rna201, rna201 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna201
Unique Name	rna201
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1638
Alignment location	CM002455.1:521940..523505 +

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent rna helicase ddx49-like protein
Orig transcript id	gnl\|cribi\|Naga_100013g16.9809.mrna
Orig protein id	gnl\|cribi\|Naga_100013g16.9809
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:521940..523505 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g16	gene192	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna201	rna201-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30521.1	cds201	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:521940..523505+
coding sequence from alignment at CM002455.1:521940..523505+

mRNA sequence

>rna201 ID=rna201|Name=rna201|organism=Nannochloropsis gaditana|type=mRNA|length=1638bp
ATCAACCAACCTCCTCCTCGTGTGGCAGGCCTCGGTAGACCGTGACGCCG
TACCCAGTCTAACCACGACCAGCGTTATTTCACTCCTCTTGCCATTTACA
TACTTTCTTCGCAGCGATATCAGACAGATGGCTTTAATGCCACGGTCTCG
GAGACGCCGCTGCGACCAGAAAGGCAGGCCTCTATGGTGATCATCCAGTG
ACGCAAAACCTCACACCTCCTGGTCCCGCCCATCGATGCGCCGCCCTAAT
CATCGCGTAGCAGGCTGGAAGCCCTTCGATGGTCTTGAGTGTGGTAGACG
GACAGATAACAATTGCTTCTTATCACTTGCGTCGCGCTTCCGGGGATGGT
CTACCAAGAAATGCTATTACTTGTTCGCCGTCTTCATAGTGGGCTGCCTT
CTACTGCACTTGTCACACACGGCCTTGCAAATGAACTTCCGAGTCGATTT
TCTCCCGACAACTTCACCAACGGGTGGACCATTTGGGAGTACATACACAA
TCCGCGTGAACACCTTTCGGCGGAATGACATGCTGAAAAGGTTTTTGGGC
CATTTCGCAAGGTGCCCTAACGTACAGGCAATCCAAGTTATTTGGTCCGA
CCAAGGATACGACCCTCCCTCTCTCATGGACTGGGCAATCCCCCTTTCAA
CACAAGAATTGTCAAAAGTAGCATTCGAAGTCCAGCCTACGGATAGCCTC
AACAATCGCTTCCGGGCACTTTTGCCTGTACCCACTCCGGCAGTCTTGTC
CTTGGATGACGATCTGGTAATCCCATGCGAGACCTTGGATTTTGCCTATT
CAATATGGCAAGCGGCGCCTCAATCACTGGTTGGGTTCACACCCCGTTTG
GTAACCTGGGACGGGGAGACTGCCTCTGGCGTCGTCGCTGGGAAGAAAGT
GACGGAATTGGAGGCAGGAGAGGGGGCAGGCCCCGGTCCCGGTGCTGCTG
GCAGCTACCGATACCTGAGCTCTTTCAAGCACGTCTGGTGGCACGGACGC
TACAATGTGATACTGACTAAATGCTGCTTTCTGCACAGGGACTTCCTCTC
CCTGTATTTCTCGTCCCTAACGCCTGAGGTCTTGCAGTACATCGACGACC
GCAGAAATTGTGAGGATATCGCTATGCAGTTCGTGGTCGCCAACCACACG
CGTGGGGCCCCTCCGGTCTGGGTTCAGGCGCGATTTACAGATTACGGGCA
AAAGTCAGGCATCAGTCAGGGAGAGGACCACGCGCGGGAGAGGGGAGCGT
GCGTGGGGCGTTTGGTGAAGGAGTTTGGGAGCCTATGTCTCACCACGACG
TCGCTCAAAGCCATAGATGCCCGAAGGTCCTGGATCTGGTAGCTCCAGCG
ACCTTTCGAAAACTTAGAAATCGCCATCTCACCATTGGCAGGTCTTCGCC
TTGAAAAGCAGCTATTTTTGTTCCTGCGGCTCAGGTGCTGCACGCTAGAG
CTTGGGTTGTCTCCAGGGCTCTTCCTGTCAGGCGGGCCTTGTCAATGCCG
AAGCATTATGTAATCTAGGGCCCCAGTGTCATTGTGGCATTGATGCCGTG
TTTGCTTGCATAGATGAACACAAATAAGAAGAAGTTCCTTCGGCATGTAT
CAAAAGTACGCACGCAATTAATACCAGCTTCCAGATCA

protein sequence of rna201

>rna201-protein ID=rna201-protein|Name=rna201|organism=Nannochloropsis gaditana|type=polypeptide|length=521bp
MVSLFATSSKVLRKASKKRPRSVVEEEAKVGTAPAVGGSQLKGVGRESVQ
EAGVDAGSDSLSSSCWTQLGLAPWIQGACNAMGFKRPTPVQEQCIPSILQ
GRDVMGCAETGSGKTAAFALPMLHRLSEDPYGVFGLVLTPTRELAIQIAE
QFQALGAPLGLRHCVVIGGESMVQQAVELARRPHVVVATPGRLWDHLRGA
APPDLSKATFLVLDEADRLFCDGFEQHLAGILAAMRHPRRQTLLFSATMT
NALKDLKRLTRVQPVLFDLTRARALPASLQEEYLFVPAQVKMCYLIRLLQ
KLLLGVGTETDSVRGRRGAKGAGDESGTAGPVKSAMVFVGTCQRCQEVAE
VLLEAGLTAVSLHSVLSQKRRLAALGKFKSSLVRVLVSTDVASRGLDIPD
VGLVLNYDLPRLSTDYIHRVGRTARAGRYGRAVSMVTQYDVALLQGVEAV
TGRKMPACEEVTEEEVVRLLNPVAKATRAARMRLMEVGFDEQVHEHLERK
KRGKKDRQRKRRRAGKKEGGD

mRNA from alignment at CM002455.1:521940..523505+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna201 ID=rna201|Name=rna201|organism=Nannochloropsis gaditana|type=mRNA|length=1566bp|location=Sequence derived from alignment at CM002455.1:521940..523505+ (Nannochloropsis gaditana)
ATGGTATCACTATTCGCGACTTCCTCGAAGGTACTTAGAAAAGCAAGCAA
AAAGCGGCCCCGGTCAgtagtggaggaggaagctaaGGTTGGCACGGCGC
CTGCGGTGGGGGGCTCCCAGCTTAAAGGCGTAGGACGAGAGTCAgtgcag
gaggcgggcgtggacgcgGGCTCGGACTCATTGTCGTCAAGCTGTTGGAC
ACAACTGGGACTGGCCCCTTGGATCCAAGGAGCATGTAATGCTATGGGCT
TTAAACGCCCGACACCGGTGCAAGAACAGTGCATTCCTTCCATTttgcaa
gggagggacgtgatGGGATGTGCGGAAACCGGTTCGGGAAAGACGGCagc
ctttgccctccccaTGCTGCACCGCCTGTCAGAAGACCCTTACGGGGTGT
TTGGGCTGGTCCTGACCCCCACGCGGGAGCTCGCTATTCAGATCGCAGAG
CAATTCCAGGCACTGGGCGCGCCGCTAGGCCTGAGGCACTGCGTGGTCAT
AGGCGGGGAGAGCATGGTCCAACAAGCGGTAGAGCTGGCTCGGCGCCCTC
ATGTAGTCGTGGCGACACCGGGACGGCTGTGGGATCATCTTCGGGGCGCG
GCCCCACCTGATCTGAGCAAAGCCACGTTCCTCGTGCTGGATGAGGCGGA
CCGCCTGTTCTGCGACGGCTTCGAGCAGCACTTGGCCGGGATACTGGCGG
CCATGCGGCATCCTCGCCGCCAGACGCTCCTCTTCAGCGCGACCATGACC
AATGCCTTGAAGGACTTGAAGCGGCTGACCCGCGTGCAGCCCGTGCTCTT
CGACCTGACGCGGGCGCGGGCTTTGCCGGCCTCTCTGCAGGAGGAAtacc
tcttcgtccccgcccagGTCAAGATGTGCTACTTGATCCGGCTCCTTCAG
AAGCTTTTGCTCGGCGTTGGCACAGAGACGGACAGCGtgcggggaagacg
gggtGCGAAGGGCGCCGGGGACGAGAGTGGTACCGCGGGCCCTGTGAAAT
CTGCCATGGTCTTCGTAGGCACTTGCCAACGCTGTCAGGAGGTTGCCGAG
GTACTGCTGGAGGCAGGGCTCACggccgtctccctccactcaGTCCTCAG
CCAGAAACGGCGTCTGGCGGCCCTGGGCAAGTTCAAGAGCTCCTTGGTGC
GTGTGCTGGTGAGCACGGACGTGGCGAGTCGGGGCCTCGACATCCCCGAC
GTGGGCCTGGTCCTCAACTACGACCTCCCGCGGCTCTCGACCGACTACAT
CCACCGGGTCGGGCgcacggccagggcgggaCGGTACGGGCGGGCGGTGT
CCATGGTCACCCAGTACGATGTGGCCTTGTTGcaaggggtggaggccgtA
ACGGGGCGGAAAATGCCGGCGTgcgaggaggtgacggaggaggaggtggt
gaggcTCTTGAAccccgtggccaaggcaACGAGGGCGGCGCGGATGAGGC
TGATGGAGGTGGGCTTTGACGAGCAGGTCCATGAGCATTTGGAGCGGAAG
AAGCGGGGCAAGAAGGACAGGCaacgaaagaggaggagggcgggcaagaa
ggaagggggggattga

Coding sequence (CDS) from alignment at CM002455.1:521940..523505+

>rna201 ID=rna201|Name=rna201|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002455.1:521940..523505+ (Nannochloropsis gaditana)
ATGGTATCACTATTCGCGACTTCCTCGAAGGTACTTAGAAAAGCAAGCAA
AAAGCGGCCCCGGTCAgtagtggaggaggaagctaaGGTTGGCACGGCGC
CTGCGGTGGGGGGCTCCCAGCTTAAAGGCGTAGGACGAGAGTCAgtgcag
gaggcgggcgtggacgcgGGCTCGGACTCATTGTCGTCAAGCTGTTGGAC
ACAACTGGGACTGGCCCCTTGGATCCAAGGAGCATGTAATGCTATGGGCT
TTAAACGCCCGACACCGGTGCAAGAACAGTGCATTCCTTCCATTttgcaa
gggagggacgtgatGGGATGTGCGGAAACCGGTTCGGGAAAGACGGCagc
ctttgccctccccaTGCTGCACCGCCTGTCAGAAGACCCTTACGGGGTGT
TTGGGCTGGTCCTGACCCCCACGCGGGAGCTCGCTATTCAGATCGCAGAG
CAATTCCAGGCACTGGGCGCGCCGCTAGGCCTGAGGCACTGCGTGGTCAT
AGGCGGGGAGAGCATGGTCCAACAAGCGGTAGAGCTGGCTCGGCGCCCTC
ATGTAGTCGTGGCGACACCGGGACGGCTGTGGGATCATCTTCGGGGCGCG
GCCCCACCTGATCTGAGCAAAGCCACGTTCCTCGTGCTGGATGAGGCGGA
CCGCCTGTTCTGCGACGGCTTCGAGCAGCACTTGGCCGGGATACTGGCGG
CCATGCGGCATCCTCGCCGCCAGACGCTCCTCTTCAGCGCGACCATGACC
AATGCCTTGAAGGACTTGAAGCGGCTGACCCGCGTGCAGCCCGTGCTCTT
CGACCTGACGCGGGCGCGGGCTTTGCCGGCCTCTCTGCAGGAGGAAtacc
tcttcgtccccgcccagGTCAAGATGTGCTACTTGATCCGGCTCCTTCAG
AAGCTTTTGCTCGGCGTTGGCACAGAGACGGACAGCGtgcggggaagacg
gggtGCGAAGGGCGCCGGGGACGAGAGTGGTACCGCGGGCCCTGTGAAAT
CTGCCATGGTCTTCGTAGGCACTTGCCAACGCTGTCAGGAGGTTGCCGAG
GTACTGCTGGAGGCAGGGCTCACggccgtctccctccactcaGTCCTCAG
CCAGAAACGGCGTCTGGCGGCCCTGGGCAAGTTCAAGAGCTCCTTGGTGC
GTGTGCTGGTGAGCACGGACGTGGCGAGTCGGGGCCTCGACATCCCCGAC
GTGGGCCTGGTCCTCAACTACGACCTCCCGCGGCTCTCGACCGACTACAT
CCACCGGGTCGGGCgcacggccagggcgggaCGGTACGGGCGGGCGGTGT
CCATGGTCACCCAGTACGATGTGGCCTTGTTGcaaggggtggaggccgtA
ACGGGGCGGAAAATGCCGGCGTgcgaggaggtgacggaggaggaggtggt
gaggcTCTTGAAccccgtggccaaggcaACGAGGGCGGCGCGGATGAGGC
TGATGGAGGTGGGCTTTGACGAGCAGGTCCATGAGCATTTGGAGCGGAAG
AAGCGGGGCAAGAAGGACAGGCaacgaaagaggaggagggcgggcaagaa
ggaagggggggattga

Synonyms

Publications