EWM28734.1, cds1978 (CDS) Nannochloropsis gaditana

Overview
NameEWM28734.1
Unique Namecds1978
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:621013..621102 +
Alignment locationCM002458.1:621198..621300 +
Alignment locationCM002458.1:621436..621793 +
Alignment locationCM002458.1:621908..622145 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28734.1
ProducttRNA/rRNA methyltransferase, SpoU
Orig transcript idgnl|cribi|Naga_100002g35.4853.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:621013..621102 +
CM002458.1supercontigCM002458.1:621198..621300 +
CM002458.1supercontigCM002458.1:621436..621793 +
CM002458.1supercontigCM002458.1:621908..622145 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
GO:0008173RNA methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR001537SpoU_MeTrfase
IPR029026tRNA_m1G_MTases_N
Homology
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|585111157|gb|EWM28734.1| (tRNA/rRNA methyltransferase, SpoU [Nannochloropsis gaditana])

HSP 1 Score: 541.576 bits (1394), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query:    1 MQHENILKDVSGKEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIWSGFWGKGALAEK 262
            MQHENILKDVSGKEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIWSGFWGKGALAEK
Sbjct:    1 MQHENILKDVSGKEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIWSGFWGKGALAEK 262          
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|734319371|gb|KHN03411.1| (tRNA (guanosine(18)-2'-O)-methyltransferase [Glycine soja] >gi|947052709|gb|KRH02162.1| hypothetical protein GLYMA_17G020700 [Glycine max])

HSP 1 Score: 96.2857 bits (238), Expect = 1.572e-20
Identity = 71/214 (33.18%), Postives = 105/214 (49.07%), Query Frame = 0
Query:   21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKADILSQPETES 230
            F+V   + K+ N GTL R + AFG + L LVG  R  F+  GS GS  +L  R F S Q  R+F  ++ F + GV  ++   +  V+  PF  ST F+    G  L+ ++++ C F V++   GG           G  +L+  VA SIVLHHF  W+ +      G K+V  + R V Q    +  E +  +  ER+ +R  A      ETES
Sbjct:    6 FVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNCFGSHGSSSHLRFRHFHSLQDARKFLKDKDFDICGVEITT--DSLPVNQHPFTKSTAFLLGNEGTGLSPKEIEICDFFVYIPQYGG-----------GTASLNVTVAASIVLHHFGVWAGFTERSRDGNKFVVAE-RPVKQGGRNYCTETEDSIIEERKARRENAANGFFDETES 203          
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|351725083|ref|NP_001236568.1| (uncharacterized protein LOC100305780 [Glycine max] >gi|255626589|gb|ACU13639.1| unknown [Glycine max])

HSP 1 Score: 95.9005 bits (237), Expect = 2.362e-20
Identity = 71/214 (33.18%), Postives = 105/214 (49.07%), Query Frame = 0
Query:   21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKADILSQPETES 230
            F+V   + K+ N GTL R + AFG + L LVG  R  F+  GS GS  +L  R F S Q  R+F  ++ F + GV  ++   +  V+  PF  ST F+    G  L+ ++++ C F V++   GG           G  +L+  VA SIVLHHF  W+ +      G K+V  + R V Q    +  E +  +  ER+ +R  A      ETES
Sbjct:    6 FVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNCFGSHGSSSHLRFRHFHSLQDARKFLKDKDFDICGVEITT--DSLPVNQHPFTKSTAFLLGNEGTGLSPKEIEICGFFVYIPQYGG-----------GTASLNVTVAASIVLHHFGVWAGFTERSRDGNKFVVAE-RPVKQGGRNYCTETEDSIIEERKARRENAANGFFDETES 203          
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|1012004119|ref|XP_015939488.1| (uncharacterized protein LOC107465028 [Arachis duranensis] >gi|1021472548|ref|XP_016196715.1| uncharacterized protein LOC107638025 [Arachis ipaensis])

HSP 1 Score: 93.2041 bits (230), Expect = 2.316e-19
Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 0
Query:   21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKA 220
            ++V   + K+ N GTL R + AFG + L LVG  R  F+  GS GS  +L  R F S    RQF   + F + GV  +       V+  PF+ ST F+    G  L+ ++ + C F V++   GG           G  +L+  VA SIVLHHF  W+ +      G K+V  + R V Q    F  E +  +  ER+ +R  A
Sbjct:    6 YVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNSFGSHGSSAHLRFRHFHSLHDARQFLKEKDFDICGVEITE--NAMPVNQHPFKKSTAFLLGNEGTGLSAKECEICDFFVYIPQYGG-----------GTASLNVTVAASIVLHHFGVWAGFGERSRDGNKFVVAE-RPVKQVRRNFCTETEDDIVEERKARRENA 193          
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|224102553|ref|XP_002312722.1| (tRNA/rRNA methyltransferase family protein [Populus trichocarpa] >gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa] >gi|222852542|gb|EEE90089.1| tRNA/rRNA methyltransferase family protein [Populus trichocarpa])

HSP 1 Score: 92.8189 bits (229), Expect = 2.879e-19
Identity = 67/220 (30.45%), Postives = 105/220 (47.73%), Query Frame = 0
Query:   18 QSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQ-ARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNA 236
            +  ++V   + K+ N GTL R + AFG   L LVG  R  F+  GS GS  +LP R F S    R F   +   + GV  + +     V+  PF+ ST F+    G  L+T++ + C F V++   G            G  +L+  VA SIVLHHF  W+ ++     G K++  +   K G++  E +  +  ER+ +R  A      ET + E T++
Sbjct:    3 RESYVVVHNIAKRHNVGTLARSATAFGVKELILVG--RRDFNSFGSHGSTSHLPFRHFHSLSDARNFLKEKDCDICGVEITDS--AFPVNEHPFKRSTAFLLGNEGTGLSTKECEICDFFVYIPQYGC-----------GTASLNVTVAASIVLHHFGVWAGFSERSRDGHKFIVAERPVKQGKYCTETEESIIQERKSRRENASNGFFDETRNAESTSS 207          
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|1024053448|gb|KZV52238.1| (hypothetical protein F511_41264 [Dorcoceras hygrometricum])

HSP 1 Score: 92.4337 bits (228), Expect = 4.561e-19
Identity = 57/181 (31.49%), Postives = 90/181 (49.72%), Query Frame = 0
Query:   11 SGKEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYV 191
            SG+++G+   ++V   + K+ N GTL R + AFG   + L  VGR  F+  GS GS  ++  R+F S    R F   R   + GV  +   R  +V+  PF  ST F+    G  L+ ++ + C F +++   G           GG  +L+  VA SIVLHHF  W+ ++     G K++
Sbjct:    3 SGEKEGKYDSYVVVHNIAKRHNVGTLARSATAFGVEEMIL--VGRRDFNAFGSHGSTSHVRFRNFPSLSLARSFLKERDCDICGVEITDGAR--AVNDHPFRKSTAFLLGNEGTGLSDKECEICDFFIYIPQYG-----------GGTASLNVTVAASIVLHHFGVWAGFSERAREGSKFI 168          
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|743923948|ref|XP_011006082.1| (PREDICTED: rRNA methyltransferase 1, mitochondrial [Populus euphratica])

HSP 1 Score: 90.1225 bits (222), Expect = 2.863e-18
Identity = 67/220 (30.45%), Postives = 104/220 (47.27%), Query Frame = 0
Query:   18 QSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQ-ARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNA 236
            +  ++V   + K+ N GTL R + AFG   L L  VGR  F+  GS GS  +LP R F S    R F   +   + GV  + +     V+  PF+ ST F+    G  L+T++ + C F V++   G            G  +L+  VA SIVLHHF  W+  +     G K++  +   K G++  E +  +  ER+ +R  A      ET + E T++
Sbjct:    3 RESYVVVHNIAKRHNVGTLARSATAFGVKELIL--VGRRDFNSFGSHGSTSHLPFRHFHSLSDARNFLIEKDCDICGVEITDS--AFPVNEHPFKRSTAFLLGNEGTGLSTKECEICDFFVYIPQYG-----------CGTASLNVTVAASIVLHHFGVWAGLSERSRDGHKFIVAERPVKQGKYCTETEESIIQERKSRRENASRGFFDETRNAESTSS 207          
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|593782317|ref|XP_007154199.1| (hypothetical protein PHAVU_003G098300g [Phaseolus vulgaris] >gi|561027553|gb|ESW26193.1| hypothetical protein PHAVU_003G098300g [Phaseolus vulgaris])

HSP 1 Score: 90.1225 bits (222), Expect = 3.016e-18
Identity = 65/204 (31.86%), Postives = 99/204 (48.53%), Query Frame = 0
Query:   21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKA 220
            ++V   + K+ N GTL R + AFG + L LVG  R  F+  GS GS  +L  R F S    R F  ++   + GV  ++      V+  PF+ ST F+    G+ L+ +++Q C F V++   G            G  +L+  VA SIVLHHF  W+ +      G K+V G+ R V Q    +  E +  +  ER+ +R  A
Sbjct:    6 YVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNCFGSHGSSSHLRFRHFHSLHDARDFLKDKDCDICGVEITN--DALPVNHHPFKKSTAFLLGNEGQGLSPKEIQICDFFVYIPQYGA-----------GTASLNVTVAASIVLHHFAVWAGFEERSRDGSKFVVGE-RPVKQGRRNYCTEAKDSIIEERKARRESA 193          
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|543176582|gb|AGV54314.1| (rRNA methylase [Phaseolus vulgaris])

HSP 1 Score: 89.3521 bits (220), Expect = 5.794e-18
Identity = 65/204 (31.86%), Postives = 99/204 (48.53%), Query Frame = 0
Query:   21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKA 220
            ++V   + K+ N GTL R + AFG + L LVG  R  F+  GS GS  +L  R F S    R F  ++   + GV  ++      V+  PF+ ST F+    G+ L+ +++Q C F V++   G            G  +L+  VA SIVLHHF  W+ +      G K+V G+ R V Q    +  E +  +  ER+ +R  A
Sbjct:    6 YVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNCFGSHGSSSHLRFRHFHSLHDARDFLKDKGCDICGVEITN--DALPVNHHPFKKSTAFLLGNEGQGLSPKEIQICDFFVYIPQYGA-----------GTASLNVTVAASIVLHHFAVWAGFEERSRDGSKFVVGE-RPVKQGRRNYCTEAKDSIIEERKARRESA 193          
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|568872098|ref|XP_006489210.1| (PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Citrus sinensis])

HSP 1 Score: 88.9669 bits (219), Expect = 8.242e-18
Identity = 65/203 (32.02%), Postives = 98/203 (48.28%), Query Frame = 0
Query:   21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQ--ARKVGQ-FEDEEQHRLRNERRQQRLKA 220
            ++V   + K+ N GTL R + AFG + + LVG  R  F+  GS GS  ++  R F S    R F  ++   + GV  +       V+  PF+ ST F+    G  L+ ++ + C F V++   GG           G  +L+  VA SIVLHHF  W+ ++     G KYV  +  AR+V Q F  E+   +   RR +R  A
Sbjct:    5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVG--RRDFNAFGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVEITD--NAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGG-----------GTASLNVTVAASIVLHHFGVWAGFSERTRDGNKYVVAERSARQVRQSFCAEKPESIIEMRRSRRENA 192          
The following BLAST results are available for this feature:
BLAST of EWM28734.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111157|gb|EWM28734.1|0.000e+0100.00tRNA/rRNA methyltransferase, SpoU [Nannochloropsis... [more]
gi|734319371|gb|KHN03411.1|1.572e-2033.18tRNA (guanosine(18)-2'-O)-methyltransferase [Glyci... [more]
gi|351725083|ref|NP_001236568.1|2.362e-2033.18uncharacterized protein LOC100305780 [Glycine max]... [more]
gi|1012004119|ref|XP_015939488.1|2.316e-1932.84uncharacterized protein LOC107465028 [Arachis dura... [more]
gi|224102553|ref|XP_002312722.1|2.879e-1930.45tRNA/rRNA methyltransferase family protein [Populu... [more]
gi|1024053448|gb|KZV52238.1|4.561e-1931.49hypothetical protein F511_41264 [Dorcoceras hygrom... [more]
gi|743923948|ref|XP_011006082.1|2.863e-1830.45PREDICTED: rRNA methyltransferase 1, mitochondrial... [more]
gi|593782317|ref|XP_007154199.1|3.016e-1831.86hypothetical protein PHAVU_003G098300g [Phaseolus ... [more]
gi|543176582|gb|AGV54314.1|5.794e-1831.86rRNA methylase [Phaseolus vulgaris][more]
gi|568872098|ref|XP_006489210.1|8.242e-1832.02PREDICTED: putative TrmH family tRNA/rRNA methyltr... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1983rna1983Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications