EWM28812.1, cds1979 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|585111235|gb|EWM28812.1| (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0 Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0
Query: 1 MLQREISKGLRFIRRRVLFLVYICFFTCNLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLKSRCLCAGPQREGGKKEYTDIHALQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCRDNH 337
MLQREISKGLRFIRRRVLFLVYICFFTCNLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLKSRCLCAGPQREGGKKEYTDIHALQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCRDNH
Sbjct: 1 MLQREISKGLRFIRRRVLFLVYICFFTCNLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLKSRCLCAGPQREGGKKEYTDIHALQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCRDNH 337
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1121319767|ref|WP_073629906.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Scytonema sp. HK-05] >gi|1115296241|gb|OKH59236.1| tRNA (guanosine(46)-N7)-methyltransferase TrmB [Scytonema sp. HK-05] >gi|1210126257|dbj|BAY45371.1| tRNA (guanine-N(7))-methyltransferase [Scytonema sp. HK-05]) HSP 1 Score: 186.808 bits (473), Expect = 1.521e-54 Identity = 102/209 (48.80%), Postives = 138/209 (66.03%), Query Frame = 0
Query: 124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVF 332
+RQHVNPLS YQ P + +W E +A P+ P H+DIG ARGRF + MA+ P+ NFLGLEIR P V E+ K ++ + N+H+L NVN L +++ + K + + R ++QFPDP FK +H KRR++QP LV + SL GG +F+QSD+E VAV MRD F E A G W+ ENPL VPTERE+ T+++G+PVYR VF
Sbjct: 6 VRQHVNPLSQKYQTPLS-PIEW-EKIYAKPNQPLHLDIGCARGRFLLSMAKTEPNWNFLGLEIREPLVIEANKWRDELGL-TNLHYLFCNVNNSLRSLLSSLPKGT-LQRVTIQFPDPWFKNRHAKRRIVQPELVVELAESL-IPGGIVFLQSDIEFVAVEMRDRFAEHPGFQRRGA-GEWLAENPLPVPTEREIGTMNKGEPVYRAVF 208
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|971071222|ref|WP_058881409.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Oscillatoriales cyanobacterium MTP1]) HSP 1 Score: 186.422 bits (472), Expect = 1.717e-54 Identity = 100/211 (47.39%), Postives = 136/211 (64.45%), Query Frame = 0
Query: 124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
+RQHVNPL+ YQ+P W D FANP LP H+DIG ARGRF + MA P NFLGLEIR P V E+ ++ R N+H++ N N+ L ++A + + + R S+QFPDP FK +H+KRRV+QP LV+ + L + G E+F+QSDV EVAV M D F+E+ G W+ ENP+ VPTERE+ T ++G+PVYR +F +
Sbjct: 6 VRQHVNPLAQKYQQPTQPPV-W-SDVFANPQLPLHLDIGCARGRFVLKMAELQPGWNFLGLEIREPLVIEA-NRIRDERGLTNLHYVFCNANLSLRSLLASLPPQT-LQRVSIQFPDPWFKKRHQKRRVVQPELVSDLAEFLPT-GAEVFLQSDVWEVAVEMGDRFQENLAFV---RQGDWLAENPMPVPTEREIATQNKGEPVYRILFVK 208
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1210089296|dbj|BAY08432.1| (hypothetical protein NIES2098_15920 [Calothrix sp. NIES-2098]) HSP 1 Score: 186.422 bits (472), Expect = 2.342e-54 Identity = 93/211 (44.08%), Postives = 139/211 (65.88%), Query Frame = 0
Query: 124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
+RQHVNPL+ YQ P N S W + +A P P H+DIG ARGRF ++MA+ P+ NFLGLEIR P V E+ + + + N+H+L NVN L +++ + + + + R ++QFPDP FKT+H KRR++QP LV+ + + + GG +F+QSD+E +A+ MRD F ++ SA G W+ ENPL V TERE+ T ++ +P+YR +F +
Sbjct: 6 VRQHVNPLAQKYQTPVN-SLDW-DKLYAQPHQPLHLDIGCARGRFLLHMAQIEPNWNFLGLEIREPLVVEANQLCSDWGLT-NLHYLFCNVNRSLNALLSSLPEGT-LQRVTIQFPDPWFKTRHAKRRIVQPELVSDLAKYVAA-GGVVFLQSDIEFLAIEMRDIFAQNPAFQKLSA-GEWLTENPLPVSTEREIATQNKSEPIYRALFIK 210
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|515888644|ref|WP_017319227.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Mastigocladopsis repens]) HSP 1 Score: 186.422 bits (472), Expect = 2.734e-54 Identity = 100/211 (47.39%), Postives = 136/211 (64.45%), Query Frame = 0
Query: 124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
+RQHVNPLS YQ PAN W E +A + P H+DIG+ARGRF + MA+ P NFLGLEIR P V ++ K ++ + N+H+L NVN L +++ + K S + R ++QFPDP FK +H KRR++QP LVA + L GG +F+QSD+E VAV M D F E +G W+ +NPL VPTERE+ T+ +G+PVYR +F R
Sbjct: 12 VRQHVNPLSQKYQTPAN-PINW-EKVYAKTNQPLHLDIGAARGRFLLSMAKIEPSWNFLGLEIREPLVIDANKWRDELGLT-NLHYLFCNVNNSLRSLLSFLPKGS-LKRVTIQFPDPWFKNRHAKRRIVQPELVAELAEFL-VPGGIVFLQSDIEFVAVQMCDRFAEHPAFQRV-GTGEWLAQNPLPVPTEREIGTIKKGEPVYRALFER 216
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|938305719|gb|KPQ39139.1| (tRNA (guanine-N(7)-)-methyltransferase TrmB [Phormidium sp. OSCR]) HSP 1 Score: 185.652 bits (470), Expect = 3.755e-54 Identity = 101/214 (47.20%), Postives = 138/214 (64.49%), Query Frame = 0
Query: 124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKD---NVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
+RQHVNPLS YQ+P + W + + NP P H+DIG ARGRF +A + PD NFLGLEIR+ V+E+ ++R +D N+H+L N+NV E ++ + + + R S+QFPDP FK +H KRRV+QP LV + L +D GEIF+QSDVEEVA+ MRD E A + S W+ +NPL V TERE+ T ++G+PVYR +F R
Sbjct: 6 VRQHVNPLSRKYQQPVPL-PDWTK-IYDNPQQPLHLDIGCARGRFLYELAPQQPDWNFLGLEIRQSLVDEA----NQWRDRDNLTNLHYLYCNINVMSEALLQSLPQGC-LKRVSIQFPDPWFKKRHHKRRVVQPELVEDLARFLAAD-GEIFLQSDVEEVAIEMRDRLSEHP--AFTATSDDWLPDNPLPVATEREIATYNKGEPVYRCIFRR 209
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1057521824|ref|WP_068818696.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Phormidesmis priestleyi]) HSP 1 Score: 185.267 bits (469), Expect = 5.085e-54 Identity = 98/211 (46.45%), Postives = 138/211 (65.40%), Query Frame = 0
Query: 124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
+R+HVNPLS YQ PA S W E +A+ +LP H+DIG RGRF + MA+ P+ NFLGLEIR P V++S + ++ ++ N+H+L NVN L ++A + K + + ++QFPDP FK KH+KRRV+QP +V + L S+GG +F+QSD+EEVA+ M D F A W+ +NP+ +PTERE TL RG+PVYR VF +
Sbjct: 6 VREHVNPLSRKYQTPAE-SPDW-EKIYADLTLPLHLDIGCGRGRFLLKMAQLQPEWNFLGLEIREPLVDQSIEFRDQLGLQ-NLHYLFCNVNNSLPALLAPL-KPGTLQQVTIQFPDPWFKRKHQKRRVVQPEVVEELALHL-SNGGRVFVQSDIEEVAIEMVDRFAAHP--AFHRQDCDWLTDNPMPIPTEREASTLERGEPVYRAVFYK 209
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1060042901|ref|WP_069070967.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Nostoc sp. KVJ20] >gi|1059439219|gb|ODG96761.1| tRNA (guanosine(46)-N7)-methyltransferase TrmB [Nostoc sp. KVJ20]) HSP 1 Score: 185.267 bits (469), Expect = 6.977e-54 Identity = 99/211 (46.92%), Postives = 132/211 (62.56%), Query Frame = 0
Query: 124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
+RQHVNPL YQ PAN W E +A P+ P H+DIG A+G+F + MA+ P+ NFLGLEIR P V E+ K+ N+H+L NVN + + + ++QFPDP FKT+H KRRV+QP LVA + L + GG +F+QSD+E VAV MRD F E+ + +G W+ ENPL VPTERE+ T +G+PVYR +F R
Sbjct: 6 VRQHVNPLGKKYQTPAN-PLDW-EKVYAKPNQPLHLDIGCAKGQFLLNMAKIEPNWNFLGLEIREPLVVEA-NKLRSELALTNLHYLFCNVN-NSLHSLLSSLPPGSLQHVTIQFPDPWFKTRHAKRRVVQPELVADLAKYL-AVGGFVFLQSDMEFVAVEMRDRFAENPDF-EKIGTGEWLTENPLPVPTEREIGTQKKGEPVYRALFVR 210
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|1084332127|ref|WP_070396186.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Moorea producens] >gi|1082414215|gb|AOX03820.1| tRNA (guanosine(46)-N7)-methyltransferase TrmB [Moorea producens PAL-8-15-08-1]) HSP 1 Score: 184.882 bits (468), Expect = 8.340e-54 Identity = 98/211 (46.45%), Postives = 131/211 (62.09%), Query Frame = 0
Query: 124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
+RQHVNPLS YQ P +SA +A + P H+DIG RG F + MA E PD NFLGLEIR P V+++ K+ + N+ FL N N ++ +++ S + R ++QFPDP FK + KRR++QP LV + + L S GGE+F+QSDVEEVAV MR F + AW+ NPL VPTERE+ TL+RG+PVYR +F R
Sbjct: 6 VRQHVNPLSKQYQMP--VSAPDWNQVYAQTTKPLHLDIGCGRGEFLLQMATEQPDWNFLGLEIREPLVKQANTKVVDLGL-SNLLFLFCNANSSIDSLLSSWPPGS-LQRVTIQFPDPWFKKRQAKRRIVQPTLVDTLGAYLTS-GGEVFVQSDVEEVAVEMRSRFDAHPVFYRPET--AWLPTNPLPVPTEREISTLARGEPVYRMLFFR 209
BLAST of EWM28812.1 vs. NCBI_GenBank
Match: gi|740243083|ref|WP_038084102.1| (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Tolypothrix bouteillei] >gi|744448027|gb|KIE08865.1| tRNA (guanine-N7)-methyltransferase [Tolypothrix bouteillei VB521301]) HSP 1 Score: 184.111 bits (466), Expect = 1.632e-53 Identity = 96/209 (45.93%), Postives = 134/209 (64.11%), Query Frame = 0
Query: 124 IRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVF 332
+RQHVNPL+ YQ P N W E FA P+LP H+DIG A+GRF + MA+ P NFLGLEIR P V ++ + ++ ++ N+H+L N N L +++ + + + R ++QFPDP FK +H KRRV+QP LVA + L GG +F+QSD+E +AV M D F ++ G W+ ENPL VPTERE TL++G+PVYR +F
Sbjct: 6 VRQHVNPLAHKYQTPLN-PPNW-EKVFAQPNLPLHLDIGCAKGRFVLNMAQVEPMWNFLGLEIREPLVADANRLRDELGLR-NLHYLFCNANNSLRPLLSSL-PQTRLQRVTIQFPDPWFKNRHAKRRVVQPELVAELAEFLLP-GGIVFLQSDMEFLAVEMCDRFAANSAFVR-HGKGEWLAENPLSVPTERETYTLNKGEPVYRAIF 208 The following BLAST results are available for this feature:
BLAST of EWM28812.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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