rna1987, rna1987 (mRNA) Nannochloropsis gaditana

Overview
Namerna1987
Unique Namerna1987
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1068
Alignment locationCM002458.1:627102..629028 -

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Properties
Property NameValue
Producttwinfilin-like protein
Orig transcript idgnl|cribi|Naga_100002g31.4877.mrna
Orig protein idgnl|cribi|Naga_100002g31.4877
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:627102..629028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g31gene1898Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1987rna1987-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28758.1cds1982Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1987 ID=rna1987|Name=rna1987|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp
ATGGGCAACCTGTGTGGATCCATCTCCGCTGACGATATCGAGGCCGCAAA
AATAAGTAAAGATGTCGATCAGGCCAACGCAGCAGCTTTTAAGAAAGAGC
AAGAGAAAATAAAGCTCCTCCTTCTGGGAGCCGGGGAGTCTGGAAAGAGC
ACTATCTTCAAGCAAATGAAACTGCTCTATGGTGCAGGAACTACCCTTGA
GGACAAGAAGATGATGACTCCTGTCGTGTATGCTAATACGATTTGTGCGA
TGAGGATCCTTCTCGAGCAGTGCAAGCAATTTGGCTACGACTCTGAGATT
TTGGATCAAGATGCTATAGACTTGATCAACACGATCCCAGACACGGATAT
CGACTTAAAAATTGGATCAGCCATAAAAACTCTGTGGAAGGATGATGCGA
TCCAAAAGACCTGGGCGCGGCGCTCTGAATTTCAAATCGTCGAATCGGTC
AAGTATTACTTCAATAAAATTGATGAAATCTCAGAACCTGACTATCTGGC
TTCCGATGATGACATTTTATACGCACGCGTACGGACATCAGGAATCGTAA
CGGAGCGATACATGATTGACGGTACCATGTTTGAGATGTATGATGTCGGA
GGACAGCGAAACGAGAGGAAAAAATGGATACATTGTTTCGACAATGTCAC
AGCTATCATTTTTGTCGCTGCCCTATCTGAATATGACCAGGTTCTGTTTG
AGGATTCCTCCACAAACAGAATGATCGAGGCTATCCAGCTTTTCAAAGAA
ATTTGCAACAACAAATTCTTTGCCAATTCTTCCATGCTTCTTTTTCTCAA
CAAGAAAGATCTTTTTGCGGAAAAAATTTGGGTCAAGGATATAAAGGGTG
TACCTCAATTTTCAGATTACAAGGGGTGCTTAGGCGACTTTGACGCTGGT
GTGGACTATTTTGTGAATTTGTTTCTCGGTGTCAATGACAGGCCTAATGA
AAAGATTATTTACAATCATGTTACATGTGCAACAGACACGAAAAATGTAG
AGGTAGTCATGAACGCGTGTAAAGACATCATCACACGTGGCAATCTTAAA
GACAGCGGATTTATGTAG
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protein sequence of rna1987

>rna1987-protein ID=rna1987-protein|Name=rna1987|organism=Nannochloropsis gaditana|type=polypeptide|length=368bp
MRAHLSVSDGLLAACQPLHTVTSTRLLHIKIEAECLVLAEPPIKKIGSEE
DDFQHLVVERLMQAPNTAALLLIAMDDHPPVLIKYLPLTCPVREKMLYSS
SVADLRRGLAIHFSLFETHELEDMSFLNLTGTLACWRATERGNAIATAPI
DDGVESPLLSTSLYGELAPTERAVARNVGVRLHGMSHVPFTMRSDVREAL
VRVLETRKPENWMELALKEEKIIVIAVRTVPFERDMERQDDNLQESAVHL
SSLLPLDEPRFLVFTQQDSQHVFVFYCPQTASIKQKFTFSAAKSTLIEAL
GGYNIFDRIVEATDPNVTIQSLMSCSRGCKECVDHSDVLHHPLLTETRPR
GPKRPSARSILSETGFAT
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mRNA from alignment at CM002458.1:627102..629028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1987 ID=rna1987|Name=rna1987|organism=Nannochloropsis gaditana|type=mRNA|length=1927bp|location=Sequence derived from alignment at CM002458.1:627102..629028- (Nannochloropsis gaditana)
GGACAATCAATCCCACGAGACAGGTTGCGTGGTTGCTGGAACAGGGGGGG
GCATCGCTTACTCGGCTTGCTCTCTATTTTCCTAGCTTTCCGAACTGCAA
TTGGATGGTATGATCACACTGTTCTCCTCTTAAAGGCCCGCGATCAGGAT
GCGTGCGCACCTGAGCGTCTCGGATGGCCTACTCGCTGCCTGTCAGCCGC
TCCACACCGTCACATCAACCAGGCTTCTCCACATCAAGATCGAAGCCGAG
TGCTTGGTCCTCGCAGAGCCCCCCATTAAAAAAATAGGTAGCGAGGAGGA
TGATTTTCAACATTTGGTAGTGGAGAGATTGATGCAGGCGCCAAACACTG
CCGCTCTCCTGCTCATCGCGATGGACGATCATCCCCCAGTACTGATCAAG
TATTTGCCCTTGACATGCCCTGTTCGGGAAAAGATGCTATACTCCTCTTC
CGTCGCTGATCTCAGGCGTGGTTTGGCCATCCACTTCTCATTATTTGAGA
CGCACGAGCTCGAGGATATGTCTTTTCTCAACTTGACTGGAACTCTGGCG
TGTTGGCGTGCAACAGAGCGGGGGAACGCGATCGCTACGGCTCCGATAGA
CGACGGAGTTGAAAGTCCTCTCCTGTCTACATCACTGTATGGGGAGTTGG
CTCCCACGGAACGAGCGGTGGCGCGAAACGTAGGCGTACGGTTGCATGGT
ATGAGTCATGTGCCTTTTACGATGCGCTCAGACGTGCGTGAAGCTCTTGT
TCGAGTACTGGAGACGCGAAAGCCAGAAAATTGGATGGAACTTGCTTTGA
AGGAAGAGAAAATTATCGTGATCGCGGTCCGCACAGTGCCATTCGAAAGG
GATATGGAAAGACAGGATGACAATTTGCAAGAGTCGGCAGTACACTTGTC
GTCTTTACTTCCTCTTGACGAGCCGCGCTTCCTTGTTTTCACGCAACAGG
ATTCGCAGCACGTGTTCGTCTTTTACTGTCCACAGACCGCGTCTATTAAA
CAAAAATTCACCTTTTCAGCCGCGAAGAGTACCCTGATTGAGGCATTGGG
TGGTTATAATATATTCGATCGCATCGTTGAAGCGACTGACCCAAATGTTA
CTATTCAGTCCTTGATGTCATGTTCGCGAGGCTGCAAAGAGTGTGTTGAT
CATTCTGATGTGCTGCATCATCCTTTGCTTACAGAGACCAGGCCACGAGG
CCCCAAAAGACCAAGTGCTCGTAAGTAAGTTGTGCTAGTGACTTTGTAAT
GGTGGAAGACTGTTCTCACAACAAAGACCAAGGAGACTCTCACTTTAATA
TGCGAATGATTCTGTTTCATCGTCCATTCAAGCAGGAAGCATCCTTAGCG
AGACCGGTTTTGCAACCTAACAACTAAGCCTTCAAATACCCCCTTCCAAT
CATTACGTAAAATCCCTTCAAGAAGATCGAAGAAGCATGTGAATAAATTA
ATTGTCCTTTGCACCTATTTGAACCTCTCACAGATTGATTGATTTTTTCT
TTAATTCAAAGTTGAAGATACGTTGTAGGGTTGGGTGGAAAATCGGAGAG
TTTGGGTGGAAGGGGTCATATCGGTAATTTACAATATTAATAAACGGCAT
AAATCTCACAGTCTGTTTGAGAGCAAATAAAAGACGTCCACAACTCTTCA
GTAGGCCGCGAGCAACGTGTTGTCGGGGGATGTGAGCGAAGCCATTACTA
TGTTTTGCACCGGATTCTTCCCTTCATATCTTAGAGGAGGTACAAGATGT
ACTTGAGCTTCACGCACAAAATTAAATGAAATTCAGATGAGATACCATGA
ATCAGGCTTGCAAAATAACGGTGCTATTTGATGTGTATCTTCGCAATAGG
CAGACTCAAGATTCATTGATTACCATCATATGCAAGTGTACGCTTCCTTG
GGACTGGAAATTGGAAGAAACCTGTAA
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Coding sequence (CDS) from alignment at CM002458.1:627102..629028-

>rna1987 ID=rna1987|Name=rna1987|organism=Nannochloropsis gaditana|type=CDS|length=2214bp|location=Sequence derived from alignment at CM002458.1:627102..629028- (Nannochloropsis gaditana)
GAAGCATCCTTAGCGAGACCGGTTTTGCAACCTAAATGCGTGCGCACCTG
AGCGTCTCGGATGGCCTACTCGCTGCCTGTCAGCCGCTCCACACCGTCAC
ATCAACCAGGCTTCTCCACATCAAGATCGAAGCCGAGTGCTTGGTCCTCG
CAGAGCCCCCCATTAAAAAAATAGGTAGCGAGGAGGATGATTTTCAACAT
TTGGTAGTGGAGAGATTGATGCAGGCGCCAAACACTGCCGCTCTCCTGCT
CATCGCGATGGACGATCATCCCCCAGTACTGATCAAGTATTTGCCCTTGA
CATGCCCTGTTCGGGAAAAGATGCTATACTCCTCTTCCGTCGCTGATCTC
AGGCGTGGTTTGGCCATCCACTTCTCATTATTTGAGACGCACGAGCTCGA
GGATATGTCTTTTCTCAACTTGACTGGAACTCTGGCGTGTTGGCGTGCAA
CAGAGCGGGGGAACGCGATCGCTACGGCTCCGATAGACGACGGAGTTGAA
AGTCCTCTCCTGTCTACATCACTGTATGGGGAGTTGGCTCCCACGGAACG
AGCGGTGGCGCGAAACGTAGGCGTACGGTTGCATGGTATGAGTCATGTGC
CTTTTACGATGCGCTCAGACGTGCGTGAAGCTCTTGTTCGAGTACTGGAG
ACGCGAAAGCCAGAAAATTGGATGGAACTTGCTTTGAAGGAAGAGAAAAT
TATCGTGATCGCGGTCCGCACAGTGCCATTCGAAAGGGATATGGAAAGAC
AGGATGACAATTTGCAAGAGTCGGCAGTACACTTGTCGTCTTTACTTCCT
CTTGACGAGCCGCGCTTCCTTGTTTTCACGCAACAGGATTCGCAGCACGT
GTTCGTCTTTTACTGTCCACAGACCGCGTCTATTAAACAAAAATTCACCT
TTTCAGCCGCGAAGAGTACCCTGATTGAGGCATTGGGTGGTTATAATATA
TTCGATCGCATCGTTGAAGCGACTGACCCAAATGTTACTATTCAGTCCTT
GATGTCATGTTCGCGAGGCTGCAAAGAGTGTGTTGATCATTCTGATGTGC
TGCATCATCCTTTGCTTACAGAGACCAGGCCACGAGGCCCCAAAAGACCA
AGTGCTCGAAGCATCCTTAGCGAGACCGGTTTTGCAACCTAAATGCGTGC
GCACCTGAGCGTCTCGGATGGCCTACTCGCTGCCTGTCAGCCGCTCCACA
CCGTCACATCAACCAGGCTTCTCCACATCAAGATCGAAGCCGAGTGCTTG
GTCCTCGCAGAGCCCCCCATTAAAAAAATAGGTAGCGAGGAGGATGATTT
TCAACATTTGGTAGTGGAGAGATTGATGCAGGCGCCAAACACTGCCGCTC
TCCTGCTCATCGCGATGGACGATCATCCCCCAGTACTGATCAAGTATTTG
CCCTTGACATGCCCTGTTCGGGAAAAGATGCTATACTCCTCTTCCGTCGC
TGATCTCAGGCGTGGTTTGGCCATCCACTTCTCATTATTTGAGACGCACG
AGCTCGAGGATATGTCTTTTCTCAACTTGACTGGAACTCTGGCGTGTTGG
CGTGCAACAGAGCGGGGGAACGCGATCGCTACGGCTCCGATAGACGACGG
AGTTGAAAGTCCTCTCCTGTCTACATCACTGTATGGGGAGTTGGCTCCCA
CGGAACGAGCGGTGGCGCGAAACGTAGGCGTACGGTTGCATGGTATGAGT
CATGTGCCTTTTACGATGCGCTCAGACGTGCGTGAAGCTCTTGTTCGAGT
ACTGGAGACGCGAAAGCCAGAAAATTGGATGGAACTTGCTTTGAAGGAAG
AGAAAATTATCGTGATCGCGGTCCGCACAGTGCCATTCGAAAGGGATATG
GAAAGACAGGATGACAATTTGCAAGAGTCGGCAGTACACTTGTCGTCTTT
ACTTCCTCTTGACGAGCCGCGCTTCCTTGTTTTCACGCAACAGGATTCGC
AGCACGTGTTCGTCTTTTACTGTCCACAGACCGCGTCTATTAAACAAAAA
TTCACCTTTTCAGCCGCGAAGAGTACCCTGATTGAGGCATTGGGTGGTTA
TAATATATTCGATCGCATCGTTGAAGCGACTGACCCAAATGTTACTATTC
AGTCCTTGATGTCATGTTCGCGAGGCTGCAAAGAGTGTGTTGATCATTCT
GATGTGCTGCATCATCCTTTGCTTACAGAGACCAGGCCACGAGGCCCCAA
AAGACCAAGTGCTC
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Synonyms
Publications