EWM30464.1, cds200 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|553195750|ref|XP_005856199.1| (glucuronyl/N-acetylglucosaminyl transferase EXT2 [Nannochloropsis gaditana CCMP526] >gi|422292847|gb|EKU20149.1| glucuronyl/N-acetylglucosaminyl transferase EXT2 [Nannochloropsis gaditana CCMP526] >gi|585113128|gb|EWM30464.1| EXTL2, alpha-1,4-N-acetylhexosaminyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0 Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0
Query: 1 MRRPNHRVAGWKPFDGLECGRRTDNNCFLSLASRFRGWSTKKCYYLFAVFIVGCLLLHLSHTALQMNFRVDFLPTTSPTGGPFGSTYTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQELSKVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
MRRPNHRVAGWKPFDGLECGRRTDNNCFLSLASRFRGWSTKKCYYLFAVFIVGCLLLHLSHTALQMNFRVDFLPTTSPTGGPFGSTYTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQELSKVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW
Sbjct: 1 MRRPNHRVAGWKPFDGLECGRRTDNNCFLSLASRFRGWSTKKCYYLFAVFIVGCLLLHLSHTALQMNFRVDFLPTTSPTGGPFGSTYTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQELSKVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|676397357|ref|XP_009041956.1| (hypothetical protein AURANDRAFT_39371 [Aureococcus anophagefferens] >gi|323447424|gb|EGB03345.1| hypothetical protein AURANDRAFT_39371 [Aureococcus anophagefferens]) HSP 1 Score: 227.254 bits (578), Expect = 2.247e-68 Identity = 138/351 (39.32%), Postives = 194/351 (55.27%), Query Frame = 0
Query: 36 RGWSTKKCYYLFAVFIVGCLLLHLSHTALQMNF-RVDF--LPTTSPTGGPFGSTYTI----RVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPS-LMDWAIPLSTQELSKVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVL---QYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQK-------SGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
RG+ST + + +G + LS + L ++F RV F + + +P GG ++ RVNTFRRND+L RF+ H+ RC + I VIWSD PP L+ A T + V E+ DSLNNRF+ L T A+ S+DDDL++ CE L IW +AP+ +VG PRLV+ D A G +RYL + HVWW+G Y+++LTK C LHRD+L FSS +P ++ +++D RRNCED+ M F+VAN TR APP+W +A ++DYGQ +GIS G DH RG C+ + FG++ L T+ K +DAR W+W
Sbjct: 11 RGYSTST-MLVSSARALGFIAATLSLSTLLVSFCRVQFSVVSSDTPPGGHLRRVASVGCSVRVNTFRRNDLLDRFVKHYERCGAAREIVVIWSDAELAPPEWLVLRADRSPTADEVAVRVELFDVDSLNNRFKLLETPATDAIFSVDDDLIVSCEVLQNMIDIWASAPRQMVGVAPRLVSRD-------------------------TNANGGWRYL-RWWHVWWNGAYSLVLTKVCILHRDYLD-AFSSRSPALVSAREHVDSRRNCEDLLMSFIVANATR-APPLWFRAPYSDYGQSILSFGRHAGISSGVDHVETRGDCIATFARLFGTMPLVTSHSKLVDARSEWLW 332
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|586717746|ref|XP_006848148.1| (glycosyltransferase family 64 protein C4 [Amborella trichopoda] >gi|548851453|gb|ERN09729.1| hypothetical protein AMTR_s00029p00228900 [Amborella trichopoda]) HSP 1 Score: 219.55 bits (558), Expect = 2.274e-65 Identity = 124/349 (35.53%), Postives = 188/349 (53.87%), Query Frame = 0
Query: 31 LASRFR----GWSTKKCYYLFAVFIVGCLLLHLSHTALQMNFRVDFLPTTSPTGGPFGSTYTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPS-----LMDWAIPLSTQELSKV--AFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
L R R G + + L F++ L++ A M +R L S P G YTI +NT++RND+LK+ + H++ C + +I ++WS+ DPP+ + + L + +V F++ DSLNNRF+ + + T A+ S+DDD+V PC T++FAYS+WQ+AP ++VGF PR+ D K E E Y + VWW G Y+++L+K F HR +L +Y + + + Y+ RNCEDIAM F+VAN T GAPP+WVQ + + G +GIS + H+ R CV R V E+G + L +S+KA+D+RR W W
Sbjct: 12 LVQRLRQALIGLGSVRVKLLLPCFVLFMLVVVAGRAANFMGWRHKPLKQGSL---PLGKGYTILINTWKRNDLLKQSVEHYSSCSGLHSIHIVWSEP--DPPTDSLRGFLHHVLQLKSINGREVDLHFDINQEDSLNNRFKVIKDLETDAIFSIDDDVVFPCPTVEFAYSVWQSAPDTMVGFVPRMHWLD-----------KTKEDEM-------------YYAYGGWWSVWWMGTYSMVLSKAAFFHRKYLDMYTNQMPASIRDYVTRNRNCEDIAMSFLVANAT-GAPPIWVQGKIFEIGS-TGISSLQGHSERRSQCVNRFVIEYGHMPLVESSVKAVDSRRRWFW 329
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|835961542|ref|XP_012700805.1| (PREDICTED: glycosyltransferase family 64 protein C4 [Setaria italica]) HSP 1 Score: 219.164 bits (557), Expect = 4.043e-65 Identity = 112/282 (39.72%), Postives = 166/282 (58.87%), Query Frame = 0
Query: 87 YTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQELSKVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
+ + +NT+RR +L+R + H+A CP V A+ V+WS+ PP + A+ L+ V F++ DSLNNRFR + + AV S+DDDL++PC TL FA+ +W++AP ++VGF PR+ W A P G YRY S+ VWW G Y+++L+K F HR +L LY + + P + +Y+++ RNCEDIAM F+VAN T GAPP+WVQ R + G SGIS + H +R C+ +G + L T++KA+D+R+SW W
Sbjct: 80 FAVVINTWRRYALLRRSVAHYAACPGVDAVHVVWSEP-RPPPEHLRRAV-LNGTRRGIVRFDINGIDSLNNRFRPIRGLAADAVFSVDDDLIVPCSTLRFAFDVWRSAPSAMVGFVPRM-HWL---------------------ADPRGGGTKEYRY-GSWWSVWWTGTYSMVLSKASFFHRQYLDLYTNQMLPSIRKYVNENRNCEDIAMSFLVANAT-GAPPIWVQGRIFEIGS-SGISSLKGHGLQRSRCLNTFAAMYGHMPLVATTVKAVDSRKSWFW 334
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|944247822|gb|KQL12116.1| (hypothetical protein SETIT_006792mg [Setaria italica]) HSP 1 Score: 219.164 bits (557), Expect = 6.874e-65 Identity = 112/282 (39.72%), Postives = 166/282 (58.87%), Query Frame = 0
Query: 87 YTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQELSKVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
+ + +NT+RR +L+R + H+A CP V A+ V+WS+ PP + A+ L+ V F++ DSLNNRFR + + AV S+DDDL++PC TL FA+ +W++AP ++VGF PR+ W A P G YRY S+ VWW G Y+++L+K F HR +L LY + + P + +Y+++ RNCEDIAM F+VAN T GAPP+WVQ R + G SGIS + H +R C+ +G + L T++KA+D+R+SW W
Sbjct: 94 FAVVINTWRRYALLRRSVAHYAACPGVDAVHVVWSEP-RPPPEHLRRAV-LNGTRRGIVRFDINGIDSLNNRFRPIRGLAADAVFSVDDDLIVPCSTLRFAFDVWRSAPSAMVGFVPRM-HWL---------------------ADPRGGGTKEYRY-GSWWSVWWTGTYSMVLSKASFFHRQYLDLYTNQMLPSIRKYVNENRNCEDIAMSFLVANAT-GAPPIWVQGRIFEIGS-SGISSLKGHGLQRSRCLNTFAAMYGHMPLVATTVKAVDSRKSWFW 348
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|1040922106|ref|XP_017223298.1| (PREDICTED: glycosyltransferase family 64 protein C4-like [Daucus carota subsp. sativus]) HSP 1 Score: 216.468 bits (550), Expect = 3.989e-64 Identity = 111/333 (33.33%), Postives = 179/333 (53.75%), Query Frame = 0
Query: 42 KCYYLFAVFIVGCLLLHLSHTALQMNFRVDFLPTTSPTGGPFGSTYTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQELS------KVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
K + F V L + + T + + D G Y + +NT++RND+LK+ + H+ CP + +I ++WS+ SL+ + + L Q + ++ F++ DSLNNRF+ + + AV S+DDD++ PC +++ AYS+W++AP ++VGF PR + W ++ G Y Y + VWW GRY+++L+K F H+ +LSLY + + + +Y RNCEDIAM F+VAN T GAPP+WV+ + + G +GIS H +R CV R V E+G + L +TS+KA+D+R +W W
Sbjct: 26 KMRLILGCFTVAMLFVLANRTPSYLGWDTDRSFAPESPGSTSRKGYALLINTWKRNDLLKQSISHYTSCPGLDSIHIVWSEPDAPSDSLVKF-LNLVIQSKANNGRQIELKFDINKEDSLNNRFKEIKDLKADAVFSIDDDIIFPCSSVELAYSVWRSAPDAMVGFVPR-IHWIDQSK----------------------GNVNQYMY-GGWWSVWWMGRYSMVLSKAAFFHKKYLSLYTNEMPSSIREYTTKNRNCEDIAMSFLVANAT-GAPPIWVKGKIYEIGS-TGISSISGHTEKRTQCVNRFVAEYGHMPLVSTSVKAVDSRETWFW 331
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|747075763|ref|XP_011084931.1| (glycosyltransferase family 64 protein C4 [Sesamum indicum]) HSP 1 Score: 216.083 bits (549), Expect = 5.193e-64 Identity = 108/289 (37.37%), Postives = 169/289 (58.48%), Query Frame = 0
Query: 87 YTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPS-----LMDWAIPLSTQELSKVA--FEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
YT+ +NT++RND+LK+ + H+A CP + +I ++WS+ DPPS ++ I L+++ ++ F++ DSLNNRF+ + + + V S+DDD++ PC T++FA+S+WQ+AP ++VGF PR+ D G Y Y S + VWW G Y++IL+K F H+ +LS+Y + + + +Y+ RNCEDIAM F+VAN T GAPP+WV+ + G +GIS H +R CV E+G + L +TS+KA+D+R SW W
Sbjct: 66 YTLLINTWKRNDLLKQSISHYASCPGLDSIHIVWSEP--DPPSESLINFLNHVIKLNSKHHREIVLKFDINKEDSLNNRFKEIKDLKSDVVFSIDDDIIFPCTTVEFAFSVWQSAPDTMVGFVPRIHWIDKSN-----------------------GNQDKYTY-SGWWSVWWTGTYSMILSKAAFFHKKYLSMYTNEMPSSIREYVTKNRNCEDIAMSFLVANAT-GAPPIWVKGSIFEIGS-TGISSLGGHHEKRTQCVNWFAAEYGRMPLVSTSVKAVDSRCSWFW 326
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|1002858696|ref|XP_015693703.1| (PREDICTED: glycosyltransferase family 64 protein C4, partial [Oryza brachyantha]) HSP 1 Score: 215.698 bits (548), Expect = 5.688e-64 Identity = 124/335 (37.01%), Postives = 178/335 (53.13%), Query Frame = 0
Query: 47 FAVFIVGCLLLHLSHT-----ALQMNF----RVDFLPTTSPTGGPFGSTYTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQE----LSKVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
F F + CLL + T AL + + SP GG G Y + +NT++R D+LKR + H++ C V A+ V+WS+ L+ + S + ++V F + DSLNNRFR + + AV S+DDDL++PC TL FA+ +WQ AP ++VGF PR+ W + S YRY S+ VWW G Y+++L+K F HR +L LY + + P + Y+++ RNCEDIAM F+VAN T GAPPVWVQ R + G SGIS + H +R C+ +G + L T+LKA+D+R SW W
Sbjct: 15 FTAFFIACLLAVAAVTTTFAFALALTLHRPDQAAAAYAASPRGG--GGGYAVVINTWKRYDLLKRSVAHYSGCAGVDAVHVVWSEPQEPTEELLGSILNCSRRGQGGGAAEVRFVINNEDSLNNRFRPIEGLTADAVFSVDDDLIVPCSTLWFAFGVWQGAPSAMVGFVPRM-HWLADPGSNT----------------------KEYRY-GSWWSVWWTGTYSMVLSKASFFHRQYLDLYTNHMLPSIRNYVNENRNCEDIAMSFLVANAT-GAPPVWVQGRIFEIG-SSGISSLKGHDLQRSKCLKTFSAMYGHMPLVATTLKAVDSRTSWFW 321
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|747059753|ref|XP_011076273.1| (glycosyltransferase family 64 protein C4-like isoform X1 [Sesamum indicum]) HSP 1 Score: 215.698 bits (548), Expect = 1.670e-63 Identity = 114/300 (38.00%), Postives = 171/300 (57.00%), Query Frame = 0
Query: 77 SPTGGPFGSTYTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPS--LMDWAIPLSTQELSKVA------FEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
S P YT+ +NT++RN +LK+ + H+A C AI V+WS+ DPPS L D+ + Q+ S+ A F++ D+LNNRF+ + + T A+ S+DDD+++PC TLDFA+++WQ AP ++VGF PR+ W E + VV YRY + VWW G Y+++L+K F H+ +L LY + + Y+ RNCEDIAM +VAN T GAPP+WV+ + + G SGIS +DH+ +R C+ V +G++ L +T+ KA+DAR W W
Sbjct: 83 SSVSSPSRGGYTVLINTWKRNTLLKQSVAHYASCQGTDAIHVVWSE--VDPPSYKLRDYLKKM-VQKKSQTAHKPNLRFDLNEEDNLNNRFKPIQDLRTDAIFSVDDDVIVPCRTLDFAFTVWQTAPLTMVGFVPRM-HWLDEEKNDVV----------------------HYRY-GGWWSVWWMGTYSMVLSKAAFFHKKYLELYTKKMPSSIHDYVSRERNCEDIAMSLLVANAT-GAPPIWVKGKIYEIGS-SGISSLKDHSDKRNKCLNDFVSLYGAMPLASTNAKAVDARYEWFW 353
BLAST of EWM30464.1 vs. NCBI_GenBank
Match: gi|923714646|ref|XP_013663478.1| (PREDICTED: glycosyltransferase family 64 protein C4-like isoform X1 [Brassica napus] >gi|923714654|ref|XP_013663481.1| PREDICTED: glycosyltransferase family 64 protein C4-like isoform X1 [Brassica napus] >gi|923878744|ref|XP_013711997.1| PREDICTED: glycosyltransferase family 64 protein C4-like isoform X1 [Brassica napus]) HSP 1 Score: 213.001 bits (541), Expect = 8.110e-63 Identity = 107/287 (37.28%), Postives = 171/287 (59.58%), Query Frame = 0
Query: 87 YTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDW---AIPLSTQELSKV--AFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368
YT+ +NT++R D+LK+ + H+A C + +I ++WS+ SL ++ AI ++ +V F+V DSLNNRF+ + + T AV S+DDD++ PC T+DFA+++W++AP+++VGF PR V W +++ L++G+ Y S + VWW G Y+++L+K F H+ +LSLY + + + ++ RNCEDIAM F++AN T APP+WV+ + + G +GIS H +R CV R V EFG + L TS+KA+D+R W W
Sbjct: 70 YTLLMNTWKRYDLLKKSVSHYASCSRLDSIHIVWSEPKPPSESLKEYLQKAIKKKARDGHEVELVFDVNKEDSLNNRFKEIRDLKTDAVFSIDDDIIFPCHTVDFAFNVWESAPETMVGFVPR-VHWPEQSS-----------LQSGK---------AEYYTYSGWWSVWWSGTYSMVLSKAAFFHKKYLSLYTNDMPASIREFTTKNRNCEDIAMSFLIANAT-NAPPIWVKGKIYEIGS-TGISSIGGHTEKRTHCVNRFVAEFGRMPLVYTSMKAVDSRSLWFW 333 The following BLAST results are available for this feature:
BLAST of EWM30464.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|