rna2010, rna2010 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2010
Unique Name	rna2010
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1538
Alignment location	CM002458.1:688780..690909 +

Link to JBrowse

Properties


Property Name	Value
Product	Meiosis-specific DEAD-box helicase
Orig transcript id	gnl\|cribi\|Naga_100002g175.4781.mrna
Orig protein id	gnl\|cribi\|Naga_100002g175.4781
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:688780..690909 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g175	gene1921	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2010	rna2010-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28662.1	cds2002	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:688780..690909+
coding sequence from alignment at CM002458.1:688780..690909+

mRNA sequence

>rna2010 ID=rna2010|Name=rna2010|organism=Nannochloropsis gaditana|type=mRNA|length=1538bp
ATGGAGTATTTCACAAATTCGAAGTTGTCACAGTCGCGCTCCGACCTGTT
AACGCCAGTAGGACGGCTTATCGACGACGCCACTTCGGAGACTTTAGTGA
CTCCTGATTGGTCCCTGAATTTGGCCGTTTGCGATGCAGTCAACAGCGAT
GACGAGTTTGTTGGTGAGCAAGCAATGCGGGCCTTTCGCCGCAAGCTCCG
GGAAGCCAACCCGAAGGTGCTCCAGCTAACGCTAACCTTGCTGGAGACTG
TGATCAAGAACGCGGACCAGCCAGGGCGTGAAAGTCGTTTCCATGCGCTT
GTTGGGAGCCCCGATTTCCTCGCGAAGATTTCGTCGTTGACAGACGGCAA
AAGAGGCTGGGAGGTTAAAGAACAGGCTTTAGCCCTGCTGCAGCAGTGGG
GGCTGTCATTTGAGAGCAGGCGGGATACGTTGGCGTTTTACTCAACTTAC
ATGGACCTGCGTCTACAAGGCGTCCAGTTTCCTAGGCTAGAAGCCTCGTC
GCCCATCTTCACTCCCCCGGCCCAGCCGTCTCCTGCCACGCTACCGGCTT
CGACCACTCCCACCTCGGAAGGTGTTGTAAATGCCGAGACAACGGAGATC
GACAGAGGTGTCCCCGCCTCGTTGCCATCAGCAGCACCTCGCGCAAGAAC
AGCAGACCGCGACCTGACCAAATTGCAGCAGGATCTTGGAGAAGTACGAG
AAAGGGCGCGCGCGTGTTTCGCGATGTTATCTCACAGCGAGGGCATTGAG
TCGGGGGATGAAGCTTTGGCCGAGGCCGTGGGTTTCTTGGAGGCGTGCAA
AGAGCGCTTAACAGAGGTGATAGAGGCGGGAATGGGAGGGGGGGAAGAGA
GTATGACACTCACAGAGGCGGTTCTGGAACTCGCATTGGAGGTGCACGAA
GAGGTGGTGGAGGTCCTCGGGGCTGAGAAATCCCATGCGGAGCTCCGAGG
TGGCGAAGGGAAAGGAGAGAATGAAGGTGCGAAGAGGGAGGGGAGGGCGG
AAACGGGTCGGACCGATGATTTGCTCGACTTCGATCACCATCCACCGCCC
GCCCCCATGCCGCGGCCCATTCCTACGCACCCGGACCTGACGGCAACGGG
AGGTGAGAATGAGGGCCAGGGCGGAGATGGCGCCCGAGTGACCCAATCGA
GCGACCCGTTGGACATATTTGAGGCACCTCCTGCTGCACGAGTTTGTGCA
CTCGGAGACGCCCAATCTTTAAGCCCGGCGGCTTTGAATGCCTTAGAGTT
GGACGATGACCGCGACCCGCCAGTGAAGTGACCTTACCTCGAACATTTGG
ATAAGTTACGAATACATATCAGGGATAGCAGAGAGACACGACACAAGAAA
TGTATAGATATTTTTGTAAAAGATAAGGTTGGAATCATAAATCAATTATC
AGTCAGTGAAGACACCTTTAAGGGCGTTGTATTCTGGGGGGGTATGGAGT
AAAGTATTCCACTCAAGCAAGACTATCAATTACTTGCGTGCCATTGTTTG
CCAGTAGAAATACGGGCCTTTGAGTGCAGTAATAGCCC

protein sequence of rna2010

>rna2010-protein ID=rna2010-protein|Name=rna2010|organism=Nannochloropsis gaditana|type=polypeptide|length=709bp
MSHIDNTGEKKEQQLPHTTSKLESSMISGPNREPYSQPLGFAVDLDRELG
GKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICR
LLQEDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELT
GDSAGMREVAASQIILTTPEKFDAVSRDWRDNLYLLGSVRLVLIDEAHFL
GEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDI
GRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEV
IGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRS
QQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQG
VVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIG
RAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAE
VCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIG
EYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGR
VMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVCNPVRKAEKRPLN
DLLKRVRFSKGLGIKKCTHPSHKAFVLVQACLGNLEIVDFTLKVSDNPMC
LISSVCAEE

mRNA from alignment at CM002458.1:688780..690909+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2010 ID=rna2010|Name=rna2010|organism=Nannochloropsis gaditana|type=mRNA|length=2130bp|location=Sequence derived from alignment at CM002458.1:688780..690909+ (Nannochloropsis gaditana)
ATGAGTCATATTGACAACacaggggaaaagaaagagcagcAGCTGCCCCA
CACAACCTCAAAATTGGAATCTTCAATGATTTCCGGACCCAACAGAGAGC
CTTACTCACAACCTTTGGGTTTTGCTGTTGACCTGGACCGAGAGCTTGGA
GGGAAATTTCGAAATTTATGGCCTTACCGCATCCTTAACGAGGTGCAAAG
TGCATTTTGGCCAGTGTGCTTCAACACTGATCACAACGTGGTCATTGCTG
CACCAACAGGTGTAGGTAAGACCATGGCCTTAGAGGCAGCTATTTGTCGT
CTTTTgcaagaggatgagggtaCGGGGAATGGGCGAAAGACTTGGAAAGC
TGTGTACGTCGCCCCTGTCAAGGCTCTATGTCAACAGCGCTTGGTAGACT
GGCAGCGGCGTTTCGAGACGAGATTCGGTCTAAAATGTGCCGAGCTGACC
GGCGACTCAGCAGGTATGCGCGAGGTGGCCGCTTCTCAGATTATCTTGAC
CACACCGGAGAAATTCGACGCGGTTTCGCGCGACTGGCGGGACAATCTCT
ACCTGCTGGGCTCCGTCCGCTTGGTTCTCATCGACGAAGCACATTTTCTG
GGAGAAGATCCGCGGGGTTCAGCCCTCGAGGCACTTATTTGTCGGCTCAG
GGTCATGAAATCCCACAAAGTGATCATGGATAAGGGCTTGCCTGCCTCCA
AGCTTCGCATCCTGGCCGCTTCTGCAACACTGCCAAATGTCGAGGACATA
GGAAGATGGCTAGAGGCACCCCCAGAGGCTACCTTCAACTTTGACTACAC
CCACCGACCCGTCCCTCTTGAAATTCACGTCCTCGGCTACGCAAATGCCA
GCAACCCTTTCCTATTTCAACGCACTCTAGAAGGCCGTGCACCGGAGGTG
ATCGGCCGATAttcggaggggaaggcgacaCTGGTCTTTTGCGGAAGCAA
AAAGGGAGCGGAGGCATTGGCTACTAAGCTTGCTGAAGCTGGAAGTGGAT
TGGGATTGGGCAACAAGCAGTTGGGAAGAGGCGGGATGCAAGGAAGGAGC
CAGCAGCGACTGGAAGCTGAGCGTTTTTCAAACATCCAGAATCATAAGCT
CAAAGACCTCCTTCTAACCTCAGATGGTGCGGTGGCCTTCCACCATGCGG
GTCTTACAGCCGAAGATAGGACATGTGTGGAGACCCTTTTCCAGCAAGGT
GTTGTTCGCACTCTCTGCTCAACCTCCACGCTTGCACAAGGAATCAACAG
TCCTGCCTTTCTAGCCATAATATTGGGAACCACCTTCTGGCGTGGCGCTG
GAACCGGTTACGAAGATTTGCCCGTCTCGGCCGTGTTGCAGATGATAGGC
CGCGCCGGGAGGCCAGGAAACGATGATCGAGGAGTGGCGGTCATCATGac
aagcaaggagaaggaactCATGTACATGTCGATGGCCGAAGGGCAAGAAG
TCGTCGAATCCCAGCTCCCAGCCCGTTTTCACGAGAGCTTGAACGCAGAG
GTGTGTTCCAATGTCATCAGTGACCTTGGCGGCGCGATTCGATGGCTGCG
TTCCACCTTCTTGTGGGTCCGCGCGCATCGCAACCCGGATTATTACAccg
cgctcctcccgcgcgGTACCATCTGTAGGGATGCGGATAACAGTATAGGG
GAATATCTGAAAGCGTATATGCTGCGCATCTTGGCTGAGTTGCAAGCAGA
AAATGTCCTGCGCCTGGAGAAGACAGTCGGTCTGAGCCGCGATGGAGCAC
CAATAGACAATCTAGAAACTGAAAACATTGTGCCGCTTGTAGCGGGACGG
GTCATGAGCAAGACATTGGTGAGCTTTGAAACTATCAAAGTACTCCGTGC
CGTCCCCTCCGACGCCAGCTTGGAGGCCCTACTTTACGCGTGCTGTGGCT
GTCCAGAGGTTTGCAACCCAGTCCGTAAAGCTGAGAAACGGCCATTGAAT
GATCTGCTGAAGCGCGTCCGCTTTTCAAAGGGGCTCGGTATTAAGAAATG
CACGCATCCGTCTCACAAAGCGTTCGTACTTGTTCAGGCTTGTCTTGGGA
ACCTGGAAATCGTTGATTTTACTTTGAAGGTAAGTGACAACCCTATGTGC
TTGATAAGTAGTGTATGTGCTGAGGAGTGA

Coding sequence (CDS) from alignment at CM002458.1:688780..690909+

>rna2010 ID=rna2010|Name=rna2010|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002458.1:688780..690909+ (Nannochloropsis gaditana)
ATGAGTCATATTGACAACacaggggaaaagaaagagcagcAGCTGCCCCA
CACAACCTCAAAATTGGAATCTTCAATGATTTCCGGACCCAACAGAGAGC
CTTACTCACAACCTTTGGGTTTTGCTGTTGACCTGGACCGAGAGCTTGGA
GGGAAATTTCGAAATTTATGGCCTTACCGCATCCTTAACGAGGTGCAAAG
TGCATTTTGGCCAGTGTGCTTCAACACTGATCACAACGTGGTCATTGCTG
CACCAACAGGTGTAGGTAAGACCATGGCCTTAGAGGCAGCTATTTGTCGT
CTTTTgcaagaggatgagggtaCGGGGAATGGGCGAAAGACTTGGAAAGC
TGTGTACGTCGCCCCTGTCAAGGCTCTATGTCAACAGCGCTTGGTAGACT
GGCAGCGGCGTTTCGAGACGAGATTCGGTCTAAAATGTGCCGAGCTGACC
GGCGACTCAGCAGGTATGCGCGAGGTGGCCGCTTCTCAGATTATCTTGAC
CACACCGGAGAAATTCGACGCGGTTTCGCGCGACTGGCGGGACAATCTCT
ACCTGCTGGGCTCCGTCCGCTTGGTTCTCATCGACGAAGCACATTTTCTG
GGAGAAGATCCGCGGGGTTCAGCCCTCGAGGCACTTATTTGTCGGCTCAG
GGTCATGAAATCCCACAAAGTGATCATGGATAAGGGCTTGCCTGCCTCCA
AGCTTCGCATCCTGGCCGCTTCTGCAACACTGCCAAATGTCGAGGACATA
GGAAGATGGCTAGAGGCACCCCCAGAGGCTACCTTCAACTTTGACTACAC
CCACCGACCCGTCCCTCTTGAAATTCACGTCCTCGGCTACGCAAATGCCA
GCAACCCTTTCCTATTTCAACGCACTCTAGAAGGCCGTGCACCGGAGGTG
ATCGGCCGATAttcggaggggaaggcgacaCTGGTCTTTTGCGGAAGCAA
AAAGGGAGCGGAGGCATTGGCTACTAAGCTTGCTGAAGCTGGAAGTGGAT
TGGGATTGGGCAACAAGCAGTTGGGAAGAGGCGGGATGCAAGGAAGGAGC
CAGCAGCGACTGGAAGCTGAGCGTTTTTCAAACATCCAGAATCATAAGCT
CAAAGACCTCCTTCTAACCTCAGATGGTGCGGTGGCCTTCCACCATGCGG
GTCTTACAGCCGAAGATAGGACATGTGTGGAGACCCTTTTCCAGCAAGGT
GTTGTTCGCACTCTCTGCTCAACCTCCACGCTTGCACAAGGAATCAACAG
TCCTGCCTTTCTAGCCATAATATTGGGAACCACCTTCTGGCGTGGCGCTG
GAACCGGTTACGAAGATTTGCCCGTCTCGGCCGTGTTGCAGATGATAGGC
CGCGCCGGGAGGCCAGGAAACGATGATCGAGGAGTGGCGGTCATCATGac
aagcaaggagaaggaactCATGTACATGTCGATGGCCGAAGGGCAAGAAG
TCGTCGAATCCCAGCTCCCAGCCCGTTTTCACGAGAGCTTGAACGCAGAG
GTGTGTTCCAATGTCATCAGTGACCTTGGCGGCGCGATTCGATGGCTGCG
TTCCACCTTCTTGTGGGTCCGCGCGCATCGCAACCCGGATTATTACAccg
cgctcctcccgcgcgGTACCATCTGTAGGGATGCGGATAACAGTATAGGG
GAATATCTGAAAGCGTATATGCTGCGCATCTTGGCTGAGTTGCAAGCAGA
AAATGTCCTGCGCCTGGAGAAGACAGTCGGTCTGAGCCGCGATGGAGCAC
CAATAGACAATCTAGAAACTGAAAACATTGTGCCGCTTGTAGCGGGACGG
GTCATGAGCAAGACATTGGTGAGCTTTGAAACTATCAAAGTACTCCGTGC
CGTCCCCTCCGACGCCAGCTTGGAGGCCCTACTTTACGCGTGCTGTGGCT
GTCCAGAGGTTTGCAACCCAGTCCGTAAAGCTGAGAAACGGCCATTGAAT
GATCTGCTGAAGCGCGTCCGCTTTTCAAAGGGGCTCGGTATTAAGAAATG
CACGCATCCGTCTCACAAAGCGTTCGTACTTGTTCAGGCTTGTCTTGGGA
ACCTGGAAATCGTTGATTTTACTTTGAAGGTAAGTGACAACCCTATGTGC
TTGATAAGTAGTGTATGTGCTGAGGAGTGA

Synonyms

Publications