rna1983, rna1983 (mRNA) Nannochloropsis gaditana

Overview
Namerna1983
Unique Namerna1983
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length798
Alignment locationCM002458.1:621013..622145 +

Link to JBrowse

Properties
Property NameValue
ProducttRNA/rRNA methyltransferase, SpoU
Orig transcript idgnl|cribi|Naga_100002g35.4853.mrna
Orig protein idgnl|cribi|Naga_100002g35.4853
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:621013..622145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g35gene1894Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1983rna1983-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28734.1cds1978Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1983 ID=rna1983|Name=rna1983|organism=Nannochloropsis gaditana|type=mRNA|length=798bp
ATGACGGTCCCCAATGTTGAATTTTCTCTTCTTACTTCTTTAAAGCTTCA
GGCTCTGGAGGCGACAAAAGTCTTCTCGAGTTCCGAGATGTCTCCTGCAA
GAAGGCCGCGACGAGTGAGAACCCCGGCACGGCTCAGCACGCTGATAACT
CTATGGGGTTTCGCTCTGTTGATGGCGCGGTCCACCGACCTGATCGCAGA
TGCTGTCTCCCCTGCACGACTTCTGAAGACCTTTGTGGAGCAGCAGCAGC
AGCATCGCGAAGGTTTGATAAAGACGAAGTGGGACGGCAATTATTGTTCT
GGACCGGCGTCTTTGTCTACCAGGTCGGCACTGCGAGCCAGAAACGGGAT
GATTTCTGCGTCCACGTGCGCAAGTTCTGTCAAAAAACGTGTAGAGAGAC
CGATTCGCATTGTGGAAAGGAGGGCTTTTATTGGGGGAGGCGACGGTGGA
GGTTTGACAGACGTTTGGGGTGTAAGTAACGGGAATAGGGGGCTCTCAAG
GCAGGTCAGCTGCTTGGCCAGTGATATGGGTCTGAGTGGACTTGGAGGCA
TGGCAGCAGGCTATGCAGCCAAAAGATTTGGGAGATTGTTAAGTTTTGCG
TGTGGCTTCGTGCTGGTGTCCATGAAGGTCGCCGAGGAGCTCGGGTACGT
AGCCGTGGACTGGGAGAAGATCGAGGGCGACGCCCGCCGGATCGACGGGG
AGAAAGAGGACTGTGCAGAGCGCGACAAATATAAGTTTCGATGCGCAGAG
TACGTGCGGCTGTTAGATAATTGTGTAGAGCAAAGATATACAAACTAA
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protein sequence of rna1983

>rna1983-protein ID=rna1983-protein|Name=rna1983|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MQHENILKDVSGKEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCL
VGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSA
CRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDA
AFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ
FEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIW
SGFWGKGALAEK
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mRNA from alignment at CM002458.1:621013..622145+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1983 ID=rna1983|Name=rna1983|organism=Nannochloropsis gaditana|type=mRNA|length=1133bp|location=Sequence derived from alignment at CM002458.1:621013..622145+ (Nannochloropsis gaditana)
ATGCAGCATGAAAACATTCTCAAGGATGTgtcagggaaagaaaaggggga
gcaAAGTCAATTTATGGTGGCTATCGAGGTCGAGAAGAAGGTGGGCACGT
TAacctcccctgtcctcccgTTGTTGCATAAATCTTGCTCTTTATCGTTC
TCAATCATGCAATATGTTCGAAAAACAAAACATAGACAAATGCCGGAACT
CTTGTGAGATGCAGTGTAGCCTTTGGTGCGACCTCTTTGTGCCTAGTAGG
CGTGGGAAGACCGCGCTTTTCAAAGCATGGCTCCTTTGGTAAGGTTGACA
GCACATGAGAGGACAAGTAGGTGTCCGGAGGGATCTAGGTATGCCTATTT
ACATCTAAAACATAACCTTGAAAGTGAATTGGTAATGCGTTTTTACTAGC
GCTTCTTTTCCTAAACTTCGAAGGGAGTCACCACTACTTGCCCACAAGGT
CATTCACAAGCTGGCAAGCTCTACGACAATTTGCTGACAATCGAAAATTC
CACGTGATCGGCGTCAGCTCAAGCAGCGCGTGCCGAACGACCTCGGTAAG
CTTGCGGCCCTTTGAAGGCTCTACCATATTTGTCTCGCCAACCAGAGGTA
AGACGCTGACAACGGAACAGCTTCAGGCTTGCCACTTTCTGGTTCATGTG
CGCGTTGCTGGTGGACCCGCAGTTGATGCAGCATTCAGCACATTGGGCGG
AGGATTAACGCTGGACACAGATGTAGCTTTGTCGATTGTTTTGCATCATT
TTACAGCTTGGAGCAGGTACAACACCCACAGGTAGGACACACCAAATCTG
GACCTTGCTTTACTGTGGTGCCTCTCTTCCCTAGTAAACGTTTTCGACGC
ATAGAAACTCGACAAGTAATTGTACATTGCTTGCACATGCCGTAGGTTTT
GTGGGCAGAAGTACGTGAAGGGACAGGCAAGAAAGGTGGGACAAtttgag
gacgaggagcaaCATCGACTGCGCAACGAGCGGAGACAGCAACGACTCAA
GGCCGACATATTATCACAGCCGGAAACCGAGTCAACAGAAGTCACAAACG
CAGAAGAAGTGAatcaggaggcggaggagaaagtcTCAATATGGTCCGGG
TTCTGGGGCAAGGGGGCTTTAGCTGAGAAGTGA
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Coding sequence (CDS) from alignment at CM002458.1:621013..622145+

>rna1983 ID=rna1983|Name=rna1983|organism=Nannochloropsis gaditana|type=CDS|length=3156bp|location=Sequence derived from alignment at CM002458.1:621013..622145+ (Nannochloropsis gaditana)
ATGCAGCATGAAAACATTCTCAAGGATGTgtcagggaaagaaaaggggga
gcaAAGTCAATTTATGGTGGCTATCGAGGTCGAGAAGAAGACAAATGCCG
GAACTCTTGTGAGATGCAGTGTAGCCTTTGGTGCGACCTCTTTGTGCCTA
GTAGGCGTGGGAAGACCGCGCTTTTCAAAGCATGGCTCCTTTGGGAGTCA
CCACTACTTGCCCACAAGGTCATTCACAAGCTGGCAAGCTCTACGACAAT
TTGCTGACAATCGAAAATTCCACGTGATCGGCGTCAGCTCAAGCAGCGCG
TGCCGAACGACCTCGGTAAGCTTGCGGCCCTTTGAAGGCTCTACCATATT
TGTCTCGCCAACCAGAGGTAAGACGCTGACAACGGAACAGCTTCAGGCTT
GCCACTTTCTGGTTCATGTGCGCGTTGCTGGTGGACCCGCAGTTGATGCA
GCATTCAGCACATTGGGCGGAGGATTAACGCTGGACACAGATGTAGCTTT
GTCGATTGTTTTGCATCATTTTACAGCTTGGAGCAGGTACAACACCCACA
GGTTTTGTGGGCAGAAGTACGTGAAGGGACAGGCAAGAAAGGTGGGACAA
tttgaggacgaggagcaaCATCGACTGCGCAACGAGCGGAGACAGCAACG
ACTCAAGGCCGACATATTATCACAGCCGGAAACCGAGTCAACAGAAGTCA
CAAACGCAGAAGAAGTGAatcaggaggcggaggagaaagtcTCAATATGG
TCCGGGTTCTGGGGCAAGGGGGCTTTAGCTGAGAAGTGAATGCAGCATGA
AAACATTCTCAAGGATGTgtcagggaaagaaaagggggagcaAAGTCAAT
TTATGGTGGCTATCGAGGTCGAGAAGAAGACAAATGCCGGAACTCTTGTG
AGATGCAGTGTAGCCTTTGGTGCGACCTCTTTGTGCCTAGTAGGCGTGGG
AAGACCGCGCTTTTCAAAGCATGGCTCCTTTGGGAGTCACCACTACTTGC
CCACAAGGTCATTCACAAGCTGGCAAGCTCTACGACAATTTGCTGACAAT
CGAAAATTCCACGTGATCGGCGTCAGCTCAAGCAGCGCGTGCCGAACGAC
CTCGGTAAGCTTGCGGCCCTTTGAAGGCTCTACCATATTTGTCTCGCCAA
CCAGAGGTAAGACGCTGACAACGGAACAGCTTCAGGCTTGCCACTTTCTG
GTTCATGTGCGCGTTGCTGGTGGACCCGCAGTTGATGCAGCATTCAGCAC
ATTGGGCGGAGGATTAACGCTGGACACAGATGTAGCTTTGTCGATTGTTT
TGCATCATTTTACAGCTTGGAGCAGGTACAACACCCACAGGTTTTGTGGG
CAGAAGTACGTGAAGGGACAGGCAAGAAAGGTGGGACAAtttgaggacga
ggagcaaCATCGACTGCGCAACGAGCGGAGACAGCAACGACTCAAGGCCG
ACATATTATCACAGCCGGAAACCGAGTCAACAGAAGTCACAAACGCAGAA
GAAGTGAatcaggaggcggaggagaaagtcTCAATATGGTCCGGGTTCTG
GGGCAAGGGGGCTTTAGCTGAGAAGTGAATGCAGCATGAAAACATTCTCA
AGGATGTgtcagggaaagaaaagggggagcaAAGTCAATTTATGGTGGCT
ATCGAGGTCGAGAAGAAGACAAATGCCGGAACTCTTGTGAGATGCAGTGT
AGCCTTTGGTGCGACCTCTTTGTGCCTAGTAGGCGTGGGAAGACCGCGCT
TTTCAAAGCATGGCTCCTTTGGGAGTCACCACTACTTGCCCACAAGGTCA
TTCACAAGCTGGCAAGCTCTACGACAATTTGCTGACAATCGAAAATTCCA
CGTGATCGGCGTCAGCTCAAGCAGCGCGTGCCGAACGACCTCGGTAAGCT
TGCGGCCCTTTGAAGGCTCTACCATATTTGTCTCGCCAACCAGAGGTAAG
ACGCTGACAACGGAACAGCTTCAGGCTTGCCACTTTCTGGTTCATGTGCG
CGTTGCTGGTGGACCCGCAGTTGATGCAGCATTCAGCACATTGGGCGGAG
GATTAACGCTGGACACAGATGTAGCTTTGTCGATTGTTTTGCATCATTTT
ACAGCTTGGAGCAGGTACAACACCCACAGGTTTTGTGGGCAGAAGTACGT
GAAGGGACAGGCAAGAAAGGTGGGACAAtttgaggacgaggagcaaCATC
GACTGCGCAACGAGCGGAGACAGCAACGACTCAAGGCCGACATATTATCA
CAGCCGGAAACCGAGTCAACAGAAGTCACAAACGCAGAAGAAGTGAatca
ggaggcggaggagaaagtcTCAATATGGTCCGGGTTCTGGGGCAAGGGGG
CTTTAGCTGAGAAGTGAATGCAGCATGAAAACATTCTCAAGGATGTgtca
gggaaagaaaagggggagcaAAGTCAATTTATGGTGGCTATCGAGGTCGA
GAAGAAGACAAATGCCGGAACTCTTGTGAGATGCAGTGTAGCCTTTGGTG
CGACCTCTTTGTGCCTAGTAGGCGTGGGAAGACCGCGCTTTTCAAAGCAT
GGCTCCTTTGGGAGTCACCACTACTTGCCCACAAGGTCATTCACAAGCTG
GCAAGCTCTACGACAATTTGCTGACAATCGAAAATTCCACGTGATCGGCG
TCAGCTCAAGCAGCGCGTGCCGAACGACCTCGGTAAGCTTGCGGCCCTTT
GAAGGCTCTACCATATTTGTCTCGCCAACCAGAGGTAAGACGCTGACAAC
GGAACAGCTTCAGGCTTGCCACTTTCTGGTTCATGTGCGCGTTGCTGGTG
GACCCGCAGTTGATGCAGCATTCAGCACATTGGGCGGAGGATTAACGCTG
GACACAGATGTAGCTTTGTCGATTGTTTTGCATCATTTTACAGCTTGGAG
CAGGTACAACACCCACAGGTTTTGTGGGCAGAAGTACGTGAAGGGACAGG
CAAGAAAGGTGGGACAAtttgaggacgaggagcaaCATCGACTGCGCAAC
GAGCGGAGACAGCAACGACTCAAGGCCGACATATTATCACAGCCGGAAAC
CGAGTCAACAGAAGTCACAAACGCAGAAGAAGTGAatcaggaggcggagg
agaaagtcTCAATATGGTCCGGGTTCTGGGGCAAGGGGGCTTTAGCTGAG
AAGTGA
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Synonyms
Publications