rna2015, rna2015 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2015
Unique Name	rna2015
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1268
Alignment location	CM002458.1:704349..705535 -

Link to JBrowse

Properties


Property Name	Value
Product	Glycoside hydrolase-type carbohydrate-binding protein
Orig transcript id	gnl\|cribi\|Naga_100002g7.4920.mrna
Orig protein id	gnl\|cribi\|Naga_100002g7.4920
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:704349..705535 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g7	gene1926	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2015	rna2015-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28801.1	cds2007	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:704349..705535-
coding sequence from alignment at CM002458.1:704349..705535-

mRNA sequence

>rna2015 ID=rna2015|Name=rna2015|organism=Nannochloropsis gaditana|type=mRNA|length=1268bp
ACGCGAAATGCAACGCCTCCATTTGCCACAAAAACAGGCTATGATTTCGT
CGCCTCATATTTTTTTGGCCCTGTTCTTATTTTTGTCCGGTCGGGTGGCC
ATGGCTTTTAGCTCTATTCGTCGGCCCTCCCGCACAAATTCTCGCCCGTG
GCTCTGCATGACAACGACAAACCTCCAAGATGAGCTAACTGTAGCAATCA
GTACGGCTCGTAAAGCTGGCATCGCAGCAAAAAGGCTGCAAAAAACTTTG
ATTGAAACGAAACGTGCGGCGATCGAGAAATCCGATAGCAGCCCCGTCAC
GATTGCGGATTATACCGTACAAGCTCTAGTGATTGCGGCCCTTCGTGTCT
CCTTTCCTGGGGACCAAGTGGTGGCCGAAGAGACTTCAGGCGTACTTCGG
CAAGATCCAGTCGCCTTAGCAGCTGTTATGGATGTTTTCCGGCTCGAAAG
TGGCGAAACATACGTCACTGAGGAGAGTTTGTGTGAGATTCTTGACCATG
GCCGGCTCCCGGGGCCTCGCACGTGGATCTTGGACCCCATCGATGGAACG
AAAGGCTTTATCCGTGGTGAGCATTTTTGTGTGGCCCTGGGCATGGCGCT
GGAGGGCAAGCCCGTGCTGGGCGTGCTCGCGTGCCCAAATGTCCCCTCCT
CGACCAGCCGCAGCAACGGGGCCTCTCTTGGCGATGGCTGTGTCTTCTTT
GCTCTGAAGGGCCAAGGGGCCTTCATGCTGCCACTGGAAGCAAATGGAAG
TTCTCTGGCAGAGGAAATCACCCATGCCGTACCCATTCGCGTCAGTCCAG
CGACTGCGGGGGAGGAGGCGCGCTTCTTCGAGTCGGTGGAGACCGCCCAT
TCCTCCCACTCGGTGGGTGCCGAGGCGGCAAGAGCGCTCGGCGTAATAAC
TCCTCCTGTGCAGATGGACAGTCAATGCAAATACGGACTCCTCGCGCGGG
GGGAAGGTGAGGTGATGCTGCGCTTGCCCCGTTTGGGCTACATAGAGAAT
ATCTGGGACCACGCCCCTGCCTACGTAGTAATAACGGAGGCAGGGGGGCG
GGTCACAGACACGGAGGGAAAAGAGCTGGATTTCGCAGAGGGCTGCCGTG
CAGGGACCGGGAAAATGGGCCGGGAGGTGACGGGGATCGTCACCACGAAC
GGGCGGCTGCATGATCTCGTCGTCGAGTCCCTCAGGTCCTTCTGGCCGCC
GCGAGGGGGATGACGCTTTCATCCGTGTAGTACAAAACATCATTTACAAA
AAAGTTTTTATTCCGGCG

protein sequence of rna2015

>rna2015-protein ID=rna2015-protein|Name=rna2015|organism=Nannochloropsis gaditana|type=polypeptide|length=328bp
MLKYALIAILAVMGSLSDAFLLPATSSRESATALMAGKATLDTLKRVVLT
DDVTGHSATVHLHGGCVTSYKAPHEVLGIRKDAAFTGEKPIAGGLQICWP
QFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFEL
LLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDL
AGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVR
TTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEWWR
SDLRAVKQSWNLGTPFEKTCRLRGQRKK

mRNA from alignment at CM002458.1:704349..705535-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2015 ID=rna2015|Name=rna2015|organism=Nannochloropsis gaditana|type=mRNA|length=1187bp|location=Sequence derived from alignment at CM002458.1:704349..705535- (Nannochloropsis gaditana)
ATGTTGAAATACGCTCTGATTGCCATCTTGGCTGTTATGGGTAGCCTAAG
TGATGCATTTTTGCTTCCTGCGACGAGCTCCAGGGAGTCCGCTACAGCTC
TAATGGCTGGTAAGGCCACCTTGGACACATTGAAGCGGGTGGTTCTCACA
GACGATGTCACAGGTCACTCTGCTACCGTGCACCTGCATGGTGGCTGTGT
CACCAGCTACAAAGCCCCGCATGAAGTGCTCGGAATCCGAAAGGACGCCG
CATTTACAGGGGAAAAGCCCATTGCGGGTGGCTTACAAATCTGTTGGCCG
CAATTTGGGCCTGGGGCGATTCAGGTAAAAATAGATGATCATACATATGT
GTTTTTAGTAGCCTGTTCATTGTCGTGTTAGCCTCGCTTCCTTTTTATGC
ACTATTTCAAATACTATTCCATCTTCTGTTTCACAACGTGGTATCCCACA
TATATCAGCAACATGGTTTTGCCCGCAACTTGCCTTGGGAGGTCTCTGCT
CAGTCTGACTCGGAGCCCGAGGTAACGCTGGTCTTGAAAGAGTCGGCGGA
AACACGTAAGATCTGGGACCAGGCTTTCGAGCTCCTCTTGACCGTGCGTC
TGGAGGGAGACCACTTGCTGACTCGCCTAACGGCGAAGAACACGGGCTCA
ACGCCCTGGGAGTTCACCAGCGCCTTGCACAGCTACTATAGCGTCTCCGA
CGTCGCCAAAACTACTATCATCGGTAACGACCTGGCTGGCAGGACCTTCG
TGGACAAAACACAGAACCCTCATGTCTCTGCCCCGCTTCAATCGTCCGAA
GTGGGCGTTACCAAGTTCCTGGAGGGGGTCGTCCCAGACTACAAGGGGCC
CATGGCGCTGCACGACAAGGCGGGCCGCGTGCGCACCACCGTGGAACACG
TGAGGGGTTGGTCGGACTATGTTTTGTGGGCGCCCGTAGGCAATGATGGT
ATGGGCTACAAGAAGTTCGTCTGCCTGGAATCAGGAGCAGTCTCCCGGCC
CGTCTCGGTGGCAGGGGGCTCGGAGTGGGTGGGGGAAATGAAGATCAGCT
CCCGCGCGGGCTGAGTCCTGGATGCGCGTGGGGTACGGAGCTAGTGGAGG
AGTGATCTGAGAGCAGTGAAGCAGTCGTGGAACTTGGGAACTCCTTTTGA
GAAGACATGCAGGTTGAGAGGCCAAAGAAAGAAGTAA

Coding sequence (CDS) from alignment at CM002458.1:704349..705535-

>rna2015 ID=rna2015|Name=rna2015|organism=Nannochloropsis gaditana|type=CDS|length=2961bp|location=Sequence derived from alignment at CM002458.1:704349..705535- (Nannochloropsis gaditana)
TGGAGGAGTGATCTGAGAGCAGTGAAGCAGTCGTGGAACTTGGGAACTCC
TTTTGAGAAGACATGCAGGTTGAGAGGCCAAAGAAAGAAGTAACAACATG
GTTTTGCCCGCAACTTGCCTTGGGAGGTCTCTGCTCAGTCTGACTCGGAG
CCCGAGGTAACGCTGGTCTTGAAAGAGTCGGCGGAAACACGTAAGATCTG
GGACCAGGCTTTCGAGCTCCTCTTGACCGTGCGTCTGGAGGGAGACCACT
TGCTGACTCGCCTAACGGCGAAGAACACGGGCTCAACGCCCTGGGAGTTC
ACCAGCGCCTTGCACAGCTACTATAGCGTCTCCGACGTCGCCAAAACTAC
TATCATCGGTAACGACCTGGCTGGCAGGACCTTCGTGGACAAAACACAGA
ACCCTCATGTCTCTGCCCCGCTTCAATCGTCCGAAGTGGGCGTTACCAAG
TTCCTGGAGGGGGTCGTCCCAGACTACAAGGGGCCCATGGCGCTGCACGA
CAAGGCGGGCCGCGTGCGCACCACCGTGGAACACGTGAGGGGTTGGTCGG
ACTATGTTTTGTGGGCGCCCGTAGGCAATGATGGTATGGGCTACAAGAAG
TTCGTCTGCCTGGAATCAGGAGCAGTCTCCCGGCCCGTCTCGGTGGCAGG
GGGCTCGGAGTGGATGTTGAAATACGCTCTGATTGCCATCTTGGCTGTTA
TGGGTAGCCTAAGTGATGCATTTTTGCTTCCTGCGACGAGCTCCAGGGAG
TCCGCTACAGCTCTAATGGCTGGTAAGGCCACCTTGGACACATTGAAGCG
GGTGGTTCTCACAGACGATGTCACAGGTCACTCTGCTACCGTGCACCTGC
ATGGTGGCTGTGTCACCAGCTACAAAGCCCCGCATGAAGTGCTCGGAATC
CGAAAGGACGCCGCATTTACAGGGGAAAAGCCCATTGCGGGTGGCTTACA
AATCTGTTGGCCGCAATTTGGGCCTGGGGCGATTCAGTGGAGGAGTGATC
TGAGAGCAGTGAAGCAGTCGTGGAACTTGGGAACTCCTTTTGAGAAGACA
TGCAGGTTGAGAGGCCAAAGAAAGAAGTAACAACATGGTTTTGCCCGCAA
CTTGCCTTGGGAGGTCTCTGCTCAGTCTGACTCGGAGCCCGAGGTAACGC
TGGTCTTGAAAGAGTCGGCGGAAACACGTAAGATCTGGGACCAGGCTTTC
GAGCTCCTCTTGACCGTGCGTCTGGAGGGAGACCACTTGCTGACTCGCCT
AACGGCGAAGAACACGGGCTCAACGCCCTGGGAGTTCACCAGCGCCTTGC
ACAGCTACTATAGCGTCTCCGACGTCGCCAAAACTACTATCATCGGTAAC
GACCTGGCTGGCAGGACCTTCGTGGACAAAACACAGAACCCTCATGTCTC
TGCCCCGCTTCAATCGTCCGAAGTGGGCGTTACCAAGTTCCTGGAGGGGG
TCGTCCCAGACTACAAGGGGCCCATGGCGCTGCACGACAAGGCGGGCCGC
GTGCGCACCACCGTGGAACACGTGAGGGGTTGGTCGGACTATGTTTTGTG
GGCGCCCGTAGGCAATGATGGTATGGGCTACAAGAAGTTCGTCTGCCTGG
AATCAGGAGCAGTCTCCCGGCCCGTCTCGGTGGCAGGGGGCTCGGAGTGG
ATGTTGAAATACGCTCTGATTGCCATCTTGGCTGTTATGGGTAGCCTAAG
TGATGCATTTTTGCTTCCTGCGACGAGCTCCAGGGAGTCCGCTACAGCTC
TAATGGCTGGTAAGGCCACCTTGGACACATTGAAGCGGGTGGTTCTCACA
GACGATGTCACAGGTCACTCTGCTACCGTGCACCTGCATGGTGGCTGTGT
CACCAGCTACAAAGCCCCGCATGAAGTGCTCGGAATCCGAAAGGACGCCG
CATTTACAGGGGAAAAGCCCATTGCGGGTGGCTTACAAATCTGTTGGCCG
CAATTTGGGCCTGGGGCGATTCAGTGGAGGAGTGATCTGAGAGCAGTGAA
GCAGTCGTGGAACTTGGGAACTCCTTTTGAGAAGACATGCAGGTTGAGAG
GCCAAAGAAAGAAGTAACAACATGGTTTTGCCCGCAACTTGCCTTGGGAG
GTCTCTGCTCAGTCTGACTCGGAGCCCGAGGTAACGCTGGTCTTGAAAGA
GTCGGCGGAAACACGTAAGATCTGGGACCAGGCTTTCGAGCTCCTCTTGA
CCGTGCGTCTGGAGGGAGACCACTTGCTGACTCGCCTAACGGCGAAGAAC
ACGGGCTCAACGCCCTGGGAGTTCACCAGCGCCTTGCACAGCTACTATAG
CGTCTCCGACGTCGCCAAAACTACTATCATCGGTAACGACCTGGCTGGCA
GGACCTTCGTGGACAAAACACAGAACCCTCATGTCTCTGCCCCGCTTCAA
TCGTCCGAAGTGGGCGTTACCAAGTTCCTGGAGGGGGTCGTCCCAGACTA
CAAGGGGCCCATGGCGCTGCACGACAAGGCGGGCCGCGTGCGCACCACCG
TGGAACACGTGAGGGGTTGGTCGGACTATGTTTTGTGGGCGCCCGTAGGC
AATGATGGTATGGGCTACAAGAAGTTCGTCTGCCTGGAATCAGGAGCAGT
CTCCCGGCCCGTCTCGGTGGCAGGGGGCTCGGAGTGGATGTTGAAATACG
CTCTGATTGCCATCTTGGCTGTTATGGGTAGCCTAAGTGATGCATTTTTG
CTTCCTGCGACGAGCTCCAGGGAGTCCGCTACAGCTCTAATGGCTGGTAA
GGCCACCTTGGACACATTGAAGCGGGTGGTTCTCACAGACGATGTCACAG
GTCACTCTGCTACCGTGCACCTGCATGGTGGCTGTGTCACCAGCTACAAA
GCCCCGCATGAAGTGCTCGGAATCCGAAAGGACGCCGCATTTACAGGGGA
AAAGCCCATTGCGGGTGGCTTACAAATCTGTTGGCCGCAATTTGGGCCTG
GGGCGATTCAG

Synonyms

Publications