EWM28812.1, cds1979 (CDS) Nannochloropsis gaditana

Overview
NameEWM28812.1
Unique Namecds1979
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:623216..623568 -
Alignment locationCM002458.1:622752..623098 -
Alignment locationCM002458.1:622246..622559 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28812.1
Producttrna (guanine-n -)-methyltransferase
Orig transcript idgnl|cribi|Naga_100002g34.4931.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:623216..623568 -
CM002458.1supercontigCM002458.1:622752..623098 -
CM002458.1supercontigCM002458.1:622246..622559 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006400tRNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008176tRNA (guanine-N7-)-methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR003358tRNA_(Gua-N-7)_MeTrfase_Trmb
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|585111235|gb|EWM28812.1| (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0
Query:    1 MLQREISKGLRFIRRRVLFLVYICFFTCNLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLKSRCLCAGPQREGGKKEYTDIHALQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCRDNH 337
            MLQREISKGLRFIRRRVLFLVYICFFTCNLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLKSRCLCAGPQREGGKKEYTDIHALQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCRDNH
Sbjct:    1 MLQREISKGLRFIRRRVLFLVYICFFTCNLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLKSRCLCAGPQREGGKKEYTDIHALQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCRDNH 337          
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1121319767|ref|WP_073629906.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Scytonema sp. HK-05] >gi|1115296241|gb|OKH59236.1| tRNA (guanosine(46)-N7)-methyltransferase TrmB [Scytonema sp. HK-05] >gi|1210126257|dbj|BAY45371.1| tRNA (guanine-N(7))-methyltransferase [Scytonema sp. HK-05])

HSP 1 Score: 186.808 bits (473), Expect = 1.521e-54
Identity = 102/209 (48.80%), Postives = 138/209 (66.03%), Query Frame = 0
Query:  124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVF 332
            +RQHVNPLS  YQ P +   +W E  +A P+ P H+DIG ARGRF + MA+  P+ NFLGLEIR P V E+ K  ++  +  N+H+L  NVN  L  +++ + K + + R ++QFPDP FK +H KRR++QP LV  +  SL   GG +F+QSD+E VAV MRD F E        A G W+ ENPL VPTERE+ T+++G+PVYR VF
Sbjct:    6 VRQHVNPLSQKYQTPLS-PIEW-EKIYAKPNQPLHLDIGCARGRFLLSMAKTEPNWNFLGLEIREPLVIEANKWRDELGL-TNLHYLFCNVNNSLRSLLSSLPKGT-LQRVTIQFPDPWFKNRHAKRRIVQPELVVELAESL-IPGGIVFLQSDIEFVAVEMRDRFAEHPGFQRRGA-GEWLAENPLPVPTEREIGTMNKGEPVYRAVF 208          
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|971071222|ref|WP_058881409.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Oscillatoriales cyanobacterium MTP1])

HSP 1 Score: 186.422 bits (472), Expect = 1.717e-54
Identity = 100/211 (47.39%), Postives = 136/211 (64.45%), Query Frame = 0
Query:  124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
            +RQHVNPL+  YQ+P      W  D FANP LP H+DIG ARGRF + MA   P  NFLGLEIR P V E+  ++   R   N+H++  N N+ L  ++A +   + + R S+QFPDP FK +H+KRRV+QP LV+ +   L + G E+F+QSDV EVAV M D F+E+         G W+ ENP+ VPTERE+ T ++G+PVYR +F +
Sbjct:    6 VRQHVNPLAQKYQQPTQPPV-W-SDVFANPQLPLHLDIGCARGRFVLKMAELQPGWNFLGLEIREPLVIEA-NRIRDERGLTNLHYVFCNANLSLRSLLASLPPQT-LQRVSIQFPDPWFKKRHQKRRVVQPELVSDLAEFLPT-GAEVFLQSDVWEVAVEMGDRFQENLAFV---RQGDWLAENPMPVPTEREIATQNKGEPVYRILFVK 208          
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1210089296|dbj|BAY08432.1| (hypothetical protein NIES2098_15920 [Calothrix sp. NIES-2098])

HSP 1 Score: 186.422 bits (472), Expect = 2.342e-54
Identity = 93/211 (44.08%), Postives = 139/211 (65.88%), Query Frame = 0
Query:  124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
            +RQHVNPL+  YQ P N S  W +  +A P  P H+DIG ARGRF ++MA+  P+ NFLGLEIR P V E+ +    + +  N+H+L  NVN  L  +++ + + + + R ++QFPDP FKT+H KRR++QP LV+ +   + + GG +F+QSD+E +A+ MRD F ++      SA G W+ ENPL V TERE+ T ++ +P+YR +F +
Sbjct:    6 VRQHVNPLAQKYQTPVN-SLDW-DKLYAQPHQPLHLDIGCARGRFLLHMAQIEPNWNFLGLEIREPLVVEANQLCSDWGLT-NLHYLFCNVNRSLNALLSSLPEGT-LQRVTIQFPDPWFKTRHAKRRIVQPELVSDLAKYVAA-GGVVFLQSDIEFLAIEMRDIFAQNPAFQKLSA-GEWLTENPLPVSTEREIATQNKSEPIYRALFIK 210          
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|515888644|ref|WP_017319227.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Mastigocladopsis repens])

HSP 1 Score: 186.422 bits (472), Expect = 2.734e-54
Identity = 100/211 (47.39%), Postives = 136/211 (64.45%), Query Frame = 0
Query:  124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
            +RQHVNPLS  YQ PAN    W E  +A  + P H+DIG+ARGRF + MA+  P  NFLGLEIR P V ++ K  ++  +  N+H+L  NVN  L  +++ + K S + R ++QFPDP FK +H KRR++QP LVA +   L   GG +F+QSD+E VAV M D F E         +G W+ +NPL VPTERE+ T+ +G+PVYR +F R
Sbjct:   12 VRQHVNPLSQKYQTPAN-PINW-EKVYAKTNQPLHLDIGAARGRFLLSMAKIEPSWNFLGLEIREPLVIDANKWRDELGLT-NLHYLFCNVNNSLRSLLSFLPKGS-LKRVTIQFPDPWFKNRHAKRRIVQPELVAELAEFL-VPGGIVFLQSDIEFVAVQMCDRFAEHPAFQRV-GTGEWLAQNPLPVPTEREIGTIKKGEPVYRALFER 216          
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|938305719|gb|KPQ39139.1| (tRNA (guanine-N(7)-)-methyltransferase TrmB [Phormidium sp. OSCR])

HSP 1 Score: 185.652 bits (470), Expect = 3.755e-54
Identity = 101/214 (47.20%), Postives = 138/214 (64.49%), Query Frame = 0
Query:  124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKD---NVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
            +RQHVNPLS  YQ+P  +   W +  + NP  P H+DIG ARGRF   +A + PD NFLGLEIR+  V+E+     ++R +D   N+H+L  N+NV  E ++  + +   + R S+QFPDP FK +H KRRV+QP LV  +   L +D GEIF+QSDVEEVA+ MRD   E    A  + S  W+ +NPL V TERE+ T ++G+PVYR +F R
Sbjct:    6 VRQHVNPLSRKYQQPVPL-PDWTK-IYDNPQQPLHLDIGCARGRFLYELAPQQPDWNFLGLEIRQSLVDEA----NQWRDRDNLTNLHYLYCNINVMSEALLQSLPQGC-LKRVSIQFPDPWFKKRHHKRRVVQPELVEDLARFLAAD-GEIFLQSDVEEVAIEMRDRLSEHP--AFTATSDDWLPDNPLPVATEREIATYNKGEPVYRCIFRR 209          
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1057521824|ref|WP_068818696.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Phormidesmis priestleyi])

HSP 1 Score: 185.267 bits (469), Expect = 5.085e-54
Identity = 98/211 (46.45%), Postives = 138/211 (65.40%), Query Frame = 0
Query:  124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
            +R+HVNPLS  YQ PA  S  W E  +A+ +LP H+DIG  RGRF + MA+  P+ NFLGLEIR P V++S +  ++  ++ N+H+L  NVN  L  ++A + K   + + ++QFPDP FK KH+KRRV+QP +V  +   L S+GG +F+QSD+EEVA+ M D F      A       W+ +NP+ +PTERE  TL RG+PVYR VF +
Sbjct:    6 VREHVNPLSRKYQTPAE-SPDW-EKIYADLTLPLHLDIGCGRGRFLLKMAQLQPEWNFLGLEIREPLVDQSIEFRDQLGLQ-NLHYLFCNVNNSLPALLAPL-KPGTLQQVTIQFPDPWFKRKHQKRRVVQPEVVEELALHL-SNGGRVFVQSDIEEVAIEMVDRFAAHP--AFHRQDCDWLTDNPMPIPTEREASTLERGEPVYRAVFYK 209          
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1060042901|ref|WP_069070967.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Nostoc sp. KVJ20] >gi|1059439219|gb|ODG96761.1| tRNA (guanosine(46)-N7)-methyltransferase TrmB [Nostoc sp. KVJ20])

HSP 1 Score: 185.267 bits (469), Expect = 6.977e-54
Identity = 99/211 (46.92%), Postives = 132/211 (62.56%), Query Frame = 0
Query:  124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
            +RQHVNPL   YQ PAN    W E  +A P+ P H+DIG A+G+F + MA+  P+ NFLGLEIR P V E+  K+       N+H+L  NVN +    +        +   ++QFPDP FKT+H KRRV+QP LVA +   L + GG +F+QSD+E VAV MRD F E+    +   +G W+ ENPL VPTERE+ T  +G+PVYR +F R
Sbjct:    6 VRQHVNPLGKKYQTPAN-PLDW-EKVYAKPNQPLHLDIGCAKGQFLLNMAKIEPNWNFLGLEIREPLVVEA-NKLRSELALTNLHYLFCNVN-NSLHSLLSSLPPGSLQHVTIQFPDPWFKTRHAKRRVVQPELVADLAKYL-AVGGFVFLQSDMEFVAVEMRDRFAENPDF-EKIGTGEWLTENPLPVPTEREIGTQKKGEPVYRALFVR 210          
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1084332127|ref|WP_070396186.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Moorea producens] >gi|1082414215|gb|AOX03820.1| tRNA (guanosine(46)-N7)-methyltransferase TrmB [Moorea producens PAL-8-15-08-1])

HSP 1 Score: 184.882 bits (468), Expect = 8.340e-54
Identity = 98/211 (46.45%), Postives = 131/211 (62.09%), Query Frame = 0
Query:  124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
            +RQHVNPLS  YQ P  +SA      +A  + P H+DIG  RG F + MA E PD NFLGLEIR P V+++  K+    +  N+ FL  N N  ++ +++     S + R ++QFPDP FK +  KRR++QP LV  + + L S GGE+F+QSDVEEVAV MR  F    +        AW+  NPL VPTERE+ TL+RG+PVYR +F R
Sbjct:    6 VRQHVNPLSKQYQMP--VSAPDWNQVYAQTTKPLHLDIGCGRGEFLLQMATEQPDWNFLGLEIREPLVKQANTKVVDLGL-SNLLFLFCNANSSIDSLLSSWPPGS-LQRVTIQFPDPWFKKRQAKRRIVQPTLVDTLGAYLTS-GGEVFVQSDVEEVAVEMRSRFDAHPVFYRPET--AWLPTNPLPVPTEREISTLARGEPVYRMLFFR 209          
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|740243083|ref|WP_038084102.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Tolypothrix bouteillei] >gi|744448027|gb|KIE08865.1| tRNA (guanine-N7)-methyltransferase [Tolypothrix bouteillei VB521301])

HSP 1 Score: 184.111 bits (466), Expect = 1.632e-53
Identity = 96/209 (45.93%), Postives = 134/209 (64.11%), Query Frame = 0
Query:  124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVF 332
            +RQHVNPL+  YQ P N    W E  FA P+LP H+DIG A+GRF + MA+  P  NFLGLEIR P V ++ +  ++  ++ N+H+L  N N  L  +++ +   + + R ++QFPDP FK +H KRRV+QP LVA +   L   GG +F+QSD+E +AV M D F  ++        G W+ ENPL VPTERE  TL++G+PVYR +F
Sbjct:    6 VRQHVNPLAHKYQTPLN-PPNW-EKVFAQPNLPLHLDIGCAKGRFVLNMAQVEPMWNFLGLEIREPLVADANRLRDELGLR-NLHYLFCNANNSLRPLLSSL-PQTRLQRVTIQFPDPWFKNRHAKRRVVQPELVAELAEFLLP-GGIVFLQSDMEFLAVEMCDRFAANSAFVR-HGKGEWLAENPLSVPTERETYTLNKGEPVYRAIF 208          
The following BLAST results are available for this feature:
BLAST of EWM28812.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111235|gb|EWM28812.1|0.000e+0100.00trna (guanine-n -)-methyltransferase [Nannochlorop... [more]
gi|1121319767|ref|WP_073629906.1|1.521e-5448.80tRNA (guanosine(46)-N7)-methyltransferase TrmB [Sc... [more]
gi|971071222|ref|WP_058881409.1|1.717e-5447.39tRNA (guanosine(46)-N7)-methyltransferase TrmB [Os... [more]
gi|1210089296|dbj|BAY08432.1|2.342e-5444.08hypothetical protein NIES2098_15920 [Calothrix sp.... [more]
gi|515888644|ref|WP_017319227.1|2.734e-5447.39tRNA (guanosine(46)-N7)-methyltransferase TrmB [Ma... [more]
gi|938305719|gb|KPQ39139.1|3.755e-5447.20tRNA (guanine-N(7)-)-methyltransferase TrmB [Phorm... [more]
gi|1057521824|ref|WP_068818696.1|5.085e-5446.45tRNA (guanosine(46)-N7)-methyltransferase TrmB [Ph... [more]
gi|1060042901|ref|WP_069070967.1|6.977e-5446.92tRNA (guanosine(46)-N7)-methyltransferase TrmB [No... [more]
gi|1084332127|ref|WP_070396186.1|8.340e-5446.45tRNA (guanosine(46)-N7)-methyltransferase TrmB [Mo... [more]
gi|740243083|ref|WP_038084102.1|1.632e-5345.93tRNA (guanosine(46)-N7)-methyltransferase TrmB [To... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1984rna1984Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications