rna200, rna200 (mRNA) Nannochloropsis gaditana

Overview
Namerna200
Unique Namerna200
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1828
Alignment locationCM002455.1:520080..521717 -

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Properties
Property NameValue
ProductEXTL2, alpha-1,4-N-acetylhexosaminyltransferase
Orig transcript idgnl|cribi|Naga_100013g17.9752.mrna
Orig protein idgnl|cribi|Naga_100013g17.9752
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:520080..521717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g17gene191Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30464.1cds200Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna200rna200-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna200 ID=rna200|Name=rna200|organism=Nannochloropsis gaditana|type=mRNA|length=1828bp
CGTTTCGGTCCCATCGACATTCACAACACAGGTTGAAGGATCATGGTTAT
AACGTCCTCCTCCCTGCTAGGTGCCGATGAACTCGTGACACCAGAGTTGG
AGCGAACTTTCCGTGGTCATAGAGCTGGTGTCTTGAGCCTCGCGTTCAGT
CCCACGATCAAGCAGCTCGCTTCAGGTGTTGAGGACGGCACTGTCCATGT
CTGGCACTTCAAGCCCGAACAGCGCGCTTTCCGGTACCCGGGTCATAAAG
GACCCGTACATTCTGTGCAATATTCCCCATCGGGCCGCTATTTGGCCTCG
GGAGGGGGGGATGCCATCGTTAAATTATGGGAGCCATCCGCACGAGGACG
AGCCTTGGTTCTCAAAAATCATTCGCGTGCGGTGCGCTCTGTGGCATTTT
CAGCGGACAGTCGTCTATTGCTGACTGGGTCAGACGATAAGACCGTCAAA
ATCATATCGTTGCACGACCGCCGCTTTCGAGGTAGCTTGCAAGGACACAG
CCATTGGGTGCGCTCAGCCACCTTCAGCCCTGATGCCCTGATGGCGGCGT
CCGGATCCGAGGACCGTACCGTCCGCCTGTGGGACGTGCAGAACCGGGAG
TGTCTGGGCATTTTGATGGAGGCGAAAGACGCGGTGTGTGCGGTGGCCTT
CCATCCGGACGGTGCCTGTCTGGCTGCGGGGGGCCGGGATCGGTGTCTAC
GCATCTGGGATACGCGGACGCAGGATCTGGTCCAGCAATACGCGCCCGCG
CATGCAGAGGGTATCAATTCCGTGGCCTTCCACTCGTCGGGCAACTTTGT
CCTGACATCTTCTCAAGACGGCACCTTAAAGGTCTGGGACGTGCGGGAAG
CTCGCTTGCTATTCACGGTGCACGGGCATCGGGGACGCATCGCTCAAGCC
GCCTTCAGTCCGGACGCCGACAGCTCCCTATTCGCCTCTGCGGGGATGCA
AGACAGGACGGTCATGGTTTGGCGTTCGAATCTAGCGCCCTACAACCGGG
TCCGCACCACGGTGACCGCAAAAGAGGCCGACGCCGATTGGCCCTTTTCC
TCCTCCACATCTCCCGCCCCTCACGCTCGCCCGCCCTACATACCTCAACG
CTACGCTTATGCCCATACGTATGAAATGGACGTGCCCGTGCCTGCGTATC
AGCGACCATCTCCGGTCGCAGGAAGAGATCAATATTGGGAAACAGAGGAG
AGGGAGGGGGGACAGCTCTCCGCATTCAGTAGAAATCGAGGAGAGCCTCA
GAGGGGAGAGCAGGCAGAGACATCGAAAGCCTGGCAGCAGGACTATGTTG
TCGATTACCACGTTGAAAAACCCTCGGCGCCCCCTTTGCTCGCGGAGTTG
GAGGAGCAGGAGACCAGAGAAGAGGAGAGGGCAAGGACTGCGGTCCCTAC
GGCCGCCCCAGCATCATCTTTTCCTGGAATGCATCAAGACAGCAGTTCAC
AAGGCCGAGTCAAAGCGCAGGCAGTCTCTGGGGCCGGGTGGCAACGGAAA
GCAAGGGAGAAACTAGGGGTATCAGGGCACTGCGAAGCTGAGGAAGGGGA
GAGGGATTTCAGCCCGACGCACTTAACCCGGACACTCTCGCTTTTGGCGG
ACAGGATGCGGACGATCGAGGAGAAGCTCGAGAAGTTAAGCCTGGGACCC
GGCGTCGGGAAAAATGACGTGCTAAACGGCGAAGACGTGCCAACGAGGGC
GGTCTGCCGTCAGGAACACAGCGATTCCCGGGACAGTAACGACGAGGTGT
ACCACGTTATCGCGGAATGAGGTAACTTGACCTTCAAAAATTAAGTCAAA
AGAATTATGTTTATACGTCTGCAAGACC
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protein sequence of rna200

>rna200-protein ID=rna200-protein|Name=rna200|organism=Nannochloropsis gaditana|type=polypeptide|length=368bp
MRRPNHRVAGWKPFDGLECGRRTDNNCFLSLASRFRGWSTKKCYYLFAVF
IVGCLLLHLSHTALQMNFRVDFLPTTSPTGGPFGSTYTIRVNTFRRNDML
KRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQELSKVAFEVQ
PTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVG
FTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHV
WWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFV
VANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSL
CLTTTSLKAIDARRSWIW
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mRNA from alignment at CM002455.1:520080..521717-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna200 ID=rna200|Name=rna200|organism=Nannochloropsis gaditana|type=mRNA|length=1638bp|location=Sequence derived from alignment at CM002455.1:520080..521717- (Nannochloropsis gaditana)
ATCAACCAACCTCCTCCTCGTGTGGCAGGCCTCGGTAGACCGTGACGCCG
TACCCAGTCTAACCACGACCAGCGTTATTTCACTCCTCTTGCCATTTACA
TACTTTCTTCGCAGCGATATCAGACAGATGGCTTTAATGCCACGGTCTCG
GAGACGCCGCTGCGACCAGAAAGGCAGGCCTCTATGGTGATCATCCAGTG
ACGCAAAACCTCACACCTCCTGGTCCCGCCCATCGATGCGCCGCCCTAAT
CATCGCGTAGCAGGCTGGAAGCCCTTCGATGGTCTTGAGTGTGGTAGACG
GACAGATAACAATTGCTTCTTATCACTTGCGTCGCGCTTCCGGGGATGGT
CTACCAAGAAATGCTATTACTTGTTCGCCGTCTTCATAGTGGGCTGCCTT
CTACTGCACTTGTCACACACGGCCTTGCAAATGAACTTCCGAGTCGATTT
TCTCCCGACAACTTCACCAACGGGTGGACCATTTGGGAGTACATACACAA
TCCGCGTGAACACCTTTCGGCGGAATGACATGCTGAAAAGGTTTTTGGGC
CATTTCGCAAGGTGCCCTAACGTACAGGCAATCCAAGTTATTTGGTCCGA
CCAAGGATACGACCCTCCCTCTCTCATGGACTGGGCAATCCCCCTTTCAA
CACAAGAATTGTCAAAAGTAGCATTCGAAGTCCAGCCTACGGATAGCCTC
AACAATCGCTTCCGGGCACTTTTGCCTGTACCCACTCCGGCAGTCTTGTC
CTTGGATGACGATCTGGTAATCCCATGCGAGACCTTGGATTTTGCCTATT
CAATATGGCAAGCGGCGCCTCAATCACTGGTTGGGTTCACACCCCGTTTG
GTAACCTGGGACGGGGAGACTGCCTCTGGCGTCGTCGCTGGGAAGAAAGT
GACGGAATTGGAGGCAGGAGAGGGGGCAGGCCCCGGTCCCGGTGCTGCTG
GCAGCTACCGATACCTGAGCTCTTTCAAGCACGTCTGGTGGCACGGACGC
TACAATGTGATACTGACTAAATGCTGCTTTCTGCACAGGGACTTCCTCTC
CCTGTATTTCTCGTCCCTAACGCCTGAGGTCTTGCAGTACATCGACGACC
GCAGAAATTGTGAGGATATCGCTATGCAGTTCGTGGTCGCCAACCACACG
CGTGGGGCCCCTCCGGTCTGGGTTCAGGCGCGATTTACAGATTACGGGCA
AAAGTCAGGCATCAGTCAGGGAGAGGACCACGCGCGGGAGAGGGGAGCGT
GCGTGGGGCGTTTGGTGAAGGAGTTTGGGAGCCTATGTCTCACCACGACG
TCGCTCAAAGCCATAGATGCCCGAAGGTCCTGGATCTGGTAGCTCCAGCG
ACCTTTCGAAAACTTAGAAATCGCCATCTCACCATTGGCAGGTCTTCGCC
TTGAAAAGCAGCTATTTTTGTTCCTGCGGCTCAGGTGCTGCACGCTAGAG
CTTGGGTTGTCTCCAGGGCTCTTCCTGTCAGGCGGGCCTTGTCAATGCCG
AAGCATTATGTAATCTAGGGCCCCAGTGTCATTGTGGCATTGATGCCGTG
TTTGCTTGCATAGATGAACACAAATAAGAAGAAGTTCCTTCGGCATGTAT
CAAAAGTACGCACGCAATTAATACCAGCTTCCAGATCA
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Coding sequence (CDS) from alignment at CM002455.1:520080..521717-

>rna200 ID=rna200|Name=rna200|organism=Nannochloropsis gaditana|type=CDS|length=1107bp|location=Sequence derived from alignment at CM002455.1:520080..521717- (Nannochloropsis gaditana)
ATGCGCCGCCCTAATCATCGCGTAGCAGGCTGGAAGCCCTTCGATGGTCT
TGAGTGTGGTAGACGGACAGATAACAATTGCTTCTTATCACTTGCGTCGC
GCTTCCGGGGATGGTCTACCAAGAAATGCTATTACTTGTTCGCCGTCTTC
ATAGTGGGCTGCCTTCTACTGCACTTGTCACACACGGCCTTGCAAATGAA
CTTCCGAGTCGATTTTCTCCCGACAACTTCACCAACGGGTGGACCATTTG
GGAGTACATACACAATCCGCGTGAACACCTTTCGGCGGAATGACATGCTG
AAAAGGTTTTTGGGCCATTTCGCAAGGTGCCCTAACGTACAGGCAATCCA
AGTTATTTGGTCCGACCAAGGATACGACCCTCCCTCTCTCATGGACTGGG
CAATCCCCCTTTCAACACAAGAATTGTCAAAAGTAGCATTCGAAGTCCAG
CCTACGGATAGCCTCAACAATCGCTTCCGGGCACTTTTGCCTGTACCCAC
TCCGGCAGTCTTGTCCTTGGATGACGATCTGGTAATCCCATGCGAGACCT
TGGATTTTGCCTATTCAATATGGCAAGCGGCGCCTCAATCACTGGTTGGG
TTCACACCCCGTTTGGTAACCTGGGACGGGGAGACTGCCTCTGGCGTCGT
CGCTGGGAAGAAAGTGACGGAATTGGAGGCAGGAGAGGGGGCAGGCCCCG
GTCCCGGTGCTGCTGGCAGCTACCGATACCTGAGCTCTTTCAAGCACGTC
TGGTGGCACGGACGCTACAATGTGATACTGACTAAATGCTGCTTTCTGCA
CAGGGACTTCCTCTCCCTGTATTTCTCGTCCCTAACGCCTGAGGTCTTGC
AGTACATCGACGACCGCAGAAATTGTGAGGATATCGCTATGCAGTTCGTG
GTCGCCAACCACACGCGTGGGGCCCCTCCGGTCTGGGTTCAGGCGCGATT
TACAGATTACGGGCAAAAGTCAGGCATCAGTCAGGGAGAGGACCACGCGC
GGGAGAGGGGAGCGTGCGTGGGGCGTTTGGTGAAGGAGTTTGGGAGCCTA
TGTCTCACCACGACGTCGCTCAAAGCCATAGATGCCCGAAGGTCCTGGAT
CTGGTAG
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Synonyms
Publications