EWM28801.1, cds2007 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|585111224|gb|EWM28801.1| (Glycoside hydrolase-type carbohydrate-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0 Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0 Query: 1 MLKYALIAILAVMGSLSDAFLLPATSSRESATALMAGKATLDTLKRVVLTDDVTGHSATVHLHGGCVTSYKAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEWWRSDLRAVKQSWNLGTPFEKTCRLRGQRKK 328 MLKYALIAILAVMGSLSDAFLLPATSSRESATALMAGKATLDTLKRVVLTDDVTGHSATVHLHGGCVTSYKAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEWWRSDLRAVKQSWNLGTPFEKTCRLRGQRKK Sbjct: 1 MLKYALIAILAVMGSLSDAFLLPATSSRESATALMAGKATLDTLKRVVLTDDVTGHSATVHLHGGCVTSYKAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEWWRSDLRAVKQSWNLGTPFEKTCRLRGQRKK 328
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|551601563|ref|XP_005782405.1| (hypothetical protein EMIHUDRAFT_434460 [Emiliania huxleyi CCMP1516] >gi|485635294|gb|EOD29976.1| hypothetical protein EMIHUDRAFT_434460 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 216.853 bits (551), Expect = 1.223e-65 Identity = 117/264 (44.32%), Postives = 154/264 (58.33%), Query Frame = 0 Query: 44 LKRVVLTDDVTGHSATVHLHGGCVTSY-KAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEWWRSDLRAV 306 LK V L++ G S TV+ G C+TSY K +VL +R DA G KPI+GG+ CWPQFGPGAIQQHGFARNL W V QSDS +V + L ESA T +W AF+L +V LE D L T NT S P FT ALH+Y+S D+ K I AG T++DK Q+P S + + ++ V G + L + A T+++ GWSD V+W+P G++GMGYK FVC+ES + PV + G E+W + V Sbjct: 14 LKTVSLSN-AAGDSVTVYTFGACITSYVKGGTDVLAVRPDAKLDGSKPISGGIPFCWPQFGPGAIQQHGFARNLDWTVVEQSDS--KVVMELTESAYTMDMWPHAFKLQYSVTLEDDRLATDFCVTNTDSKPLSFTGALHTYWSCDDIDKVAIKAPAFAGATYLDKMQSPPADVKSASDTISIGAPVDSVYAGVSGDVVL-EGAHASPLTIKNSVGWSDTVVWSPYGDEGMGYKNFVCVESAQAATPVKLEPG-EYWTGAMEVV 272
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|551536772|ref|XP_005757053.1| (hypothetical protein EMIHUDRAFT_446641 [Emiliania huxleyi CCMP1516] >gi|485604213|gb|EOD04624.1| hypothetical protein EMIHUDRAFT_446641 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 216.853 bits (551), Expect = 1.839e-65 Identity = 117/264 (44.32%), Postives = 154/264 (58.33%), Query Frame = 0 Query: 44 LKRVVLTDDVTGHSATVHLHGGCVTSY-KAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEWWRSDLRAV 306 LK V L++ G S TV+ G C+TSY K +VL +R DA G KPI+GG+ CWPQFGPGAIQQHGFARNL W V QSDS +V + L ESA T +W AF+L +V LE D L T NT S P FT ALH+Y+S D+ K I AG T++DK Q+P S + + ++ V G + L + A T+++ GWSD V+W+P G++GMGYK FVC+ES + PV + G E+W + V Sbjct: 27 LKTVSLSN-AAGDSVTVYTFGACITSYVKGGTDVLAVRPDAKLDGSKPISGGIPFCWPQFGPGAIQQHGFARNLDWTVVEQSDS--KVVMELTESAYTMDMWPHAFKLQYSVTLEDDRLATDFCVTNTDSKPLSFTGALHTYWSCDDIDKVAIKAPAFAGATYLDKMQSPPADVKSASDTISIGAPVDSVYAGVSGDVVL-EGAHASPLTIKNSVGWSDTVVWSPYGDEGMGYKNFVCVESAQAATPVKLEPG-EYWTGAMEVV 285
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|676391527|ref|XP_009039041.1| (hypothetical protein AURANDRAFT_4661, partial [Aureococcus anophagefferens] >gi|323450284|gb|EGB06166.1| hypothetical protein AURANDRAFT_4661, partial [Aureococcus anophagefferens]) HSP 1 Score: 193.356 bits (490), Expect = 1.111e-56 Identity = 108/248 (43.55%), Postives = 148/248 (59.68%), Query Frame = 0 Query: 54 TGHSATVHLHGGCVTSYK--APHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGS-TPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEW 298 +G SA ++G VTSYK + E + +R DA G KPI+GGL C+PQFGPGAIQQHGFARN+ W++ S VT L SA TR++WD+ F + V L L T++T NTGS ++F +ALHSY+ VSD+ T+I G+ G+TF+DK Q+P + V + + V P+ L DK T+++ GW D VLW+P G++GMGYK F+C+ES A PVS+A G W Sbjct: 7 SGASAKAFVYGADVTSYKDASGTEWIAVRPDAKMDGSKPISGGLSHCFPQFGPGAIQQHGFARNVDWDIVKTEGS--SVTFRLAPSAYTREMWDEPFVVDFEVALSAASLDTKMTVTNTGSGDSFDFQAALHSYFDVSDINATSIAGS-FKGKTFLDKMQDPPKETKETRDVITVGEEYDRVYKGSNDPV-LKDKGKGKALTIDNKAGWKDTVLWSPYGDEGMGYKNFLCVESVAFD-PVSLAAGENW 249
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|223994089|ref|XP_002286728.1| (aldose-1-epimerase, partial [Thalassiosira pseudonana CCMP1335] >gi|220978043|gb|EED96369.1| aldose-1-epimerase, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 193.741 bits (491), Expect = 1.452e-56 Identity = 109/275 (39.64%), Postives = 153/275 (55.64%), Query Frame = 0 Query: 27 SRESATALMAGKATLDTLKRVVLTDDVTGHSATVHLHGGCVTSY-KAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPM--ALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEW 298 S ++ TA AG T D V + G ++ ++L+GG VTSY K E + +R DA G KPI+GGL CWPQFGPG IQQHGFARN+ W V + D+ L + S T+++WD+ F +V LE D L T++ +N G ++F +ALHSY++VS + +I G+ AG+ F++K +Q+ E V E Y G L DK +V + G+ D VLW P GN+GMGY FVC+ES PV++AGG+ W Sbjct: 1 SADAETASSAGLMTNDDGLEYVRLSNAAGDTSDIYLYGGVVTSYVKGGQEYIAVRPDAKMDGSKPISGGLSHCWPQFGPGEIQQHGFARNVNWTVKSMDDT--SCVLEMAPSDYTKEMWDKEFLCTFSVNLEDDQLSTKMFVENKGEESFDFQAALHSYFTVSALENLSIAGS-FAGKEFLNKMVG---DGEMQTEERDVITISEEYDRVYTGVNDPVLQDKGTGKSLSVLNTAGYEDTVLWNPYGNEGMGYNNFVCVESVKFD-PVTLAGGASW 268
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|1210511830|dbj|GAX29070.1| (hypothetical protein FisN_7Hh338 [Fistulifera solaris]) HSP 1 Score: 196.438 bits (498), Expect = 1.919e-56 Identity = 105/248 (42.34%), Postives = 150/248 (60.48%), Query Frame = 0 Query: 54 TGHSATVHLHGGCVTSY-KAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKG--PMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEW 298 +G S+ V+L+G CVTSY + E + +R DA G KPI+GGL CWPQFGPGAIQQHGFARN+ W V++ +DS V LV++ S T+++WD+ F+ TV L+ D L T++ +N G ++F +ALHSY++VS + K I G+ AG+ F++K +Q+ + V E YKG L D V + +GW+D V+W+P GN+GMGY FVC+ES PV++ GG W Sbjct: 116 SGSSSQVYLYGACVTSYIQDGTEFIAVRPDAKMDGSKPISGGLSHCWPQFGPGAIQQHGFARNVNWSVASMTDS--SVELVMEPSDYTKEMWDKQFKCTFTVTLQEDQLDTKMWVENKGDDSFDFQAALHSYFAVSSLDKLEISGS-FAGKEFLNKLVGD--GGEMQTEDREVITISEEYDRVYKGVNDPVLKDAGTGKSLAVLNTKGWADTVIWSPYGNEGMGYNNFVCVESVKFD-PVTLNGGETW 357
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|298708486|emb|CBJ30610.1| (conserved carbohydrate binding protein [Ectocarpus siliculosus]) HSP 1 Score: 192.971 bits (489), Expect = 7.670e-56 Identity = 105/271 (38.75%), Postives = 155/271 (57.20%), Query Frame = 0 Query: 30 SATALMAGKATLDT-LKRVVLTDDVTGHSATVHLHGGCVTSYKAP-HEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEW 298 S A MA + T ++ LK++ ++ SA V GGCVTS+K ++ L +R DA G KPI+GGL C+PQFGPG IQQHGF RNL WEV +D V+L L ++ ET +W FE + V L+G L T L NTGS ++F +ALHSY+ SD+ K TI L G ++++K ++P + +++ +++ ++ V G ++++D V + GW+D V+W P GN+GMG FVC+ES V +A G W Sbjct: 36 STPARMATEGTNESGLKKLTISSG--DASAEVFTLGGCVTSFKVKDYDYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDS--VSLKLSDNEETMAMWPHPFECVYKVALDGTTLQTELAVTNTGSEDFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDVSINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGE-KLAAGKTW 301
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|1210524705|dbj|GAX16605.1| (hypothetical protein FisN_7Lh338 [Fistulifera solaris]) HSP 1 Score: 193.356 bits (490), Expect = 1.347e-55 Identity = 108/273 (39.56%), Postives = 160/273 (58.61%), Query Frame = 0 Query: 29 ESATALMAGKATLDTLKRVVLTDDVTGHSATVHLHGGCVTSY-KAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPM--ALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEW 298 +SA+ L + L+ ++ V +G S+ V+L+G CVTSY + E + +R DA G KPI+GGL CWPQFGPGAIQQHGFARN+ W V++ +DS V LV++ S T+++WD+ F+ TV L+ D L T++ +N G ++F +ALHSY++VS + K I G+ AG+ F++K +Q+ + V E YKG + L D V + +GW+D V+W+P GN+ MGY FVC+ES PV++ G W Sbjct: 64 KSASGLQTNEGGLEYVQLV----HPSGSSSKVYLYGACVTSYIQDGTEFIAVRPDAKMDGSKPISGGLSHCWPQFGPGAIQQHGFARNVIWSVASMTDS--SVELVMEPSDYTKEMWDKPFKCTFTVTLQEDQLDTKMWVENKGDDSFDFQAALHSYFAVSSLDKLEISGS-FAGKEFLNKLVGD--GGEMQTEDREVITISEEYDRVYKGVIDPVLKDAGTGKSLAVLNTKGWADTVIWSPYGNEAMGYNNFVCVESVKFD-PVTLNSGETW 326
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|219110387|ref|XP_002176945.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411480|gb|EEC51408.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 191.045 bits (484), Expect = 9.420e-55 Identity = 117/279 (41.94%), Postives = 153/279 (54.84%), Query Frame = 0 Query: 25 TSSRESATALMAGKATLDTLKRVVLTDDVTGHSATVHLHGGCVTSYKAPH--EVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKG---PMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEW 298 T+ S T LM D L+ + L TG ++ V+L GG VTSY E + +R DA G KPI+GGL CWPQFGPGAIQQHGFARN+ W V SD+ L L S T+++WD+ F +V LE D L T++ +N G +F +ALHSY++VS + K I G+ AG+ F++K +Q+ E V E YKG P+ L D +V + GW D VLW P GN+GMGY FVC+ES PVS+ GGS W Sbjct: 63 TAEGSSKTGLMKNS---DGLEYIKLVHPDTGATSEVYLLGGVVTSYVDGDGTEFIAVRPDAKMDGSKPISGGLSHCWPQFGPGAIQQHGFARNVNWSVKDMSDT--SCVLELAPSEYTKEMWDKEFLCTFSVALEEDQLSTKMLVENKGVEALDFQAALHSYFTVSALDKLEIAGS-FAGKDFLNKLVGDE--GEMQTEEREVITITEEYDRVYKGVNDPI-LKDAGTGKSLSVLNNAGWEDTVLWNPFGNEGMGYNNFVCVESVKFD-PVSLDGGSSW 331
BLAST of EWM28801.1 vs. NCBI_GenBank
Match: gi|551666376|ref|XP_005835949.1| (hypothetical protein GUITHDRAFT_105052 [Guillardia theta CCMP2712] >gi|428180101|gb|EKX48969.1| hypothetical protein GUITHDRAFT_105052 [Guillardia theta CCMP2712]) HSP 1 Score: 191.815 bits (486), Expect = 6.452e-53 Identity = 105/249 (42.17%), Postives = 143/249 (57.43%), Query Frame = 0 Query: 54 TGHSATVHLHGGCVTSYKAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPW---EVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRT-TVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEW 298 +G SATV+ G VTSYKAPHEVL +R DA F G KPI+GG+ C+PQFGPG IQQHGFARNL W +VSA P VTL L E+ ET +W F+ V L+ + L L NT S PW+F +ALH+Y++VS++ K + G G +++ P + K ++ G + L D+ ++ T+ ++ GW D VLW P GN+GMGYK F C+ES ++P +A G W Sbjct: 296 SGSSATVYPFGATVTSYKAPHEVLFVRPDAKFDGSKPISGGIPHCFPQFGPGKIQQHGFARNLVWNVKDVSADEPDMPSVTLELTETEETMAMWPNKFKCTYVVGLDEEKLNCELRVTNTDSKPWDFQAALHTYFAVSNIDKCEVRG-AFKGSEHLNRMDKPPSKTKESREAIRFDKEVDSCYEGVSGQVVLFDEVKPEQSVTIRNLAGWEDTVLWNPYGNEGMGYKNFACVESVKAAKPAVLAAGETW 543 The following BLAST results are available for this feature:
BLAST of EWM28801.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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