis gaditana|type=mRNA|length=2265bp|location=Sequence derived from alignment at CM002458.1:705999..708263- (Nannochloropsis gaditana)
ATGGGTCAAGATCAAAGCATTTCGAATCAGCAATATCCGTCTTCATCCTA
TCCTGGTGCAGGTCGCTCCTCGGGAGGGACTAATGGCCCTGGTAATAGAC
CAAGACCTACTCCACATGTGTCCCCATTTCAGCAGCCCGCGTACAATTCG
CAACCAGGAGGAGGTCGCACAACTCGGACGGTGAACACAGAACCGGGGGC
ATTTGAAATTCCTGGCCATCAGCGATCAACAGGTCAAATTCGGGCGCAAG
TGCGGATACCGGCTGGGGTTCGACCTGGGCAGCACTTTGCCGTCCTGCTG
GAGGGTCAACAGGTTATGGTCCGTTGCCCTGACCGCGCGTCTCCCGGCGA
TCTGATCGCCATCGAATTTCAAGCTTCCACATTCATCGTGCAAGTGCCAG
AGGGGGTACAGCCTGGCCAGACTTTCGACGTGATGGTCCGAGGGGCGAGG
CAACGGGTCACGTGCCCGGACGGTGTCAGACCAGGGATGCAGATTCGATT
CTCTCTCCCTCCCGCCTCTGACGGCGGGGGTTTGGGAGGAGCAGGGGGGC
CTGGGGGAAGCACAGGTGGTGGAACGGGATCTTCAAACACGTCGGGACCA
TCTCCTTTCGAGAAATTGTACGAGGTGGTGGTGCCGCAAGGTGTGCGGCC
AGGGGAGCCCTTCGTCCTCTTGGCGGACGGCCAGCGCGTGACCGTCACCT
GCCCGGTGGACGCGCGCCCAAACCAAAAGATACGCTTCAAGCTACCCATT
GTCCCCACCAATGAGCAGCTCCAGGCGTACGAGATGCGGTATAACAAGGA
CGGGTGGGTGCGGTGCCTGGGCCAGGACGTGAAGTTCCACTGGTTCAGGG
TGGACGGCTCGAACCGGGAGCAGGGTGGCACTGCCAATGCCGTTGTGGGA
GGTGTCGGAGGATCTCTCGGAAGACCAAAGAACGGGAAATTTTCCATTGA
GAACACGGCCTTCGTACGGGCATTCAAAGGGCCTCCCCAGTCGCCAGACC
TCGTGCTGCTCCCGCCCTCGGAGGTCTCTATCGACACGACGGTGCCAGGC
ACCCGTTTGAACTTCCACACTCTCTCCCACGGGGCCCAACTTCCTTTCGA
CAAGAAGATTGAATTCTTCCGTGAGCACTGCAACAGCCTCCGGACTCCGT
GGGAGAGGGGACACATGGAGATTAGGGTGCGACGCGCGCACCTCCTGGCT
GACTCCTTGATGGCCTTCGAGGGGATCAGCACAGCCAACATGCGAAAGAT
TTTCCGCTTTGAGTTTTTGGGGGAGCCGGGCATTGACGCCGGGGGAGTGG
CTCGGGAATGGTACGACCAGGTGACTGACGCGCTCTTCAATCCAGACTTC
GGGCTCTTCCAATACAGCGGAGTGGATCAGATGTGCATGCAGATCAGTGG
GGCGTCCGGCTTGGTCGAGCCGCAACACCACCGGTACTTCCGTTTTCTGG
GTCGTTTGTTGGGGAAGGCCCTGTTGGACGGACAGATCGTGCGGCACCAC
CTGGTGCGGCCGGTGATCAAGCACATCTTGGGCTGGCCCGTGGTCCTGGC
GGACATGGAGTACCTGGACGCGGAGACGCTGCAGAATCTGGGCAAACTCC
AAGAGATGGATCCCTCCGTGCTTGGAGATCTGTGCCTGGATTTTACCGTC
ACCGAGAACTTCCTAGGACAGTCCCATACGGTGGAGCTGGTCCCTGGCGG
CGCTAATTTGACCCTGGGGCCAGAAAATCTCGACAAGTACTTGGAGGCGA
ACCTGCGCTTTCGCCTGTGCGATAGGGTCAAGACTCAGCTCCGAGAATTG
CTGCTGGGCTTTTACGAGTGCATGCCTGAGGCTCTTTTGTCTATATTCGA
CTTTCAGCAGCTAGAGTTGCTGCTCTGCGGCATGCCCAATCTGGACATAG
AGGACTGGTTAAGGAATACGGGCTATGGTGGGGAATTTGCAAGATTGGGT
GCCCAGCATCGGGTGGTGCAATGGTTTTGGGAGGTAGTTCGCAACGACTT
CGATCAGGAGCAGCGGGCGCGACTTCTTCAGTTTACGACAGGCACGTCAG
GGGTACCTGCGCAGGGATTTGCATTTTTGCAAGGGAACGATGGCAATATC
CGGAAGTTCACCATCAATAGCATCTCACTCGATCAATCAGTGTTCCCTCG
GGCGCACACATGTTTCAATCGCATTGATCTCCCTTTGTATAAGACGAAAA
AAGACCTGAAGGAACGCTTATCGCTTGCGATTCAAATGGAGTCATCGGGC
TTCTCGATAGAGTAA

Coding sequence (CDS) from alignment at CM002458.1:705999..708263-

>rna2016 ID=rna2016|Name=rna2016|organism=Nannochloropsis gaditana|type=CDS|length=2265bp|location=Sequence derived from alignment at CM002458.1:705999..708263- (Nannochloropsis gaditana)
ATGGGTCAAGATCAAAGCATTTCGAATCAGCAATATCCGTCTTCATCCTA
TCCTGGTGCAGGTCGCTCCTCGGGAGGGACTAATGGCCCTGGTAATAGAC
CAAGACCTACTCCACATGTGTCCCCATTTCAGCAGCCCGCGTACAATTCG
CAACCAGGAGGAGGTCGCACAACTCGGACGGTGAACACAGAACCGGGGGC
ATTTGAAATTCCTGGCCATCAGCGATCAACAGGTCAAATTCGGGCGCAAG
TGCGGATACCGGCTGGGGTTCGACCTGGGCAGCACTTTGCCGTCCTGCTG
GAGGGTCAACAGGTTATGGTCCGTTGCCCTGACCGCGCGTCTCCCGGCGA
TCTGATCGCCATCGAATTTCAAGCTTCCACATTCATCGTGCAAGTGCCAG
AGGGGGTACAGCCTGGCCAGACTTTCGACGTGATGGTCCGAGGGGCGAGG
CAACGGGTCACGTGCCCGGACGGTGTCAGACCAGGGATGCAGATTCGATT
CTCTCTCCCTCCCGCCTCTGACGGCGGGGGTTTGGGAGGAGCAGGGGGGC
CTGGGGGAAGCACAGGTGGTGGAACGGGATCTTCAAACACGTCGGGACCA
TCTCCTTTCGAGAAATTGTACGAGGTGGTGGTGCCGCAAGGTGTGCGGCC
AGGGGAGCCCTTCGTCCTCTTGGCGGACGGCCAGCGCGTGACCGTCACCT
GCCCGGTGGACGCGCGCCCAAACCAAAAGATACGCTTCAAGCTACCCATT
GTCCCCACCAATGAGCAGCTCCAGGCGTACGAGATGCGGTATAACAAGGA
CGGGTGGGTGCGGTGCCTGGGCCAGGACGTGAAGTTCCACTGGTTCAGGG
TGGACGGCTCGAACCGGGAGCAGGGTGGCACTGCCAATGCCGTTGTGGGA
GGTGTCGGAGGATCTCTCGGAAGACCAAAGAACGGGAAATTTTCCATTGA
GAACACGGCCTTCGTACGGGCATTCAAAGGGCCTCCCCAGTCGCCAGACC
TCGTGCTGCTCCCGCCCTCGGAGGTCTCTATCGACACGACGGTGCCAGGC
ACCCGTTTGAACTTCCACACTCTCTCCCACGGGGCCCAACTTCCTTTCGA
CAAGAAGATTGAATTCTTCCGTGAGCACTGCAACAGCCTCCGGACTCCGT
GGGAGAGGGGACACATGGAGATTAGGGTGCGACGCGCGCACCTCCTGGCT
GACTCCTTGATGGCCTTCGAGGGGATCAGCACAGCCAACATGCGAAAGAT
TTTCCGCTTTGAGTTTTTGGGGGAGCCGGGCATTGACGCCGGGGGAGTGG
CTCGGGAATGGTACGACCAGGTGACTGACGCGCTCTTCAATCCAGACTTC
GGGCTCTTCCAATACAGCGGAGTGGATCAGATGTGCATGCAGATCAGTGG
GGCGTCCGGCTTGGTCGAGCCGCAACACCACCGGTACTTCCGTTTTCTGG
GTCGTTTGTTGGGGAAGGCCCTGTTGGACGGACAGATCGTGCGGCACCAC
CTGGTGCGGCCGGTGATCAAGCACATCTTGGGCTGGCCCGTGGTCCTGGC
GGACATGGAGTACCTGGACGCGGAGACGCTGCAGAATCTGGGCAAACTCC
AAGAGATGGATCCCTCCGTGCTTGGAGATCTGTGCCTGGATTTTACCGTC
ACCGAGAACTTCCTAGGACAGTCCCATACGGTGGAGCTGGTCCCTGGCGG
CGCTAATTTGACCCTGGGGCCAGAAAATCTCGACAAGTACTTGGAGGCGA
ACCTGCGCTTTCGCCTGTGCGATAGGGTCAAGACTCAGCTCCGAGAATTG
CTGCTGGGCTTTTACGAGTGCATGCCTGAGGCTCTTTTGTCTATATTCGA
CTTTCAGCAGCTAGAGTTGCTGCTCTGCGGCATGCCCAATCTGGACATAG
AGGACTGGTTAAGGAATACGGGCTATGGTGGGGAATTTGCAAGATTGGGT
GCCCAGCATCGGGTGGTGCAATGGTTTTGGGAGGTAGTTCGCAACGACTT
CGATCAGGAGCAGCGGGCGCGACTTCTTCAGTTTACGACAGGCACGTCAG
GGGTACCTGCGCAGGGATTTGCATTTTTGCAAGGGAACGATGGCAATATC
CGGAAGTTCACCATCAATAGCATCTCACTCGATCAATCAGTGTTCCCTCG
GGCGCACACATGTTTCAATCGCATTGATCTCCCTTTGTATAAGACGAAAA
AAGACCTGAAGGAACGCTTATCGCTTGCGATTCAAATGGAGTCATCGGGC
TTCTCGATAGAGTAA

Synonyms

Publications