rna20, rna20 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna20
Unique Name	rna20
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1792
Alignment location	CM002455.1:62923..66804 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100242g3.5819.mrna
Orig protein id	gnl\|cribi\|Naga_100242g3.5819
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:62923..66804 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100242g3	gene19	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna20	rna20-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30651.1	cds20	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:62923..66804+
coding sequence from alignment at CM002455.1:62923..66804+

mRNA sequence

>rna20 ID=rna20|Name=rna20|organism=Nannochloropsis gaditana|type=mRNA|length=1792bp
CAGGTTCTTACCAGACTGACCGTCAGCCCCGCAAGAGTCTCGTTGGCTTC
GAATTTGTACCATGCCGCCTACAAACCCTGATTCGCTGGTCATCACGTCC
GTTGGAGATGCAACCCCGCCTTTGCCTTTGGCGTACGGGAAATTGACTCT
AGAGTGCACCAACGAAGCGTTTCCTGCGGAACTGCAGGGCGTGCCAAAGG
AAATCTTGCTGGCTTTAAGCAAGCATACAGTCGGTCGAGTACCGATCTCA
GGAGGAGAGGGGGTAGAGGGGCTCTGGAAAGGTTCCGCGCCAATCAAGAT
TCCCAGGCACTACGTCCTGAACAAGGCCTACATCTCCTCCATGCACTGCC
GCTTCGAGGTGCTGGAAGACGCGGAGGGAGCGGAGGAGAAGGAGAATTCG
CGGGCCTCCGGGCGGTGGGAACCAGGGGAGCATGCGCGCAGCCTCTCCCT
TCGCCTGACCGACACCTCCACCAACGGCACGTACGTGAACGGGACCCCGG
TGGGGAAGGGGAAGAGTGTTCTTCTCATGGACGGCGACCTCGTCACGCTG
TATCGGCCGCGGGACACCCATAAGCCGGCACTCTCTTATCTTTATAGAGT
GAAGAAGGAGGGATACACAGACATGGCGTATAGGGCCCGGAGGCACGATG
TGGCAGAGCTGGGCGGGTCTCTGGCCGCTGAGCGTCGGGAGCGGGAACGG
ATGAATACAGCGCTCGAGAAAGAAAGCGGCCGGGCAAAGAGCTTGGAGGG
AAAGCTGAACGACCTGAAAAAGTCATGCATGGCGCTGGAAGAAGAGGCGC
ATCGGGTCAGCCTGGACCTTCGGCAGGCGCGGGAAGAAAAAGAGGAAGCC
CAACGGCTTGTGGATGAGAACAACAACGCCCTCGCAGGTCACGAGGCCGT
CAAAGGGGAGGTGATGGAGCTGAGGACAATCGTAGAAAACCAGAGAGAGG
AGATAGAACGCAAGCGTAAGGAGCTCGATCGCCTGCAAGGGCATGCGGTC
AAGCACGAGCGCCTCCTTGAAGAAAAGCTCGCGGCACAGCAACTCGCGAA
GGAGACAAAGGAGGAGTTGGAGGCCAAGATCAAGGACCTGGACTCCCTCA
CCTCCCGCGTCTCCGCCCTTCAAGCCGCTGTAGATGCCTCTATGGAGGAG
GTGGGCCTACTGCAATCATCCCATGCATCGCTTCAAGGGAAAGAAGCTCA
GCTGCTCGCAGATCTCGCAGCAGCGGACAAGAGAAAGGGGGGGGTAGAAG
AGGAAGCGCGTGTTCTGCGAGACCGAGTCTCGCAGCTGGAGACGGGGCAA
CGGGCAGCGCTCGAATCTTTCAAAGAGTGGCAAGTCGCCTCTGCCACCCT
CCTTTCTTCTGTGGAATTGCACCTACAGGTACCACTTCAATGCTTTCGCC
CGTCTCCCTCCAGCCCAATTACCCAAGTACAACAACACCCACAAGCGCCG
ACCCAGCTCTCAGCGGCGGGTTCCCCATGCGAGGCGGAAGGGGAAGCAGG
GGAAGGCGGAAGGGAGAGGGAGGGGGTACAGAAGCGAAGGAGGGGGGGGA
GGGGATTGGATCTGATAAACGAAGAGGGTGAGATGGAGGGGGAGGAGGAA
GAAAGTGCTGTCATAATGGAAGATGGACGTGAAGGAAATAATGTGGAGGA
AGCGAGGAGGAATAGCGCAGGAACATTCGCGGTAGAGTGTGAATCAAAGA
GGCAAAAAGTGTATGAGGGAAGGCGTGCCTTCGATCCTGAGTCGGACGGC
GAAGAAAATGAGGAGACGCTGCAGGGCAAAGAAAAGAAGTAG

protein sequence of rna20

>rna20-protein ID=rna20-protein|Name=rna20|organism=Nannochloropsis gaditana|type=polypeptide|length=256bp
MVNRPLKRGVRDASCALAALSSAAAIHKHHHSKRSPVHTPRALTPSSSSS
ASGEGKGFAPSSQPARPSPRQQEGGHAKKEGRFTSGSTPGTILPTSQPPP
PSPTHPSDNQASSLPTRLPLLPALTREGSSDSVRSDSGPRLPPTLALQNS
SSAYPFPPSLLPSLSKASGAADEWRRRLTIEERMEVRGRLKTAYLHHVQE
GDVEGLLEVGRREGGGGRRVSRGRAGSRERGGGREGMEGNADHVMRGLAP
SVSPSL

mRNA from alignment at CM002455.1:62923..66804+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna20 ID=rna20|Name=rna20|organism=Nannochloropsis gaditana|type=mRNA|length=3882bp|location=Sequence derived from alignment at CM002455.1:62923..66804+ (Nannochloropsis gaditana)
TGAGGCCGCCCTAAACAGACCTGGCGCACCATTTtcaggacgacgaggaa
tCCCACCGGTAAAAACATGTCAGGCGGTTGAACGTGGCGAACATCATGTA
TGGTGCATGAGTTCATCGGTGCCACTTTGTCTAAGCACCGCGAATTATTT
CACACGGATGGCTGGAAAGGCATGCAAGCTCAGGAAAGTTCTCAAGACTC
GTGAAGAGGTTGGGTTGCTTGTCCGTCTTTCACCCATCCATGCAAGTTGG
AAGGTGACTATCGCACAGAGTGTGGTCCAATTGGCTTTTCGTGGTGAATA
GCCAGCACAATTGTGTTCTCATTCGGCTGCCGGCTGCGTGTATACTTCAC
CTtgtacctcccctccttttgcttACATCGAGCTGATATGTCCTCAGAGA
CAGGAGGGCACACGATGCCGGTCTGATGCCCATTCAGGTATGAGAGTGCG
CCGATTTGGACGTCGCAGGGCGCAGGGCGAAAGAAAATGCAGCAGTCTTG
ATGCTCTGGCTCTGGCGTTCTCAGACCTAGAAATGTCGCAGTCTTGGCAT
GGCCAGTAGCGGCCATTTTCCTCTCTGTCCTGAAGACTTTTATTTCTCGG
TATCATACAGTTTATTCCCACCATGGCACAGGTACCGGAGAGATCGAATT
CATTGTAGAAAGCTGTCTCACACAAAATCATTGCGGACCCCTTTGTTGTC
GGAAGGCCGGTTTTTCAAGCTTCAAGGGGGCACAATAAGGGATAGAGCCA
TGGTGAATCGACCTTTGAAACGGGGCGTGCGGGTGCGTGAGGACAaggca
agaaggaaaaaggggtcaaaaagagggggaagggtgccgagagggggcag
gatgGAATGGAAGGGTTGTTGTCGTTGGGAGGAATGTTGTGCCACAGTAT
TAAAGTGTGTCTTCTCACATAGCTTGCGCTGCAGACACAGGATGCTTCCT
GTGCCCTGGCAGCCCtctccagcgccgccgcGATCCACAAGCATCATCAC
AGCAAGGTACGCGTGGAGGGACGGGTAAAGGGCAGAAAAAGCGTCCAACG
CGTGGTTGATACGACAGCTTGGACGCGTGACTTTGTGCGAGTGAAAACGT
GAGGCACGGCCCCCACTGTCCGCACAAGGCGTCGAATCCATCCATGCTTG
CGTTGGCTGGAGCACCACCGTGACGTCTCACAGAATCCTGTTCACTCCCC
TCAACCCCAGCGGTCGCCGGTCCACACGCCCCGGGCcttgaccccttcct
cctcctcttcggcatccggggaagggaaaggatttgctccctcttcccag
ccCGCGAGGCCCTCGCCTCgacagcaagaaggagggcatgcgaagaagga
agggaggtttaCGAGCGGGAGCACGCCTGGGTGAGGCTGGGCCGCCGGAG
TGGACTTCCACGGTtctatttttttttaatAGCCTTCCAGTTCCCTTGGA
GACGcatgttttttttggggtccgaagagggagggaaggggattTCCAga
tcccctccttgacgtTCCCTCACACATgcccttcattccctccaGGACGA
TTCTTCCCACCTCtcagccgcctcctccgtccccgacACACCCTAGCGAC
AACCAAGGTCCTAAactctcctctgcccctgtCGTcgttctttcctcctt
ttctttcgtttctttcatttccctccctgtggtTCCGAGCTTTTCGGCCC
ACGTCATGCGCGGCCgctatcctcctccccttgctgaccctccccttctc
ctccggaGACTCCCTTACCGCCCGAGTCCTGTCGGCTCATTATCCACCGC
CTTTCGCATGCGTTGACCGCTTtcacttccctcttcccttctctctccag
cctcctctctccccacccggctgcccctcctcccggcgtTGACGCGGGAG
GGGTCGTCCGACAGCGTTAGGAGCGACAGTGGACCTCGGTGAGGCAATTG
TGTGGGAGGAACTAGTTTATGCCATATATAAACGGGCGCCTCACCCTGAC
TCCAATACTCATGTCAATCCCTGATCCTCGTTTGcggctttttccccttc
ccatcctgCAGCTTGCCCCCAACTCTCGCCCTGCAAAACAGCAGTAGCGC
CtacccctttcctccctccctccttccctccctctccaaggCGTCAGGGG
CGGCGGACGAATGGCGCCGGCGCCTGACGATTGAGGAGCGGATGGAGGTC
AGGGGGCGTTTGAAGACGGCGTACTTGCATCACgttcaagaaggagatgt
AGAGGGCCTGCTCGAGgtaggaagaagagaaggcggaggggggaggaggg
ttagtagggggagggcgggaagcagggagagggggggaggaagggaagga
atggaggggaatGCGGACCATGTCATGCGTGGTCTGGCTCCCTCagtgtc
tccctccctgtgaatcttttccctttctgtTGCCTGCTCATCGGTAAGCT
TCCATAATCTTGCTCAACAGCTGGTCTCGGCCATGGAAGAAGATTTCTTG
CACCAAggcgccccctcccgtcttgaCTATTTGAAAACGTCCTTGCAggt
tgagagggagggaggaccgaggagtgggagggaggaagggagggaggaag
ggaaggggggaggggtgcaggggggggcggggaaagttGAGGTGGTAATT
GGCTAGAAGTGAGAAAGAGAGTATGGCTCTTTGTCTCTTTGGAAAACTAT
GAGAACCGTGTCATGTCAAATAAGCGCCTTCTCGATCCctcattttcccc
tcttgtctcttccacctccacccttTTCTCTGCCGGCAGTACGACAAGAA
GCTGAACGAGAAAATCCGTCAGCTCCGAGGCGAGGTGGAGATACTCTCGT
CGGGATCCGCCTCAtcatcgcccccgccctcggtccctccctcttcgctc
CTGGAAGAACATGAAAATGGAGGGCATgcgggagggcagggagggggggg
gagagggcggggggaggagaaagatggagacgggcaaaggcgaggggaag
cggagggacTGGCAGTTAACACGGTGTTAAGGAGAGGAGCGTGGGCAGGC
gggaaagacaaggaggaggaaggaggggaggatgagggaggaggggaagg
gagtggtggaAAGACCGATAAGAAGAGGTTGAGAAAATGaagcagagaga
gaggaagggggaaagggagggggggaaagggaggataaTCGCGACGGACT
GGATTGTAAACATGAGCGGAGTTGagcgagaagaagcagaaggAAGATCG
AGGGTGGTCGAAGGAAGACACCGGATGAGGAAATGTACAGGGAGTGGCGC
ACGTTGGAAAAGATGAACGACAGGTAGAGTCTGGGGGGGAGAtcgacgag
gcagggagcacgaaggtgaggagggcgaggagtgAGACAAGAGAGGAATG
AAACGTGAAAGGCGTGtaggggtgaggagggatggagaggacggaggagg
gagaaggtggcaAAGACTATCTGGtggaggcgtgggagagagagaagcgg
AGGGCAGTGaacaaggacggagggaaaagaaggaaataTGCAGCTACTtc
tggaaaaaggaagggaaaggggaaagggtcAAGGGGCGGTGCGAGGAAAG
AGCTTGCTGCCGAGAGGATCGAGTTCTAGACTGAGACGAGGGAGTTTGAT
TCAGGATGTGTGAATCGAGGCGGAAGTTAATCGGAGCCAAGGCTGTCCTG
AAGTCGTGTTAAAAATGCGAGAAGCAACAAAAGGAAGGTAGCGCCAGGCA
TCCGACAAGGGAGGCCTCAAGTAATGTCGATCATTTTCCCTTTTCACACT
GGAGCTCGGATTCGaccctctgtcccttccaaCAAATCGAGCCTCAGTGC
CTTTCAGGTGTAGGGATCTTGCTCTGTAACCC

Coding sequence (CDS) from alignment at CM002455.1:62923..66804+

>rna20 ID=rna20|Name=rna20|organism=Nannochloropsis gaditana|type=CDS|length=4626bp|location=Sequence derived from alignment at CM002455.1:62923..66804+ (Nannochloropsis gaditana)
ATGGTGAATCGACCTTTGAAACGGGGCGTGCGGGATGCTTCCTGTGCCCT
GGCAGCCCtctccagcgccgccgcGATCCACAAGCATCATCACAGCAAGC
GGTCGCCGGTCCACACGCCCCGGGCcttgaccccttcctcctcctcttcg
gcatccggggaagggaaaggatttgctccctcttcccagccCGCGAGGCC
CTCGCCTCgacagcaagaaggagggcatgcgaagaaggaagggaggttta
CGAGCGGGAGCACGCCTGGGACGATTCTTCCCACCTCtcagccgcctcct
ccgtccccgacACACCCTAGCGACAACCAAGcctcctctctccccacccg
gctgcccctcctcccggcgtTGACGCGGGAGGGGTCGTCCGACAGCGTTA
GGAGCGACAGTGGACCTCGCTTGCCCCCAACTCTCGCCCTGCAAAACAGC
AGTAGCGCCtacccctttcctccctccctccttccctccctctccaaggC
GTCAGGGGCGGCGGACGAATGGCGCCGGCGCCTGACGATTGAGGAGCGGA
TGGAGGTCAGGGGGCGTTTGAAGACGGCGTACTTGCATCACgttcaagaa
ggagatgtAGAGGGCCTGCTCGAGgtaggaagaagagaaggcggaggggg
gaggagggttagtagggggagggcgggaagcagggagagggggggaggaa
gggaaggaatggaggggaatGCGGACCATGTCATGCGTGGTCTGGCTCCC
TCagtgtctccctccctgtgaATGGTGAATCGACCTTTGAAACGGGGCGT
GCGGGATGCTTCCTGTGCCCTGGCAGCCCtctccagcgccgccgcGATCC
ACAAGCATCATCACAGCAAGCGGTCGCCGGTCCACACGCCCCGGGCcttg
accccttcctcctcctcttcggcatccggggaagggaaaggatttgctcc
ctcttcccagccCGCGAGGCCCTCGCCTCgacagcaagaaggagggcatg
cgaagaaggaagggaggtttaCGAGCGGGAGCACGCCTGGGACGATTCTT
CCCACCTCtcagccgcctcctccgtccccgacACACCCTAGCGACAACCA
AGcctcctctctccccacccggctgcccctcctcccggcgtTGACGCGGG
AGGGGTCGTCCGACAGCGTTAGGAGCGACAGTGGACCTCGCTTGCCCCCA
ACTCTCGCCCTGCAAAACAGCAGTAGCGCCtacccctttcctccctccct
ccttccctccctctccaaggCGTCAGGGGCGGCGGACGAATGGCGCCGGC
GCCTGACGATTGAGGAGCGGATGGAGGTCAGGGGGCGTTTGAAGACGGCG
TACTTGCATCACgttcaagaaggagatgtAGAGGGCCTGCTCGAGgtagg
aagaagagaaggcggaggggggaggagggttagtagggggagggcgggaa
gcagggagagggggggaggaagggaaggaatggaggggaatGCGGACCAT
GTCATGCGTGGTCTGGCTCCCTCagtgtctccctccctgtgaATGGTGAA
TCGACCTTTGAAACGGGGCGTGCGGGATGCTTCCTGTGCCCTGGCAGCCC
tctccagcgccgccgcGATCCACAAGCATCATCACAGCAAGCGGTCGCCG
GTCCACACGCCCCGGGCcttgaccccttcctcctcctcttcggcatccgg
ggaagggaaaggatttgctccctcttcccagccCGCGAGGCCCTCGCCTC
gacagcaagaaggagggcatgcgaagaaggaagggaggtttaCGAGCGGG
AGCACGCCTGGGACGATTCTTCCCACCTCtcagccgcctcctccgtcccc
gacACACCCTAGCGACAACCAAGcctcctctctccccacccggctgcccc
tcctcccggcgtTGACGCGGGAGGGGTCGTCCGACAGCGTTAGGAGCGAC
AGTGGACCTCGCTTGCCCCCAACTCTCGCCCTGCAAAACAGCAGTAGCGC
CtacccctttcctccctccctccttccctccctctccaaggCGTCAGGGG
CGGCGGACGAATGGCGCCGGCGCCTGACGATTGAGGAGCGGATGGAGGTC
AGGGGGCGTTTGAAGACGGCGTACTTGCATCACgttcaagaaggagatgt
AGAGGGCCTGCTCGAGgtaggaagaagagaaggcggaggggggaggaggg
ttagtagggggagggcgggaagcagggagagggggggaggaagggaagga
atggaggggaatGCGGACCATGTCATGCGTGGTCTGGCTCCCTCagtgtc
tccctccctgtgaATGGTGAATCGACCTTTGAAACGGGGCGTGCGGGATG
CTTCCTGTGCCCTGGCAGCCCtctccagcgccgccgcGATCCACAAGCAT
CATCACAGCAAGCGGTCGCCGGTCCACACGCCCCGGGCcttgaccccttc
ctcctcctcttcggcatccggggaagggaaaggatttgctccctcttccc
agccCGCGAGGCCCTCGCCTCgacagcaagaaggagggcatgcgaagaag
gaagggaggtttaCGAGCGGGAGCACGCCTGGGACGATTCTTCCCACCTC
tcagccgcctcctccgtccccgacACACCCTAGCGACAACCAAGcctcct
ctctccccacccggctgcccctcctcccggcgtTGACGCGGGAGGGGTCG
TCCGACAGCGTTAGGAGCGACAGTGGACCTCGCTTGCCCCCAACTCTCGC
CCTGCAAAACAGCAGTAGCGCCtacccctttcctccctccctccttccct
ccctctccaaggCGTCAGGGGCGGCGGACGAATGGCGCCGGCGCCTGACG
ATTGAGGAGCGGATGGAGGTCAGGGGGCGTTTGAAGACGGCGTACTTGCA
TCACgttcaagaaggagatgtAGAGGGCCTGCTCGAGgtaggaagaagag
aaggcggaggggggaggagggttagtagggggagggcgggaagcagggag
agggggggaggaagggaaggaatggaggggaatGCGGACCATGTCATGCG
TGGTCTGGCTCCCTCagtgtctccctccctgtgaATGGTGAATCGACCTT
TGAAACGGGGCGTGCGGGATGCTTCCTGTGCCCTGGCAGCCCtctccagc
gccgccgcGATCCACAAGCATCATCACAGCAAGCGGTCGCCGGTCCACAC
GCCCCGGGCcttgaccccttcctcctcctcttcggcatccggggaaggga
aaggatttgctccctcttcccagccCGCGAGGCCCTCGCCTCgacagcaa
gaaggagggcatgcgaagaaggaagggaggtttaCGAGCGGGAGCACGCC
TGGGACGATTCTTCCCACCTCtcagccgcctcctccgtccccgacACACC
CTAGCGACAACCAAGcctcctctctccccacccggctgcccctcctcccg
gcgtTGACGCGGGAGGGGTCGTCCGACAGCGTTAGGAGCGACAGTGGACC
TCGCTTGCCCCCAACTCTCGCCCTGCAAAACAGCAGTAGCGCCtacccct
ttcctccctccctccttccctccctctccaaggCGTCAGGGGCGGCGGAC
GAATGGCGCCGGCGCCTGACGATTGAGGAGCGGATGGAGGTCAGGGGGCG
TTTGAAGACGGCGTACTTGCATCACgttcaagaaggagatgtAGAGGGCC
TGCTCGAGgtaggaagaagagaaggcggaggggggaggagggttagtagg
gggagggcgggaagcagggagagggggggaggaagggaaggaatggaggg
gaatGCGGACCATGTCATGCGTGGTCTGGCTCCCTCagtgtctccctccc
tgtgaATGGTGAATCGACCTTTGAAACGGGGCGTGCGGGATGCTTCCTGT
GCCCTGGCAGCCCtctccagcgccgccgcGATCCACAAGCATCATCACAG
CAAGCGGTCGCCGGTCCACACGCCCCGGGCcttgaccccttcctcctcct
cttcggcatccggggaagggaaaggatttgctccctcttcccagccCGCG
AGGCCCTCGCCTCgacagcaagaaggagggcatgcgaagaaggaagggag
gtttaCGAGCGGGAGCACGCCTGGGACGATTCTTCCCACCTCtcagccgc
ctcctccgtccccgacACACCCTAGCGACAACCAAGcctcctctctcccc
acccggctgcccctcctcccggcgtTGACGCGGGAGGGGTCGTCCGACAG
CGTTAGGAGCGACAGTGGACCTCGCTTGCCCCCAACTCTCGCCCTGCAAA
ACAGCAGTAGCGCCtacccctttcctccctccctccttccctccctctcc
aaggCGTCAGGGGCGGCGGACGAATGGCGCCGGCGCCTGACGATTGAGGA
GCGGATGGAGGTCAGGGGGCGTTTGAAGACGGCGTACTTGCATCACgttc
aagaaggagatgtAGAGGGCCTGCTCGAGgtaggaagaagagaaggcgga
ggggggaggagggttagtagggggagggcgggaagcagggagaggggggg
aggaagggaaggaatggaggggaatGCGGACCATGTCATGCGTGGTCTGG
CTCCCTCagtgtctccctccctgtga

Synonyms

Publications