rna1990, rna1990 (mRNA) Nannochloropsis gaditana

Overview
Namerna1990
Unique Namerna1990
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length291
Alignment locationCM002458.1:636379..636909 -

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Properties
Property NameValue
Productmapeg family protein
Orig transcript idgnl|cribi|Naga_100002g28.4795.mrna
Orig protein idgnl|cribi|Naga_100002g28.4795
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:636379..636909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g28gene1901Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28676.1cds1985Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1990rna1990-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1990 ID=rna1990|Name=rna1990|organism=Nannochloropsis gaditana|type=mRNA|length=291bp
ATGCATCTACATACTGAGCGACTACGTCGGTGGCAAGAGCAGCTGTGTGT
CGTACAGCTCTCAGGCTGTTCCTTGACATTCAGGTTGGGGAACGTAAAAA
AAGGTGTTGGGTTAGCTAACATCTCAACGATAGATTTTCGCGCTTTGTGC
TGGCATTTAAATTCTCCTTTGTCGATCCATGTCACCGCTCCAGGCCGCCG
GTTTGTCCTTCATCCCCAAGCGTGTGCCCAGTGGAATAAAGTGGTGCTGG
TACTCCTCTCTGTCTCTGTCGATGTCAGGAAGCTTGCTTGA
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protein sequence of rna1990

>rna1990-protein ID=rna1990-protein|Name=rna1990|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MSTFTISPEYGYVLIAAALLVLEGVYLGSAVMGLRRAYFNDEWQKKNNDL
MDEHKKAFPTVPFSLGYPDMGSGRYAGRLDYEQWFRFNNVQRGHHNFLEQ
VWGVMSLLLVGGLFQPKTFAVLATIYIVSRALYAKGYSSQGPKGREAGAI
LGILSLLGMVGCVIKVGVALIKSGSK
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mRNA from alignment at CM002458.1:636379..636909-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1990 ID=rna1990|Name=rna1990|organism=Nannochloropsis gaditana|type=mRNA|length=531bp|location=Sequence derived from alignment at CM002458.1:636379..636909- (Nannochloropsis gaditana)
ATGTCAACTTTTACAATCTCGCCAGAATATGGATACGTCCTCATTGCTGC
TGCCCTCTTAGTCTTAGAGGGGGTTTATTTGGGAAGTGCAGTGATGGGCC
TGCGGAGGGCGTACTTCAACGACGAATGGCAAAAGAAGAACAATGATTTG
ATGGACGAGCACAAAAAAGCTTTTCCTACAGTACCTTTCTCTCTAGGGTA
CCCTGATATGGGCTCTGGTCGTTACGCCGGACGTTTGGACTACGAGCAAT
GGTTTCGTTTCAACAACGTGCAGCGGGGGCATCACAATTTTCTGGAGCAA
GTCTGGGGAGTCATGTCTTTGCTCTTGGTGGGTGGCCTGTTCCAACCTAA
AACCTTTGCTGTGCTGGCGACTATTTACATTGTTTCCCGAGCTCTGTACG
CCAAGGGTTACTCGTCTCAGGGGCCCAAAGGGAGGGAGGCCGGCGCAATC
TTAGGCATCCTTTCCTTGTTGGGTATGGTGGGGTGTGTCATCAAAGTCGG
CGTGGCCTTGATTAAGAGCGGGAGTAAGTAG
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Coding sequence (CDS) from alignment at CM002458.1:636379..636909-

>rna1990 ID=rna1990|Name=rna1990|organism=Nannochloropsis gaditana|type=CDS|length=531bp|location=Sequence derived from alignment at CM002458.1:636379..636909- (Nannochloropsis gaditana)
ATGTCAACTTTTACAATCTCGCCAGAATATGGATACGTCCTCATTGCTGC
TGCCCTCTTAGTCTTAGAGGGGGTTTATTTGGGAAGTGCAGTGATGGGCC
TGCGGAGGGCGTACTTCAACGACGAATGGCAAAAGAAGAACAATGATTTG
ATGGACGAGCACAAAAAAGCTTTTCCTACAGTACCTTTCTCTCTAGGGTA
CCCTGATATGGGCTCTGGTCGTTACGCCGGACGTTTGGACTACGAGCAAT
GGTTTCGTTTCAACAACGTGCAGCGGGGGCATCACAATTTTCTGGAGCAA
GTCTGGGGAGTCATGTCTTTGCTCTTGGTGGGTGGCCTGTTCCAACCTAA
AACCTTTGCTGTGCTGGCGACTATTTACATTGTTTCCCGAGCTCTGTACG
CCAAGGGTTACTCGTCTCAGGGGCCCAAAGGGAGGGAGGCCGGCGCAATC
TTAGGCATCCTTTCCTTGTTGGGTATGGTGGGGTGTGTCATCAAAGTCGG
CGTGGCCTTGATTAAGAGCGGGAGTAAGTAG
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Synonyms
Publications