EWM28662.1, cds2002 (CDS) Nannochloropsis gaditana

Overview
NameEWM28662.1
Unique Namecds2002
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:688780..690909 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28662.1
ProductMeiosis-specific DEAD-box helicase
Orig transcript idgnl|cribi|Naga_100002g175.4781.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:688780..690909 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR004179Sec63-dom
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|585111085|gb|EWM28662.1| (Meiosis-specific DEAD-box helicase [Nannochloropsis gaditana])

HSP 1 Score: 1465.67 bits (3793), Expect = 0.000e+0
Identity = 709/709 (100.00%), Postives = 709/709 (100.00%), Query Frame = 0
Query:    1 MSHIDNTGEKKEQQLPHTTSKLESSMISGPNREPYSQPLGFAVDLDRELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGMREVAASQIILTTPEKFDAVSRDWRDNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVCNPVRKAEKRPLNDLLKRVRFSKGLGIKKCTHPSHKAFVLVQACLGNLEIVDFTLKVSDNPMCLISSVCAEE 709
            MSHIDNTGEKKEQQLPHTTSKLESSMISGPNREPYSQPLGFAVDLDRELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGMREVAASQIILTTPEKFDAVSRDWRDNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVCNPVRKAEKRPLNDLLKRVRFSKGLGIKKCTHPSHKAFVLVQACLGNLEIVDFTLKVSDNPMCLISSVCAEE
Sbjct:    1 MSHIDNTGEKKEQQLPHTTSKLESSMISGPNREPYSQPLGFAVDLDRELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGMREVAASQIILTTPEKFDAVSRDWRDNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVCNPVRKAEKRPLNDLLKRVRFSKGLGIKKCTHPSHKAFVLVQACLGNLEIVDFTLKVSDNPMCLISSVCAEE 709          
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|168015535|ref|XP_001760306.1| (predicted protein [Physcomitrella patens] >gi|162688686|gb|EDQ75062.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 394.43 bits (1012), Expect = 1.905e-122
Identity = 251/672 (37.35%), Postives = 364/672 (54.17%), Query Frame = 0
Query:   53 FRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNGRK----TWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDS--AGMREVAASQIILTTPEKFDAVSRDWRDN--LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGR---APEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLR---LEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLN----DLLKRVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
            F++++P+R  N VQS  +   F +D N+VI+APTG GKT+  E  I RLL++   T    K      KAVY+AP+KAL Q +L DW  RF +  G+KC ELTGDS    + E+  + IILTTPEKFD ++R  RD   +   G + L+LIDE H L E  RG+ALEA++ RL+++     I  KG P S +R +A SAT+PN+ED+  WL  P      F   +RPV L   VLGY  A N FLF+R L+ +     +++  +SEGK +LVFC ++KGA+  A  L+++ S  G  N  +    ++   + +L A+R +++   +           V +H+ GL+ EDR  +E LF  G +  LC+TSTLAQG+N PA   II  T ++      Y +   SA+LQM GRAGRP  DD GV VIMT K+   +Y ++  G E VESQL +   E LNAE+    +SD   AI WL+ ++L+VR  +NP YY     +  + RD                    Q EN L+   ++    L++ G    +     + PL  GR+M K  + FET+K +      A++E LL+      E+    +R+ EK+ LN    D+  R+R+    S G   K+    + K F+LV   L G   + DFT+    N +C
Sbjct:   20 FQSVFPFRYFNAVQSESFAEVFLSDDNLVISAPTGSGKTVLFELCILRLLEKFLTTEGHFKHVSGARKAVYIAPMKALVQDKLRDWTLRFSS-LGVKCQELTGDSGPTNVGEMIDTDIILTTPEKFDVITRRHRDRGGMSFFGDIALILIDEVHLLSE-TRGAALEAVVSRLKMLARFPEI--KGSPLSTIRFVAVSATVPNIEDLAEWLHVPKNGMKRFGEEYRPVKLTTTVLGYQPAKNDFLFERRLKIKFRYNADILLHHSEGKPSLVFCSTRKGAQDTAVALSQSVSQHGNHNPFVK--NLEHFKRLQLAAQRTNDVHMQQ------CIRSGVGYHNGGLSMEDRGLIEGLFLTGDLLVLCTTSTLAQGVNLPAHAVIIKSTQYYNKLKGCYVEYERSAILQMSGRAGRPQFDDSGVVVIMTRKDSVHLYHNLLSGSEPVESQLLSSIVEHLNAEIVLMTVSDCSQAIDWLKCSYLYVRIKKNPQYYCV---KQGVPRD--------------------QLENKLKDICVQNVNELAKYGMVKTDEFGYVLTPLEPGRIMEKYYMQFETMKAITKAAERATIEELLHVLANAAELSWIKLRRDEKKRLNDINGDISGRIRYHVNNSNGKLKKRIQSGAEKIFILVNDALSGEPSVTDFTMSQDINGIC 656          
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|694411500|ref|XP_009334110.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH17 isoform X3 [Pyrus x bretschneideri])

HSP 1 Score: 399.823 bits (1026), Expect = 5.254e-121
Identity = 243/672 (36.16%), Postives = 371/672 (55.21%), Query Frame = 0
Query:   48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQ----EDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWRDN---LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
            +L   FR+ + +R  N +QS  +PVCF++D N+V++APTG GKT+  E  I RLL     ED   G    T K +Y+AP KAL Q+++ DW ++F + +G+ C ELTGD  S  +R +  + IILTTPEKFDAV+R +R     +     + L+LIDE H L  DPRG+ LEA++ R++++  +  +    L  + +R LA SAT+PN+ED+  WL+ P +    F    RPV L   V GY  A N FLF++ L+    +V+ +YS GK+ LVFC ++KGA+  A +L +     G  N  +         Q+RL    FS   + +++  +      V +H+ GL+ +DR  +E+LF +G ++ LC+T+TLA GIN PA   +I  T  +      Y +   S +LQM GRAGRP  DD G+ VIMT K+   +Y ++  G E+VESQL +   E L AE+    +SD+  AI W++ +FL+VR  +NP +Y+    R  I +D    I ++++   L+ + EL    ++  +K      DG  +         PL  GR+M+K  + F+T+K +   P + SLE  L+  C   E+    +R++EK+ LND+      R+RF     KG   K+      K FVL   CL G+  + D +L    N +C
Sbjct:   11 DLPAPFRSSFNFRYFNSLQSECFPVCFHSDTNMVVSAPTGSGKTVIFELCILRLLSRFLSEDGRLGRTNGTLKTIYIAPSKALVQEKVRDWNQKFGS-WGITCLELTGDNESYNVRNIQEADIILTTPEKFDAVTR-YRAKDGGMSFFSDIALLLIDEVHLLN-DPRGAVLEAIVSRIKMLAQNPELKSSSL--AHVRFLAVSATIPNIEDLAEWLKVPVQGIKRFGEEMRPVKLTTKVFGYTPAKNDFLFEKRLQNYIFDVLMQYSRGKSALVFCSTRKGAQEAAQRLTQTVMAFGHSNPFIK----SKEQQERLREASFS-CGDKQMQSYI---PYGVGYHNGGLSMKDRNLIESLFLKGDIQILCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGMVVIMTRKDTVHLYENLLNGCEMVESQLLSCLTEHLTAEIVQLTVSDIPRAIEWMKCSFLYVRMKKNPVHYSV---RKVISKD---RIEKHMQEVCLKKVNELSQHQMIWTDK------DGFLLK--------PLEPGRLMTKYYLKFDTMKHIMQTPVNCSLEDALHVICRAEEISWIQLRRSEKKLLNDINADKDGRLRFHVLGDKGKRQKRIQTREEKTFVLANDCLTGDPLVHDLSLTQDMNSIC 649          
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|950956004|ref|XP_014496754.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog [Vigna radiata var. radiata])

HSP 1 Score: 396.356 bits (1017), Expect = 8.200e-121
Identity = 241/671 (35.92%), Postives = 370/671 (55.14%), Query Frame = 0
Query:   48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTG----NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGM--REVAASQIILTTPEKFDAVSRDWRDN--LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
            +L   FR+ + +R  N +QS  +P+CF++D N+VI+APTG GKT+  E  I RLL      G    + + + K +Y+AP KAL Q++L DW ++F    G+ C ELTGDS     R +  + IILTTPEKFDAVSR   ++  L     + L+LIDE H L  DPRG+ALEA++ R++++  +  +  K  P +++R LA SAT+PN+ED+ +WLE P +    F    RPV L   V GYA A N FLF++ L+    +++ +YS GK+ LVFC ++KGA+  A +L++     G  N       ++ R QQ    E   +  + +++  +L     V +H+ GL  +DR  VE LF +G ++ LC+T+TLA GIN PA   +I  T  +      Y +   S +LQM GRAGRP  DD G+ +IMT +E   +Y ++  G EVVESQL +   E L AE+    +SD+  AI WL+ ++L+VR   NP  Y   + +G     + +S+ ++++   +  + EL    ++ +++   L R              PL  GR+M+K  + F+T+K +   P + SLE  L+  C   E+    +R+ EK+ LND+      R+RF     KG   K+      K F+L   CL G+  + D +L    N +C
Sbjct:   11 DLPQPFRSCFSFRYFNSLQSECFPICFHSDVNMVISAPTGSGKTVLFELCILRLLSRFISAGGIFIHEKGSLKTIYIAPSKALVQEKLRDWNKKFGP-LGINCLELTGDSESYTPRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDIALLLIDEVHLLN-DPRGAALEAIVSRIKIVSGNPKL--KSNPLAQVRFLAVSATIPNIEDLAKWLEVPDQGIKRFGEEMRPVKLTTKVFGYARAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQIVMTFGQSNP-----FIKNREQQDRLREASLSCSDKQMQSYILY---GVGYHNGGLCLKDRNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKCLYMEYDRSTILQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLSCLTEHLLAEIVQLTVSDITKAIEWLKFSYLYVRMKTNPVNYA--IKKGI----SGDSLEKHVQDICVHKVKELSQCQMVWVDEDGFLLR--------------PLDPGRLMTKYYLRFDTMKQIMRTPENCSLEDALHVVCSAEEIAWIQLRRNEKKLLNDINADKDGRLRFHILGDKGRKKKRIQTREEKIFILANDCLTGDPSVHDLSLIQDMNSIC 649          
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|1039905856|ref|XP_017181270.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH17-like [Malus domestica])

HSP 1 Score: 398.282 bits (1022), Expect = 1.295e-120
Identity = 244/673 (36.26%), Postives = 370/673 (54.98%), Query Frame = 0
Query:   48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQ----EDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWRDN---LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQ-RLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
            +L   FR+ + +R  N +QS  +PVCF++D N+V++APTG GKT+  E  I RLL     ED   G    T K +Y+AP KAL Q+++ DW ++F + +G+ C ELTGD  S   R +  + IILTTPEKFDAV+R +R     +     + L+LIDE H L  DPRG+ LEA++ R++++  +  +    L  + +R LA SAT+PN+ED+  WL+ P      F    RPV L   VLGY  A N FLF++ L+    +++ +YS GK+ LVFC ++KGA+  A +L +     G  N       ++ R QQ RL    FS   + +++  +      V +H+ GL+ +DR  +E+LF +G ++ LC+T+TLA GIN PA   +I  T  +      Y +   S +LQM GRAGRP  DD G+ VIMT K+   +Y ++  G E+VESQL +   E L AE+    +S++  AI W++ +FL+VR  +NP +Y+    R  I +D        ++ +M  +   LQ  N L   + +   +DG  +         PL  GR+M+K  + F+T+K +   P + SLE  L+  C   E+    +R++EK+ LND+      R+RF     KG   K+      K FVL   CL G+  + D +L    N +C
Sbjct:   11 DLPAPFRSSFNFRYFNSLQSECFPVCFHSDTNMVVSAPTGSGKTVIFELCILRLLSRFLSEDGRLGRTNGTLKTIYIAPSKALVQEKVRDWNQKFGS-WGITCLELTGDNESYNXRNIQEADIILTTPEKFDAVTR-YRAKDGGMSFFSDIALLLIDEVHLLN-DPRGAVLEAIVSRIKMLAQNPELKSSSL--AHVRFLAVSATIPNIEDLAEWLKVPVXGIKRFGEEMRPVKLTTKVLGYTPAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLTQTVMAFGHSNP-----FIKSREQQERLREASFS-CGDKQMQSYI---PYGVGYHNGGLSMKDRNLIESLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGMVVIMTRKDTVHLYENLLNGCEMVESQLLSCLTEHLTAEIVQLTVSNIPRAIEWMKCSFLYVRMKKNPVHYSV---RKVISKDR-------IEKHMQEVC--LQKVNELSQHQMIWTDKDGFLLK--------PLEPGRLMTKYYLKFDTMKHIMKTPVNCSLEDALHVICRAEEISWIQLRRSEKKLLNDINADKDGRLRFHXLGDKGRRQKRIQTREEKTFVLANDCLTGDPSVHDLSLTQDMNSIC 649          
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|527196949|gb|EPS65628.1| (hypothetical protein M569_09143, partial [Genlisea aurea])

HSP 1 Score: 392.889 bits (1008), Expect = 1.785e-120
Identity = 248/674 (36.80%), Postives = 377/674 (55.93%), Query Frame = 0
Query:   48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNG-----RKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDS--AGMREVAASQIILTTPEKFDAVSR-DWRDN-LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHR--NPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
            +L   FR+++ +R  N +QS  +P CF +D N+ ++APTG GKT+  E  I RLL +   TG+G     R T K +Y+AP KAL Q++L DW ++F++  G+ C ELTGD+    ++ +  + IILTTPEKFDAV+R   RD  L     V +VLIDE H L  DPRG+ALEA++ R++ M + K  M    P S++R LA SAT+PN+ D+G WL APP     F    RPV L   V GYA A N FLF++ L+    +++ +YS GK+ LVFC ++KGA+  A  LA+    + + +  LG   ++ R QQ    E   +  + +++  ++     V +H+ GL+ +DR+ +E LF  G V+ LC+T+TLA G+N PA   +I  T  +      Y +   S VLQM GRAGRP  DD G+ +IMT KE   +Y ++  G E+VESQL     E L AE+  + ISD+  AI W++ +FL+VR  +  NP+ Y+ L  +G     +D+ + ++L+   ++ + EL    +      V    DG  +         PL  GR+M+K  + F+T+K +   P   ++E  L   C   E+    +R+ EK+ LND+      R+R+    +KG   K+      K FVL+  CL G+  + D ++    N +C
Sbjct:    8 DLPDLFRSVFGFRYFNSLQSECFPACFLSDMNMTVSAPTGSGKTVLFELCIMRLLSK-FITGDGAFIHHRGTLKTIYIAPSKALVQEKLRDWSQKFQS-IGINCLELTGDNENCSIKSIQDADIILTTPEKFDAVTRYRIRDGGLSFFSDVAVVLIDEVHLLN-DPRGAALEAIVSRIK-MLARKPEMQSS-PLSQVRFLAVSATIPNINDLGEWLMAPPRGIKRFGEEMRPVKLTTKVFGYAPARNDFLFEKRLQNYIFDLLMQYSRGKSALVFCSTRKGAQEAAQLLAQ----IAMTSGNLG-PFIKSRDQQERLKEASLSCSDKQMQSYMV---HGVGYHNGGLSMKDRSIIEGLFLNGDVQILCTTNTLAHGVNLPAHTVVIKSTQHFNKEKGIYMEYERSMVLQMCGRAGRPPFDDTGLVIIMTRKETVHLYENLLNGCEIVESQLLPCITEHLTAEIVQSTISDITRAIEWMKCSFLYVRMKKACNPESYSVL--KGL----SDDQVEKHLQEICVQKVKELSQYQM------VWTDEDGFVLK--------PLELGRLMTKYYLKFDTMKHIIQAPRTCNIEEALRVICQAEEIAWIQLRRNEKKCLNDINNDKDGRLRYHILDAKGKKKKRIQTREEKIFVLLNDCLTGDPLVRDLSMSQDVNSIC 648          
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|1044560201|ref|XP_017416284.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH17 [Vigna angularis])

HSP 1 Score: 396.741 bits (1018), Expect = 2.481e-120
Identity = 244/672 (36.31%), Postives = 367/672 (54.61%), Query Frame = 0
Query:   48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTG----NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGM--REVAASQIILTTPEKFDAVSRDWRDN--LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQ-RLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
            +L   FR+ + +R  N +QS  +P+CF++D N+VI+APTG GKT+  E  I RLL      G    + + + K +Y+AP KAL Q++L DW ++F    G+ C ELTGDS     R +  + IILTTPEKFDAVSR   ++  L     + L+LIDE H L  DPRG+ALEA++ R++++  +  +  K  P +++R LA SAT+PN+ED+ +WLE P +    F    RPV L   V GYA A N FLF++ L+    +++ +YS GK+ LVFC ++KGA+  A +L++     G  N       ++ R QQ RL     S    H    +L      V +H+ GL  +DR  VE LF +G ++ LC+T+TLA GIN PA   +I  T  +      Y +   S +LQM GRAGRP  DD G+ +IMT +E   +Y ++  G EVVESQL +   E L AE+    +SD+  AI WL+ ++L+VR   NP  Y   + +G     + +S+ ++++   +  + EL    ++ +++   L R              PL  GR+M+K  + F+T+K +   P   SLE  L+  C   E+    +R+ EK+ LND+      R+RF     KG   K+      K F+L   CL G+  + D +L    N +C
Sbjct:   11 DLPPPFRSCFSFRYFNSLQSECFPICFHSDVNMVISAPTGSGKTVLFELCILRLLSRFISAGGIFIHEKGSLKTIYIAPSKALVQEKLRDWNKKFGP-LGINCLELTGDSESYTPRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDIALLLIDEVHLLN-DPRGAALEAIVSRIKIVSGNPKL--KSNPLAQVRFLAVSATIPNIEDLAKWLEVPDQGIKRFGEEMRPVKLTTKVFGYARAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQIVMTFGQSNP-----FIKNREQQDRLREASLSCSDKHMQSYILY----GVGYHNGGLCLKDRNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKCLYMEYDRSTILQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLSCLTEHLLAEIVQLTVSDITKAIEWLKFSYLYVRMKTNPMNYA--IKKGI----SGDSLEKHVQDICVHKVKELSQCQMVWVDEDGFLLR--------------PLDPGRLMTKYYLRFDTMKQIMRTPESCSLEDALHVVCSAEEIAWIQLRRNEKKLLNDINADKDGRLRFHILGDKGRKKKRIQTREEKIFILANDCLTGDPSVHDLSLIQDMNSIC 649          
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|565470846|ref|XP_006293226.1| (hypothetical protein CARUB_v10019550mg [Capsella rubella] >gi|482561933|gb|EOA26124.1| hypothetical protein CARUB_v10019550mg [Capsella rubella])

HSP 1 Score: 395.971 bits (1016), Expect = 3.335e-120
Identity = 248/674 (36.80%), Postives = 376/674 (55.79%), Query Frame = 0
Query:   48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQED---EGTG-NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWR---DNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSN--IQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
            +L G FR+ + +R  N +QS  +P+CF++D N+VI+APTG GKT+  E  I RLL +    EG   + +   K VY++P KAL Q++L DW ++F + +G+ C ELTGD  +   R +  + IILTTPEKFDAVSR +R     L   G + LVLIDE H L  DPRG+ALEA++ R++++ S+  +  +  P + +R+LA SAT+PN+ED+  WL  P      F    RPV L   V GYA A N FLF++ L+    +++ +YS+GK+ LVFC ++KGA+  A KLA+     G  N  +       +S+++LE  R ++    + +++  +L     V +H+ GL  +DR+ VE LF  G ++ +C+T+TLA GIN PA   +I  T  +      Y +   S +LQM GRAGRP  DD G+ +IMT +E   +Y ++  G EVVESQL     E L AE+    ISD+  AI W++ ++L+VR  +NP+ Y   + +G I +D              R+   LQ    L L+K   LSR      + +   + P   GR+M+K  + F+T+K +   P+  SL+  L+  C   E+    +R+ EK+ LND+      R+RF    +KG   K+      K FVL    L G+  + D ++    N +C
Sbjct:   11 DLPGNFRSAFSFRYFNSLQSECFPLCFHSDINMVISAPTGSGKTVLFELCILRLLSKSISKEGRFLHAKGALKTVYISPSKALVQEKLRDWNQKFNS-WGISCLELTGDNETYSTRNIQDADIILTTPEKFDAVSR-YRVTSGGLGFFGDIALVLIDEVHLLN-DPRGAALEAIVSRIKILSSNHEL--RSSPLASVRLLAVSATIPNIEDLAEWLNVPTAGIKKFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTALTYGYSNPFI-------KSREQLERLREASPMCSDKQMQSYILQ---GVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYVRMKKNPENYA--IKKG-IPKD--------------RVEKHLQE---LCLQKINELSRYQMIWTDTDGFVLKPEEPGRLMTKYYLKFDTMKYIINAPTSYSLDEALHIVCRAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDNKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLSMTQDANSIC 649          
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|567141625|ref|XP_006395405.1| (hypothetical protein EUTSA_v10003551mg [Eutrema salsugineum] >gi|557092044|gb|ESQ32691.1| hypothetical protein EUTSA_v10003551mg [Eutrema salsugineum])

HSP 1 Score: 393.66 bits (1010), Expect = 2.257e-119
Identity = 246/674 (36.50%), Postives = 376/674 (55.79%), Query Frame = 0
Query:   48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQE---DEGTG-NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWR---DNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSN--IQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
            +L G FR+ + +R  N +QS  +P+CF++D N+VI+APTG GKT+  E  I RLL +   +EG   + +   K VY++P KAL Q++L DW ++F + +G+ C ELTGD  +   + +  + +ILTTPEKFDAVSR +R     L     + LVLIDE H L  DPRG+ALEA++ R++++ S+  +     P + +R+LA SAT+PN+ED+  WL+ P      F    RPV L   V GYA A N FLF++ L+    E++ ++S+GK+ LVFC ++KGA+  A KLA+     G  N  +       +S+++LE  R ++    + +++  +L     V +H+ GL  +DR+ VE LF  G ++ LC+T+TLA GIN PA   +I  T  +      Y +   S +LQM GRAGRP  DD G+ +IMT +E   +Y ++  G EVVESQL     E L AE+    +SD+  AI W++ ++L+VR  +NP+ Y   + +G I +D              R+   LQ    L L+K   LSR      + +   + P   GR+M+K  + F+T+K +   P+  SL+  L+  C   E+    +R+ EK+ LND+      R+RF    SKG   K+      K FVL    L G+  + D ++    N +C
Sbjct:   11 DLPGNFRSAFSFRYFNSLQSECFPLCFHSDINMVISAPTGSGKTVLFELCILRLLSKSISNEGRFLHAKGALKTVYISPSKALVQEKLRDWNQKFNS-WGISCLELTGDNETYSTKNIQDADLILTTPEKFDAVSR-YRVTSGGLGFFSDIALVLIDEVHLLN-DPRGAALEAIVSRIKILSSNHELSSS--PLASVRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQNYIYEILMQFSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFI-------KSREQLERLREASPMCSDKQMQSYILQ---GVGYHNGGLCQKDRSLVEGLFLSGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTVSDVSRAIEWMKCSYLYVRMKKNPENYA--IKKG-IPKD--------------RVEKHLQE---LCLQKINELSRYQMIWTDTDGFVLKPEEPGRLMTKYYLKFDTMKYIIHAPTGYSLDEALHIVCRAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDSKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLSMTQDANSIC 649          
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|297818370|ref|XP_002877068.1| (DExH-box ATP-dependent RNA helicase DExH17 [Arabidopsis lyrata subsp. lyrata] >gi|297322906|gb|EFH53327.1| rock-N-rollers [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 392.889 bits (1008), Expect = 4.213e-119
Identity = 244/674 (36.20%), Postives = 377/674 (55.93%), Query Frame = 0
Query:   48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQED---EGTG-NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWR---DNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSN--IQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
            +L G FR+ + +R  N +QS  +P+CF++D N+VI+APTG GKT+  E  I RLL +    EG   + +   KAVY++P KAL Q++L DW ++F + +G+ C ELTGD  +   R +  + IILTTPEKFDAVSR +R     L     + LVLIDE H L  DPRG+ALEA++ R++++ S+  +  +  P + +R+LA SAT+PN+ED+  WL+ P      F    RPV L   V GYA A N FLF++ L+    +++ +YS+GK+ LVFC ++KGA+  A KLA+     G  N  +       +S+++LE  R ++    + +++  +L     V +H+ GL  +DR+ VE LF  G ++ +C+T+TLA GIN PA   +I  T  +      Y +   S +LQM GRAGRP  DD G+ +IMT +E   +Y ++  G EVVESQL     E L  E+    ISD+  AI W++ ++L+VR  +NP+ Y   + +G I +D    + ++L+   L+ + EL    +      +    DG  +         P   GR+M+K  + F+T+K +   P+  SL+  L+  C   E+    +R+ EK+ LND+      R+RF    +KG   K+      K FVL    L G+  + D ++    N +C
Sbjct:   11 DLPGNFRSAFSFRYFNSLQSECFPLCFHSDINMVISAPTGSGKTVLFELCILRLLSKSIAKEGMFLHAKGALKAVYISPSKALVQEKLRDWNQKFNS-WGISCLELTGDNETYSTRNIQDADIILTTPEKFDAVSR-YRVTSGGLGFFSDIALVLIDEVHLLN-DPRGAALEAIVSRIKILSSNHEL--RSSPLASVRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFI-------KSREQLERLREASPMCSDKQMQSYILQ---GVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTTEIVQLTISDITRAIEWMKCSYLYVRMKKNPENYA--IKKG-IPKD---QVEKHLQELCLQKINELSQYQM------IWTDTDGFVLK--------PEEPGRLMTKYYLKFDTMKYIINAPTGYSLDEALHIVCRAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDNKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLSMTQDANSIC 649          
The following BLAST results are available for this feature:
BLAST of EWM28662.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111085|gb|EWM28662.1|0.000e+0100.00Meiosis-specific DEAD-box helicase [Nannochloropsi... [more]
gi|168015535|ref|XP_001760306.1|1.905e-12237.35predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|694411500|ref|XP_009334110.1|5.254e-12136.16PREDICTED: DExH-box ATP-dependent RNA helicase DEx... [more]
gi|950956004|ref|XP_014496754.1|8.200e-12135.92PREDICTED: ATP-dependent DNA helicase MER3 homolog... [more]
gi|1039905856|ref|XP_017181270.1|1.295e-12036.26PREDICTED: DExH-box ATP-dependent RNA helicase DEx... [more]
gi|527196949|gb|EPS65628.1|1.785e-12036.80hypothetical protein M569_09143, partial [Genlisea... [more]
gi|1044560201|ref|XP_017416284.1|2.481e-12036.31PREDICTED: DExH-box ATP-dependent RNA helicase DEx... [more]
gi|565470846|ref|XP_006293226.1|3.335e-12036.80hypothetical protein CARUB_v10019550mg [Capsella r... [more]
gi|567141625|ref|XP_006395405.1|2.257e-11936.50hypothetical protein EUTSA_v10003551mg [Eutrema sa... [more]
gi|297818370|ref|XP_002877068.1|4.213e-11936.20DExH-box ATP-dependent RNA helicase DExH17 [Arabid... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2010rna2010Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications