rna1984, rna1984 (mRNA) Nannochloropsis gaditana

Overview
Namerna1984
Unique Namerna1984
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length789
Alignment locationCM002458.1:622246..623568 -

Link to JBrowse

Properties
Property NameValue
Producttrna (guanine-n -)-methyltransferase
Orig transcript idgnl|cribi|Naga_100002g34.4931.mrna
Orig protein idgnl|cribi|Naga_100002g34.4931
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:622246..623568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g34gene1895Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1984rna1984-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28812.1cds1979Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1984 ID=rna1984|Name=rna1984|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
ATGCAGCATGAAAACATTCTCAAGGATGTGTCAGGGAAAGAAAAGGGGGA
GCAAAGTCAATTTATGGTGGCTATCGAGGTCGAGAAGAAGACAAATGCCG
GAACTCTTGTGAGATGCAGTGTAGCCTTTGGTGCGACCTCTTTGTGCCTA
GTAGGCGTGGGAAGACCGCGCTTTTCAAAGCATGGCTCCTTTGGGAGTCA
CCACTACTTGCCCACAAGGTCATTCACAAGCTGGCAAGCTCTACGACAAT
TTGCTGACAATCGAAAATTCCACGTGATCGGCGTCAGCTCAAGCAGCGCG
TGCCGAACGACCTCGGTAAGCTTGCGGCCCTTTGAAGGCTCTACCATATT
TGTCTCGCCAACCAGAGGTAAGACGCTGACAACGGAACAGCTTCAGGCTT
GCCACTTTCTGGTTCATGTGCGCGTTGCTGGTGGACCCGCAGTTGATGCA
GCATTCAGCACATTGGGCGGAGGATTAACGCTGGACACAGATGTAGCTTT
GTCGATTGTTTTGCATCATTTTACAGCTTGGAGCAGGTACAACACCCACA
GGTTTTGTGGGCAGAAGTACGTGAAGGGACAGGCAAGAAAGGTGGGACAA
TTTGAGGACGAGGAGCAACATCGACTGCGCAACGAGCGGAGACAGCAACG
ACTCAAGGCCGACATATTATCACAGCCGGAAACCGAGTCAACAGAAGTCA
CAAACGCAGAAGAAGTGAATCAGGAGGCGGAGGAGAAAGTCTCAATATGG
TCCGGGTTCTGGGGCAAGGGGGCTTTAGCTGAGAAGTGA
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protein sequence of rna1984

>rna1984-protein ID=rna1984-protein|Name=rna1984|organism=Nannochloropsis gaditana|type=polypeptide|length=337bp
MLQREISKGLRFIRRRVLFLVYICFFTCNLHGMAFLLRAGVKARKEYLWH
DSIPHLSSGGLKSRCLCAGPQREGGKKEYTDIHALQDGNEALCAEDSIEN
GGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAF
ANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEK
YRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKR
RVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASA
SGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCRDNH
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mRNA from alignment at CM002458.1:622246..623568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1984 ID=rna1984|Name=rna1984|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp|location=Sequence derived from alignment at CM002458.1:622246..623568- (Nannochloropsis gaditana)
ATGCTCCAACGCGAAATCTCGAAAGGCTTGCGGTTTATCCGCAGACGGGT
CCTTTTTTTGGTCTATATCTGCTTTTTTACGTGTAATTTACATGGCATGG
CTTTCTTATTGCGGGCTGGTGTCAAAGCACGAAAAGAGTACCTGTGGCAT
GACAGTATACCTCATCTCTCTAGCGGTGGGCTTAAAAGTAGATGCTTGTG
TGCAGGGCCTCAACGGGAAGGCGGCAAGAAGGAATACACCGACATACACG
CATTACAGGACGGTAATGAGGCCTTGTGCGCGGAGGACTCGATTGAAAAT
GGCGGGATGCGGTCAGAGCAAAACAAGACACTGTCATCTCGTGCTGGTGC
AAAGTGAGTGGTGCTCCAGGTCGTCTTCACCGTATTTTGGACATCGCGAT
CGTGTAATATTTGATAATCCCACGAGTTGCTCAGTCCACTTCAAACTCTT
CCCACTAAATCTTTTCCCAGGAAAAAATTGAGGGCCATCCGGCAGCATGT
CAACCCGCTATCCTCGCTCTATCAGAGACCTGCGAATATATCTGCGAAAT
GGGTCGAGGACGCTTTTGCGAACCCCAGTCTCCCGTTTCATATCGACATT
GGCTCGGCTCGAGGCCGATTTTGTATATATATGGCAAGAGAACACCCTGA
CATGAATTTTTTGGGACTGGAAATTCGTCGCCCCTGCGTGGAGGAGTCCT
TCAAGAAAATGGAGAAATACAGGGTCAAGGACAACGTGCACTTTTTAGCG
CTGAACGTCAATGTTGATCTGGAGCGGATTGTAGCGGATGTGCGAAAGCA
CAGCGAGATTGTGCGATGTAAGTAGGCAGCGGAGTTGGTCGTGGAGGAAT
ATCAAGTATGCCCGTCCTTTCATGGACGTCCCACTGTCAGTCTCTCTGGT
GGTGACGCCTTCCTTTAATAGTCACAATACGGAATGACGTCGCATTGCAA
CCAGGATCAGCTGAATTACACATTTCTTCTAATTAGCATGTCCTCCACTG
GCATCCCAGATAGTGTACAATTTCCAGATCCCCACTTCAAGACCAAGCAT
AAAAAGCGACGTGTCATACAACCCGCCCTCGTCGCTTGCATGTGCAGTAG
CCTTAAGTCCGATGGAGGGGAGATCTTCATCCAGTCGGACGTGGAGGAGG
TCGCAGTCTCCATGCGTGATGCTTTCAAAGAGTCCACTCTCGTCGCAGAC
GCGAGCGCGTCCGGCGCGTGGATGGAGGAAAACCCACTCAAGGTGCCGAC
TGAACGGGAGGTGCTGACGCTCTCTAGAGGAGACCCCGTTTACCGGACAG
TTTTTTGCCGGGACAACCATTGA
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Coding sequence (CDS) from alignment at CM002458.1:622246..623568-

>rna1984 ID=rna1984|Name=rna1984|organism=Nannochloropsis gaditana|type=CDS|length=3042bp|location=Sequence derived from alignment at CM002458.1:622246..623568- (Nannochloropsis gaditana)
ATAGTGTACAATTTCCAGATCCCCACTTCAAGACCAAGCATAAAAAGCGA
CGTGTCATACAACCCGCCCTCGTCGCTTGCATGTGCAGTAGCCTTAAGTC
CGATGGAGGGGAGATCTTCATCCAGTCGGACGTGGAGGAGGTCGCAGTCT
CCATGCGTGATGCTTTCAAAGAGTCCACTCTCGTCGCAGACGCGAGCGCG
TCCGGCGCGTGGATGGAGGAAAACCCACTCAAGGTGCCGACTGAACGGGA
GGTGCTGACGCTCTCTAGAGGAGACCCCGTTTACCGGACAGTTTTTTGCC
GGGACAACCATTGAGAAAAAATTGAGGGCCATCCGGCAGCATGTCAACCC
GCTATCCTCGCTCTATCAGAGACCTGCGAATATATCTGCGAAATGGGTCG
AGGACGCTTTTGCGAACCCCAGTCTCCCGTTTCATATCGACATTGGCTCG
GCTCGAGGCCGATTTTGTATATATATGGCAAGAGAACACCCTGACATGAA
TTTTTTGGGACTGGAAATTCGTCGCCCCTGCGTGGAGGAGTCCTTCAAGA
AAATGGAGAAATACAGGGTCAAGGACAACGTGCACTTTTTAGCGCTGAAC
GTCAATGTTGATCTGGAGCGGATTGTAGCGGATGTGCGAAAGCACAGCGA
GATTGTGCGATATGCTCCAACGCGAAATCTCGAAAGGCTTGCGGTTTATC
CGCAGACGGGTCCTTTTTTTGGTCTATATCTGCTTTTTTACGTGTAATTT
ACATGGCATGGCTTTCTTATTGCGGGCTGGTGTCAAAGCACGAAAAGAGT
ACCTGTGGCATGACAGTATACCTCATCTCTCTAGCGGTGGGCTTAAAAGT
AGATGCTTGTGTGCAGGGCCTCAACGGGAAGGCGGCAAGAAGGAATACAC
CGACATACACGCATTACAGGACGGTAATGAGGCCTTGTGCGCGGAGGACT
CGATTGAAAATGGCGGGATGCGGTCAGAGCAAAACAAGACACTGTCATCT
CGTGCTGGTGCAAAATAGTGTACAATTTCCAGATCCCCACTTCAAGACCA
AGCATAAAAAGCGACGTGTCATACAACCCGCCCTCGTCGCTTGCATGTGC
AGTAGCCTTAAGTCCGATGGAGGGGAGATCTTCATCCAGTCGGACGTGGA
GGAGGTCGCAGTCTCCATGCGTGATGCTTTCAAAGAGTCCACTCTCGTCG
CAGACGCGAGCGCGTCCGGCGCGTGGATGGAGGAAAACCCACTCAAGGTG
CCGACTGAACGGGAGGTGCTGACGCTCTCTAGAGGAGACCCCGTTTACCG
GACAGTTTTTTGCCGGGACAACCATTGAGAAAAAATTGAGGGCCATCCGG
CAGCATGTCAACCCGCTATCCTCGCTCTATCAGAGACCTGCGAATATATC
TGCGAAATGGGTCGAGGACGCTTTTGCGAACCCCAGTCTCCCGTTTCATA
TCGACATTGGCTCGGCTCGAGGCCGATTTTGTATATATATGGCAAGAGAA
CACCCTGACATGAATTTTTTGGGACTGGAAATTCGTCGCCCCTGCGTGGA
GGAGTCCTTCAAGAAAATGGAGAAATACAGGGTCAAGGACAACGTGCACT
TTTTAGCGCTGAACGTCAATGTTGATCTGGAGCGGATTGTAGCGGATGTG
CGAAAGCACAGCGAGATTGTGCGATATGCTCCAACGCGAAATCTCGAAAG
GCTTGCGGTTTATCCGCAGACGGGTCCTTTTTTTGGTCTATATCTGCTTT
TTTACGTGTAATTTACATGGCATGGCTTTCTTATTGCGGGCTGGTGTCAA
AGCACGAAAAGAGTACCTGTGGCATGACAGTATACCTCATCTCTCTAGCG
GTGGGCTTAAAAGTAGATGCTTGTGTGCAGGGCCTCAACGGGAAGGCGGC
AAGAAGGAATACACCGACATACACGCATTACAGGACGGTAATGAGGCCTT
GTGCGCGGAGGACTCGATTGAAAATGGCGGGATGCGGTCAGAGCAAAACA
AGACACTGTCATCTCGTGCTGGTGCAAAATAGTGTACAATTTCCAGATCC
CCACTTCAAGACCAAGCATAAAAAGCGACGTGTCATACAACCCGCCCTCG
TCGCTTGCATGTGCAGTAGCCTTAAGTCCGATGGAGGGGAGATCTTCATC
CAGTCGGACGTGGAGGAGGTCGCAGTCTCCATGCGTGATGCTTTCAAAGA
GTCCACTCTCGTCGCAGACGCGAGCGCGTCCGGCGCGTGGATGGAGGAAA
ACCCACTCAAGGTGCCGACTGAACGGGAGGTGCTGACGCTCTCTAGAGGA
GACCCCGTTTACCGGACAGTTTTTTGCCGGGACAACCATTGAGAAAAAAT
TGAGGGCCATCCGGCAGCATGTCAACCCGCTATCCTCGCTCTATCAGAGA
CCTGCGAATATATCTGCGAAATGGGTCGAGGACGCTTTTGCGAACCCCAG
TCTCCCGTTTCATATCGACATTGGCTCGGCTCGAGGCCGATTTTGTATAT
ATATGGCAAGAGAACACCCTGACATGAATTTTTTGGGACTGGAAATTCGT
CGCCCCTGCGTGGAGGAGTCCTTCAAGAAAATGGAGAAATACAGGGTCAA
GGACAACGTGCACTTTTTAGCGCTGAACGTCAATGTTGATCTGGAGCGGA
TTGTAGCGGATGTGCGAAAGCACAGCGAGATTGTGCGATATGCTCCAACG
CGAAATCTCGAAAGGCTTGCGGTTTATCCGCAGACGGGTCCTTTTTTTGG
TCTATATCTGCTTTTTTACGTGTAATTTACATGGCATGGCTTTCTTATTG
CGGGCTGGTGTCAAAGCACGAAAAGAGTACCTGTGGCATGACAGTATACC
TCATCTCTCTAGCGGTGGGCTTAAAAGTAGATGCTTGTGTGCAGGGCCTC
AACGGGAAGGCGGCAAGAAGGAATACACCGACATACACGCATTACAGGAC
GGTAATGAGGCCTTGTGCGCGGAGGACTCGATTGAAAATGGCGGGATGCG
GTCAGAGCAAAACAAGACACTGTCATCTCGTGCTGGTGCAAA
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Synonyms
Publications