EWM28662.1, cds2002 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|585111085|gb|EWM28662.1| (Meiosis-specific DEAD-box helicase [Nannochloropsis gaditana]) HSP 1 Score: 1465.67 bits (3793), Expect = 0.000e+0 Identity = 709/709 (100.00%), Postives = 709/709 (100.00%), Query Frame = 0
Query: 1 MSHIDNTGEKKEQQLPHTTSKLESSMISGPNREPYSQPLGFAVDLDRELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGMREVAASQIILTTPEKFDAVSRDWRDNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVCNPVRKAEKRPLNDLLKRVRFSKGLGIKKCTHPSHKAFVLVQACLGNLEIVDFTLKVSDNPMCLISSVCAEE 709
MSHIDNTGEKKEQQLPHTTSKLESSMISGPNREPYSQPLGFAVDLDRELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGMREVAASQIILTTPEKFDAVSRDWRDNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVCNPVRKAEKRPLNDLLKRVRFSKGLGIKKCTHPSHKAFVLVQACLGNLEIVDFTLKVSDNPMCLISSVCAEE
Sbjct: 1 MSHIDNTGEKKEQQLPHTTSKLESSMISGPNREPYSQPLGFAVDLDRELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGMREVAASQIILTTPEKFDAVSRDWRDNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVCNPVRKAEKRPLNDLLKRVRFSKGLGIKKCTHPSHKAFVLVQACLGNLEIVDFTLKVSDNPMCLISSVCAEE 709
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|168015535|ref|XP_001760306.1| (predicted protein [Physcomitrella patens] >gi|162688686|gb|EDQ75062.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 394.43 bits (1012), Expect = 1.905e-122 Identity = 251/672 (37.35%), Postives = 364/672 (54.17%), Query Frame = 0
Query: 53 FRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNGRK----TWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDS--AGMREVAASQIILTTPEKFDAVSRDWRDN--LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGR---APEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLR---LEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLN----DLLKRVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
F++++P+R N VQS + F +D N+VI+APTG GKT+ E I RLL++ T K KAVY+AP+KAL Q +L DW RF + G+KC ELTGDS + E+ + IILTTPEKFD ++R RD + G + L+LIDE H L E RG+ALEA++ RL+++ I KG P S +R +A SAT+PN+ED+ WL P F +RPV L VLGY A N FLF+R L+ + +++ +SEGK +LVFC ++KGA+ A L+++ S G N + ++ + +L A+R +++ + V +H+ GL+ EDR +E LF G + LC+TSTLAQG+N PA II T ++ Y + SA+LQM GRAGRP DD GV VIMT K+ +Y ++ G E VESQL + E LNAE+ +SD AI WL+ ++L+VR +NP YY + + RD Q EN L+ ++ L++ G + + PL GR+M K + FET+K + A++E LL+ E+ +R+ EK+ LN D+ R+R+ S G K+ + K F+LV L G + DFT+ N +C
Sbjct: 20 FQSVFPFRYFNAVQSESFAEVFLSDDNLVISAPTGSGKTVLFELCILRLLEKFLTTEGHFKHVSGARKAVYIAPMKALVQDKLRDWTLRFSS-LGVKCQELTGDSGPTNVGEMIDTDIILTTPEKFDVITRRHRDRGGMSFFGDIALILIDEVHLLSE-TRGAALEAVVSRLKMLARFPEI--KGSPLSTIRFVAVSATVPNIEDLAEWLHVPKNGMKRFGEEYRPVKLTTTVLGYQPAKNDFLFERRLKIKFRYNADILLHHSEGKPSLVFCSTRKGAQDTAVALSQSVSQHGNHNPFVK--NLEHFKRLQLAAQRTNDVHMQQ------CIRSGVGYHNGGLSMEDRGLIEGLFLTGDLLVLCTTSTLAQGVNLPAHAVIIKSTQYYNKLKGCYVEYERSAILQMSGRAGRPQFDDSGVVVIMTRKDSVHLYHNLLSGSEPVESQLLSSIVEHLNAEIVLMTVSDCSQAIDWLKCSYLYVRIKKNPQYYCV---KQGVPRD--------------------QLENKLKDICVQNVNELAKYGMVKTDEFGYVLTPLEPGRIMEKYYMQFETMKAITKAAERATIEELLHVLANAAELSWIKLRRDEKKRLNDINGDISGRIRYHVNNSNGKLKKRIQSGAEKIFILVNDALSGEPSVTDFTMSQDINGIC 656
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|694411500|ref|XP_009334110.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH17 isoform X3 [Pyrus x bretschneideri]) HSP 1 Score: 399.823 bits (1026), Expect = 5.254e-121 Identity = 243/672 (36.16%), Postives = 371/672 (55.21%), Query Frame = 0
Query: 48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQ----EDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWRDN---LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
+L FR+ + +R N +QS +PVCF++D N+V++APTG GKT+ E I RLL ED G T K +Y+AP KAL Q+++ DW ++F + +G+ C ELTGD S +R + + IILTTPEKFDAV+R +R + + L+LIDE H L DPRG+ LEA++ R++++ + + L + +R LA SAT+PN+ED+ WL+ P + F RPV L V GY A N FLF++ L+ +V+ +YS GK+ LVFC ++KGA+ A +L + G N + Q+RL FS + +++ + V +H+ GL+ +DR +E+LF +G ++ LC+T+TLA GIN PA +I T + Y + S +LQM GRAGRP DD G+ VIMT K+ +Y ++ G E+VESQL + E L AE+ +SD+ AI W++ +FL+VR +NP +Y+ R I +D I ++++ L+ + EL ++ +K DG + PL GR+M+K + F+T+K + P + SLE L+ C E+ +R++EK+ LND+ R+RF KG K+ K FVL CL G+ + D +L N +C
Sbjct: 11 DLPAPFRSSFNFRYFNSLQSECFPVCFHSDTNMVVSAPTGSGKTVIFELCILRLLSRFLSEDGRLGRTNGTLKTIYIAPSKALVQEKVRDWNQKFGS-WGITCLELTGDNESYNVRNIQEADIILTTPEKFDAVTR-YRAKDGGMSFFSDIALLLIDEVHLLN-DPRGAVLEAIVSRIKMLAQNPELKSSSL--AHVRFLAVSATIPNIEDLAEWLKVPVQGIKRFGEEMRPVKLTTKVFGYTPAKNDFLFEKRLQNYIFDVLMQYSRGKSALVFCSTRKGAQEAAQRLTQTVMAFGHSNPFIK----SKEQQERLREASFS-CGDKQMQSYI---PYGVGYHNGGLSMKDRNLIESLFLKGDIQILCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGMVVIMTRKDTVHLYENLLNGCEMVESQLLSCLTEHLTAEIVQLTVSDIPRAIEWMKCSFLYVRMKKNPVHYSV---RKVISKD---RIEKHMQEVCLKKVNELSQHQMIWTDK------DGFLLK--------PLEPGRLMTKYYLKFDTMKHIMQTPVNCSLEDALHVICRAEEISWIQLRRSEKKLLNDINADKDGRLRFHVLGDKGKRQKRIQTREEKTFVLANDCLTGDPLVHDLSLTQDMNSIC 649
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|950956004|ref|XP_014496754.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog [Vigna radiata var. radiata]) HSP 1 Score: 396.356 bits (1017), Expect = 8.200e-121 Identity = 241/671 (35.92%), Postives = 370/671 (55.14%), Query Frame = 0
Query: 48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTG----NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGM--REVAASQIILTTPEKFDAVSRDWRDN--LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
+L FR+ + +R N +QS +P+CF++D N+VI+APTG GKT+ E I RLL G + + + K +Y+AP KAL Q++L DW ++F G+ C ELTGDS R + + IILTTPEKFDAVSR ++ L + L+LIDE H L DPRG+ALEA++ R++++ + + K P +++R LA SAT+PN+ED+ +WLE P + F RPV L V GYA A N FLF++ L+ +++ +YS GK+ LVFC ++KGA+ A +L++ G N ++ R QQ E + + +++ +L V +H+ GL +DR VE LF +G ++ LC+T+TLA GIN PA +I T + Y + S +LQM GRAGRP DD G+ +IMT +E +Y ++ G EVVESQL + E L AE+ +SD+ AI WL+ ++L+VR NP Y + +G + +S+ ++++ + + EL ++ +++ L R PL GR+M+K + F+T+K + P + SLE L+ C E+ +R+ EK+ LND+ R+RF KG K+ K F+L CL G+ + D +L N +C
Sbjct: 11 DLPQPFRSCFSFRYFNSLQSECFPICFHSDVNMVISAPTGSGKTVLFELCILRLLSRFISAGGIFIHEKGSLKTIYIAPSKALVQEKLRDWNKKFGP-LGINCLELTGDSESYTPRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDIALLLIDEVHLLN-DPRGAALEAIVSRIKIVSGNPKL--KSNPLAQVRFLAVSATIPNIEDLAKWLEVPDQGIKRFGEEMRPVKLTTKVFGYARAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQIVMTFGQSNP-----FIKNREQQDRLREASLSCSDKQMQSYILY---GVGYHNGGLCLKDRNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKCLYMEYDRSTILQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLSCLTEHLLAEIVQLTVSDITKAIEWLKFSYLYVRMKTNPVNYA--IKKGI----SGDSLEKHVQDICVHKVKELSQCQMVWVDEDGFLLR--------------PLDPGRLMTKYYLRFDTMKQIMRTPENCSLEDALHVVCSAEEIAWIQLRRNEKKLLNDINADKDGRLRFHILGDKGRKKKRIQTREEKIFILANDCLTGDPSVHDLSLIQDMNSIC 649
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|1039905856|ref|XP_017181270.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH17-like [Malus domestica]) HSP 1 Score: 398.282 bits (1022), Expect = 1.295e-120 Identity = 244/673 (36.26%), Postives = 370/673 (54.98%), Query Frame = 0
Query: 48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQ----EDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWRDN---LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQ-RLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
+L FR+ + +R N +QS +PVCF++D N+V++APTG GKT+ E I RLL ED G T K +Y+AP KAL Q+++ DW ++F + +G+ C ELTGD S R + + IILTTPEKFDAV+R +R + + L+LIDE H L DPRG+ LEA++ R++++ + + L + +R LA SAT+PN+ED+ WL+ P F RPV L VLGY A N FLF++ L+ +++ +YS GK+ LVFC ++KGA+ A +L + G N ++ R QQ RL FS + +++ + V +H+ GL+ +DR +E+LF +G ++ LC+T+TLA GIN PA +I T + Y + S +LQM GRAGRP DD G+ VIMT K+ +Y ++ G E+VESQL + E L AE+ +S++ AI W++ +FL+VR +NP +Y+ R I +D ++ +M + LQ N L + + +DG + PL GR+M+K + F+T+K + P + SLE L+ C E+ +R++EK+ LND+ R+RF KG K+ K FVL CL G+ + D +L N +C
Sbjct: 11 DLPAPFRSSFNFRYFNSLQSECFPVCFHSDTNMVVSAPTGSGKTVIFELCILRLLSRFLSEDGRLGRTNGTLKTIYIAPSKALVQEKVRDWNQKFGS-WGITCLELTGDNESYNXRNIQEADIILTTPEKFDAVTR-YRAKDGGMSFFSDIALLLIDEVHLLN-DPRGAVLEAIVSRIKMLAQNPELKSSSL--AHVRFLAVSATIPNIEDLAEWLKVPVXGIKRFGEEMRPVKLTTKVLGYTPAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLTQTVMAFGHSNP-----FIKSREQQERLREASFS-CGDKQMQSYI---PYGVGYHNGGLSMKDRNLIESLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGMVVIMTRKDTVHLYENLLNGCEMVESQLLSCLTEHLTAEIVQLTVSNIPRAIEWMKCSFLYVRMKKNPVHYSV---RKVISKDR-------IEKHMQEVC--LQKVNELSQHQMIWTDKDGFLLK--------PLEPGRLMTKYYLKFDTMKHIMKTPVNCSLEDALHVICRAEEISWIQLRRSEKKLLNDINADKDGRLRFHXLGDKGRRQKRIQTREEKTFVLANDCLTGDPSVHDLSLTQDMNSIC 649
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|527196949|gb|EPS65628.1| (hypothetical protein M569_09143, partial [Genlisea aurea]) HSP 1 Score: 392.889 bits (1008), Expect = 1.785e-120 Identity = 248/674 (36.80%), Postives = 377/674 (55.93%), Query Frame = 0
Query: 48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNG-----RKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDS--AGMREVAASQIILTTPEKFDAVSR-DWRDN-LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHR--NPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
+L FR+++ +R N +QS +P CF +D N+ ++APTG GKT+ E I RLL + TG+G R T K +Y+AP KAL Q++L DW ++F++ G+ C ELTGD+ ++ + + IILTTPEKFDAV+R RD L V +VLIDE H L DPRG+ALEA++ R++ M + K M P S++R LA SAT+PN+ D+G WL APP F RPV L V GYA A N FLF++ L+ +++ +YS GK+ LVFC ++KGA+ A LA+ + + + LG ++ R QQ E + + +++ ++ V +H+ GL+ +DR+ +E LF G V+ LC+T+TLA G+N PA +I T + Y + S VLQM GRAGRP DD G+ +IMT KE +Y ++ G E+VESQL E L AE+ + ISD+ AI W++ +FL+VR + NP+ Y+ L +G +D+ + ++L+ ++ + EL + V DG + PL GR+M+K + F+T+K + P ++E L C E+ +R+ EK+ LND+ R+R+ +KG K+ K FVL+ CL G+ + D ++ N +C
Sbjct: 8 DLPDLFRSVFGFRYFNSLQSECFPACFLSDMNMTVSAPTGSGKTVLFELCIMRLLSK-FITGDGAFIHHRGTLKTIYIAPSKALVQEKLRDWSQKFQS-IGINCLELTGDNENCSIKSIQDADIILTTPEKFDAVTRYRIRDGGLSFFSDVAVVLIDEVHLLN-DPRGAALEAIVSRIK-MLARKPEMQSS-PLSQVRFLAVSATIPNINDLGEWLMAPPRGIKRFGEEMRPVKLTTKVFGYAPARNDFLFEKRLQNYIFDLLMQYSRGKSALVFCSTRKGAQEAAQLLAQ----IAMTSGNLG-PFIKSRDQQERLKEASLSCSDKQMQSYMV---HGVGYHNGGLSMKDRSIIEGLFLNGDVQILCTTNTLAHGVNLPAHTVVIKSTQHFNKEKGIYMEYERSMVLQMCGRAGRPPFDDTGLVIIMTRKETVHLYENLLNGCEIVESQLLPCITEHLTAEIVQSTISDITRAIEWMKCSFLYVRMKKACNPESYSVL--KGL----SDDQVEKHLQEICVQKVKELSQYQM------VWTDEDGFVLK--------PLELGRLMTKYYLKFDTMKHIIQAPRTCNIEEALRVICQAEEIAWIQLRRNEKKCLNDINNDKDGRLRYHILDAKGKKKKRIQTREEKIFVLLNDCLTGDPLVRDLSMSQDVNSIC 648
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|1044560201|ref|XP_017416284.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH17 [Vigna angularis]) HSP 1 Score: 396.741 bits (1018), Expect = 2.481e-120 Identity = 244/672 (36.31%), Postives = 367/672 (54.61%), Query Frame = 0
Query: 48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTG----NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGM--REVAASQIILTTPEKFDAVSRDWRDN--LYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQ-RLEAERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
+L FR+ + +R N +QS +P+CF++D N+VI+APTG GKT+ E I RLL G + + + K +Y+AP KAL Q++L DW ++F G+ C ELTGDS R + + IILTTPEKFDAVSR ++ L + L+LIDE H L DPRG+ALEA++ R++++ + + K P +++R LA SAT+PN+ED+ +WLE P + F RPV L V GYA A N FLF++ L+ +++ +YS GK+ LVFC ++KGA+ A +L++ G N ++ R QQ RL S H +L V +H+ GL +DR VE LF +G ++ LC+T+TLA GIN PA +I T + Y + S +LQM GRAGRP DD G+ +IMT +E +Y ++ G EVVESQL + E L AE+ +SD+ AI WL+ ++L+VR NP Y + +G + +S+ ++++ + + EL ++ +++ L R PL GR+M+K + F+T+K + P SLE L+ C E+ +R+ EK+ LND+ R+RF KG K+ K F+L CL G+ + D +L N +C
Sbjct: 11 DLPPPFRSCFSFRYFNSLQSECFPICFHSDVNMVISAPTGSGKTVLFELCILRLLSRFISAGGIFIHEKGSLKTIYIAPSKALVQEKLRDWNKKFGP-LGINCLELTGDSESYTPRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDIALLLIDEVHLLN-DPRGAALEAIVSRIKIVSGNPKL--KSNPLAQVRFLAVSATIPNIEDLAKWLEVPDQGIKRFGEEMRPVKLTTKVFGYARAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQIVMTFGQSNP-----FIKNREQQDRLREASLSCSDKHMQSYILY----GVGYHNGGLCLKDRNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKCLYMEYDRSTILQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLSCLTEHLLAEIVQLTVSDITKAIEWLKFSYLYVRMKTNPMNYA--IKKGI----SGDSLEKHVQDICVHKVKELSQCQMVWVDEDGFLLR--------------PLDPGRLMTKYYLRFDTMKQIMRTPESCSLEDALHVVCSAEEIAWIQLRRNEKKLLNDINADKDGRLRFHILGDKGRKKKRIQTREEKIFILANDCLTGDPSVHDLSLIQDMNSIC 649
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|565470846|ref|XP_006293226.1| (hypothetical protein CARUB_v10019550mg [Capsella rubella] >gi|482561933|gb|EOA26124.1| hypothetical protein CARUB_v10019550mg [Capsella rubella]) HSP 1 Score: 395.971 bits (1016), Expect = 3.335e-120 Identity = 248/674 (36.80%), Postives = 376/674 (55.79%), Query Frame = 0
Query: 48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQED---EGTG-NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWR---DNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSN--IQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
+L G FR+ + +R N +QS +P+CF++D N+VI+APTG GKT+ E I RLL + EG + + K VY++P KAL Q++L DW ++F + +G+ C ELTGD + R + + IILTTPEKFDAVSR +R L G + LVLIDE H L DPRG+ALEA++ R++++ S+ + + P + +R+LA SAT+PN+ED+ WL P F RPV L V GYA A N FLF++ L+ +++ +YS+GK+ LVFC ++KGA+ A KLA+ G N + +S+++LE R ++ + +++ +L V +H+ GL +DR+ VE LF G ++ +C+T+TLA GIN PA +I T + Y + S +LQM GRAGRP DD G+ +IMT +E +Y ++ G EVVESQL E L AE+ ISD+ AI W++ ++L+VR +NP+ Y + +G I +D R+ LQ L L+K LSR + + + P GR+M+K + F+T+K + P+ SL+ L+ C E+ +R+ EK+ LND+ R+RF +KG K+ K FVL L G+ + D ++ N +C
Sbjct: 11 DLPGNFRSAFSFRYFNSLQSECFPLCFHSDINMVISAPTGSGKTVLFELCILRLLSKSISKEGRFLHAKGALKTVYISPSKALVQEKLRDWNQKFNS-WGISCLELTGDNETYSTRNIQDADIILTTPEKFDAVSR-YRVTSGGLGFFGDIALVLIDEVHLLN-DPRGAALEAIVSRIKILSSNHEL--RSSPLASVRLLAVSATIPNIEDLAEWLNVPTAGIKKFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTALTYGYSNPFI-------KSREQLERLREASPMCSDKQMQSYILQ---GVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYVRMKKNPENYA--IKKG-IPKD--------------RVEKHLQE---LCLQKINELSRYQMIWTDTDGFVLKPEEPGRLMTKYYLKFDTMKYIINAPTSYSLDEALHIVCRAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDNKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLSMTQDANSIC 649
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|567141625|ref|XP_006395405.1| (hypothetical protein EUTSA_v10003551mg [Eutrema salsugineum] >gi|557092044|gb|ESQ32691.1| hypothetical protein EUTSA_v10003551mg [Eutrema salsugineum]) HSP 1 Score: 393.66 bits (1010), Expect = 2.257e-119 Identity = 246/674 (36.50%), Postives = 376/674 (55.79%), Query Frame = 0
Query: 48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQE---DEGTG-NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWR---DNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSN--IQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
+L G FR+ + +R N +QS +P+CF++D N+VI+APTG GKT+ E I RLL + +EG + + K VY++P KAL Q++L DW ++F + +G+ C ELTGD + + + + +ILTTPEKFDAVSR +R L + LVLIDE H L DPRG+ALEA++ R++++ S+ + P + +R+LA SAT+PN+ED+ WL+ P F RPV L V GYA A N FLF++ L+ E++ ++S+GK+ LVFC ++KGA+ A KLA+ G N + +S+++LE R ++ + +++ +L V +H+ GL +DR+ VE LF G ++ LC+T+TLA GIN PA +I T + Y + S +LQM GRAGRP DD G+ +IMT +E +Y ++ G EVVESQL E L AE+ +SD+ AI W++ ++L+VR +NP+ Y + +G I +D R+ LQ L L+K LSR + + + P GR+M+K + F+T+K + P+ SL+ L+ C E+ +R+ EK+ LND+ R+RF SKG K+ K FVL L G+ + D ++ N +C
Sbjct: 11 DLPGNFRSAFSFRYFNSLQSECFPLCFHSDINMVISAPTGSGKTVLFELCILRLLSKSISNEGRFLHAKGALKTVYISPSKALVQEKLRDWNQKFNS-WGISCLELTGDNETYSTKNIQDADLILTTPEKFDAVSR-YRVTSGGLGFFSDIALVLIDEVHLLN-DPRGAALEAIVSRIKILSSNHELSSS--PLASVRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQNYIYEILMQFSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFI-------KSREQLERLREASPMCSDKQMQSYILQ---GVGYHNGGLCQKDRSLVEGLFLSGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTVSDVSRAIEWMKCSYLYVRMKKNPENYA--IKKG-IPKD--------------RVEKHLQE---LCLQKINELSRYQMIWTDTDGFVLKPEEPGRLMTKYYLKFDTMKYIIHAPTGYSLDEALHIVCRAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDSKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLSMTQDANSIC 649
BLAST of EWM28662.1 vs. NCBI_GenBank
Match: gi|297818370|ref|XP_002877068.1| (DExH-box ATP-dependent RNA helicase DExH17 [Arabidopsis lyrata subsp. lyrata] >gi|297322906|gb|EFH53327.1| rock-N-rollers [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 392.889 bits (1008), Expect = 4.213e-119 Identity = 244/674 (36.20%), Postives = 377/674 (55.93%), Query Frame = 0
Query: 48 ELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQED---EGTG-NGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGD--SAGMREVAASQIILTTPEKFDAVSRDWR---DNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNKQLGRGGMQGRSQQRLEAERFSN--IQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRLEKTVGLSRDGAPIDNLETENIVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVC-NPVRKAEKRPLNDLLK----RVRF----SKGLGIKKCTHPSHKAFVLVQACL-GNLEIVDFTLKVSDNPMC 700
+L G FR+ + +R N +QS +P+CF++D N+VI+APTG GKT+ E I RLL + EG + + KAVY++P KAL Q++L DW ++F + +G+ C ELTGD + R + + IILTTPEKFDAVSR +R L + LVLIDE H L DPRG+ALEA++ R++++ S+ + + P + +R+LA SAT+PN+ED+ WL+ P F RPV L V GYA A N FLF++ L+ +++ +YS+GK+ LVFC ++KGA+ A KLA+ G N + +S+++LE R ++ + +++ +L V +H+ GL +DR+ VE LF G ++ +C+T+TLA GIN PA +I T + Y + S +LQM GRAGRP DD G+ +IMT +E +Y ++ G EVVESQL E L E+ ISD+ AI W++ ++L+VR +NP+ Y + +G I +D + ++L+ L+ + EL + + DG + P GR+M+K + F+T+K + P+ SL+ L+ C E+ +R+ EK+ LND+ R+RF +KG K+ K FVL L G+ + D ++ N +C
Sbjct: 11 DLPGNFRSAFSFRYFNSLQSECFPLCFHSDINMVISAPTGSGKTVLFELCILRLLSKSIAKEGMFLHAKGALKAVYISPSKALVQEKLRDWNQKFNS-WGISCLELTGDNETYSTRNIQDADIILTTPEKFDAVSR-YRVTSGGLGFFSDIALVLIDEVHLLN-DPRGAALEAIVSRIKILSSNHEL--RSSPLASVRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFI-------KSREQLERLREASPMCSDKQMQSYILQ---GVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTTEIVQLTISDITRAIEWMKCSYLYVRMKKNPENYA--IKKG-IPKD---QVEKHLQELCLQKINELSQYQM------IWTDTDGFVLK--------PEEPGRLMTKYYLKFDTMKYIINAPTGYSLDEALHIVCRAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDNKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLSMTQDANSIC 649 The following BLAST results are available for this feature:
BLAST of EWM28662.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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