EWM28734.1, cds1978 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|585111157|gb|EWM28734.1| (tRNA/rRNA methyltransferase, SpoU [Nannochloropsis gaditana]) HSP 1 Score: 541.576 bits (1394), Expect = 0.000e+0 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query: 1 MQHENILKDVSGKEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIWSGFWGKGALAEK 262
MQHENILKDVSGKEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIWSGFWGKGALAEK
Sbjct: 1 MQHENILKDVSGKEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIWSGFWGKGALAEK 262
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|734319371|gb|KHN03411.1| (tRNA (guanosine(18)-2'-O)-methyltransferase [Glycine soja] >gi|947052709|gb|KRH02162.1| hypothetical protein GLYMA_17G020700 [Glycine max]) HSP 1 Score: 96.2857 bits (238), Expect = 1.572e-20 Identity = 71/214 (33.18%), Postives = 105/214 (49.07%), Query Frame = 0
Query: 21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKADILSQPETES 230
F+V + K+ N GTL R + AFG + L LVG R F+ GS GS +L R F S Q R+F ++ F + GV ++ + V+ PF ST F+ G L+ ++++ C F V++ GG G +L+ VA SIVLHHF W+ + G K+V + R V Q + E + + ER+ +R A ETES
Sbjct: 6 FVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNCFGSHGSSSHLRFRHFHSLQDARKFLKDKDFDICGVEITT--DSLPVNQHPFTKSTAFLLGNEGTGLSPKEIEICDFFVYIPQYGG-----------GTASLNVTVAASIVLHHFGVWAGFTERSRDGNKFVVAE-RPVKQGGRNYCTETEDSIIEERKARRENAANGFFDETES 203
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|351725083|ref|NP_001236568.1| (uncharacterized protein LOC100305780 [Glycine max] >gi|255626589|gb|ACU13639.1| unknown [Glycine max]) HSP 1 Score: 95.9005 bits (237), Expect = 2.362e-20 Identity = 71/214 (33.18%), Postives = 105/214 (49.07%), Query Frame = 0
Query: 21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKADILSQPETES 230
F+V + K+ N GTL R + AFG + L LVG R F+ GS GS +L R F S Q R+F ++ F + GV ++ + V+ PF ST F+ G L+ ++++ C F V++ GG G +L+ VA SIVLHHF W+ + G K+V + R V Q + E + + ER+ +R A ETES
Sbjct: 6 FVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNCFGSHGSSSHLRFRHFHSLQDARKFLKDKDFDICGVEITT--DSLPVNQHPFTKSTAFLLGNEGTGLSPKEIEICGFFVYIPQYGG-----------GTASLNVTVAASIVLHHFGVWAGFTERSRDGNKFVVAE-RPVKQGGRNYCTETEDSIIEERKARRENAANGFFDETES 203
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|1012004119|ref|XP_015939488.1| (uncharacterized protein LOC107465028 [Arachis duranensis] >gi|1021472548|ref|XP_016196715.1| uncharacterized protein LOC107638025 [Arachis ipaensis]) HSP 1 Score: 93.2041 bits (230), Expect = 2.316e-19 Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 0
Query: 21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKA 220
++V + K+ N GTL R + AFG + L LVG R F+ GS GS +L R F S RQF + F + GV + V+ PF+ ST F+ G L+ ++ + C F V++ GG G +L+ VA SIVLHHF W+ + G K+V + R V Q F E + + ER+ +R A
Sbjct: 6 YVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNSFGSHGSSAHLRFRHFHSLHDARQFLKEKDFDICGVEITE--NAMPVNQHPFKKSTAFLLGNEGTGLSAKECEICDFFVYIPQYGG-----------GTASLNVTVAASIVLHHFGVWAGFGERSRDGNKFVVAE-RPVKQVRRNFCTETEDDIVEERKARRENA 193
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|224102553|ref|XP_002312722.1| (tRNA/rRNA methyltransferase family protein [Populus trichocarpa] >gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa] >gi|222852542|gb|EEE90089.1| tRNA/rRNA methyltransferase family protein [Populus trichocarpa]) HSP 1 Score: 92.8189 bits (229), Expect = 2.879e-19 Identity = 67/220 (30.45%), Postives = 105/220 (47.73%), Query Frame = 0
Query: 18 QSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQ-ARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNA 236
+ ++V + K+ N GTL R + AFG L LVG R F+ GS GS +LP R F S R F + + GV + + V+ PF+ ST F+ G L+T++ + C F V++ G G +L+ VA SIVLHHF W+ ++ G K++ + K G++ E + + ER+ +R A ET + E T++
Sbjct: 3 RESYVVVHNIAKRHNVGTLARSATAFGVKELILVG--RRDFNSFGSHGSTSHLPFRHFHSLSDARNFLKEKDCDICGVEITDS--AFPVNEHPFKRSTAFLLGNEGTGLSTKECEICDFFVYIPQYGC-----------GTASLNVTVAASIVLHHFGVWAGFSERSRDGHKFIVAERPVKQGKYCTETEESIIQERKSRRENASNGFFDETRNAESTSS 207
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|1024053448|gb|KZV52238.1| (hypothetical protein F511_41264 [Dorcoceras hygrometricum]) HSP 1 Score: 92.4337 bits (228), Expect = 4.561e-19 Identity = 57/181 (31.49%), Postives = 90/181 (49.72%), Query Frame = 0
Query: 11 SGKEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYV 191
SG+++G+ ++V + K+ N GTL R + AFG + L VGR F+ GS GS ++ R+F S R F R + GV + R +V+ PF ST F+ G L+ ++ + C F +++ G GG +L+ VA SIVLHHF W+ ++ G K++
Sbjct: 3 SGEKEGKYDSYVVVHNIAKRHNVGTLARSATAFGVEEMIL--VGRRDFNAFGSHGSTSHVRFRNFPSLSLARSFLKERDCDICGVEITDGAR--AVNDHPFRKSTAFLLGNEGTGLSDKECEICDFFIYIPQYG-----------GGTASLNVTVAASIVLHHFGVWAGFSERAREGSKFI 168
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|743923948|ref|XP_011006082.1| (PREDICTED: rRNA methyltransferase 1, mitochondrial [Populus euphratica]) HSP 1 Score: 90.1225 bits (222), Expect = 2.863e-18 Identity = 67/220 (30.45%), Postives = 104/220 (47.27%), Query Frame = 0
Query: 18 QSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQ-ARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNA 236
+ ++V + K+ N GTL R + AFG L L VGR F+ GS GS +LP R F S R F + + GV + + V+ PF+ ST F+ G L+T++ + C F V++ G G +L+ VA SIVLHHF W+ + G K++ + K G++ E + + ER+ +R A ET + E T++
Sbjct: 3 RESYVVVHNIAKRHNVGTLARSATAFGVKELIL--VGRRDFNSFGSHGSTSHLPFRHFHSLSDARNFLIEKDCDICGVEITDS--AFPVNEHPFKRSTAFLLGNEGTGLSTKECEICDFFVYIPQYG-----------CGTASLNVTVAASIVLHHFGVWAGLSERSRDGHKFIVAERPVKQGKYCTETEESIIQERKSRRENASRGFFDETRNAESTSS 207
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|593782317|ref|XP_007154199.1| (hypothetical protein PHAVU_003G098300g [Phaseolus vulgaris] >gi|561027553|gb|ESW26193.1| hypothetical protein PHAVU_003G098300g [Phaseolus vulgaris]) HSP 1 Score: 90.1225 bits (222), Expect = 3.016e-18 Identity = 65/204 (31.86%), Postives = 99/204 (48.53%), Query Frame = 0
Query: 21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKA 220
++V + K+ N GTL R + AFG + L LVG R F+ GS GS +L R F S R F ++ + GV ++ V+ PF+ ST F+ G+ L+ +++Q C F V++ G G +L+ VA SIVLHHF W+ + G K+V G+ R V Q + E + + ER+ +R A
Sbjct: 6 YVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNCFGSHGSSSHLRFRHFHSLHDARDFLKDKDCDICGVEITN--DALPVNHHPFKKSTAFLLGNEGQGLSPKEIQICDFFVYIPQYGA-----------GTASLNVTVAASIVLHHFAVWAGFEERSRDGSKFVVGE-RPVKQGRRNYCTEAKDSIIEERKARRESA 193
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|543176582|gb|AGV54314.1| (rRNA methylase [Phaseolus vulgaris]) HSP 1 Score: 89.3521 bits (220), Expect = 5.794e-18 Identity = 65/204 (31.86%), Postives = 99/204 (48.53%), Query Frame = 0
Query: 21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQ----FEDEEQHRLRNERRQQRLKA 220
++V + K+ N GTL R + AFG + L LVG R F+ GS GS +L R F S R F ++ + GV ++ V+ PF+ ST F+ G+ L+ +++Q C F V++ G G +L+ VA SIVLHHF W+ + G K+V G+ R V Q + E + + ER+ +R A
Sbjct: 6 YVVVHNIAKRHNVGTLARSATAFGVSELILVG--RRDFNCFGSHGSSSHLRFRHFHSLHDARDFLKDKGCDICGVEITN--DALPVNHHPFKKSTAFLLGNEGQGLSPKEIQICDFFVYIPQYGA-----------GTASLNVTVAASIVLHHFAVWAGFEERSRDGSKFVVGE-RPVKQGRRNYCTEAKDSIIEERKARRESA 193
BLAST of EWM28734.1 vs. NCBI_GenBank
Match: gi|568872098|ref|XP_006489210.1| (PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Citrus sinensis]) HSP 1 Score: 88.9669 bits (219), Expect = 8.242e-18 Identity = 65/203 (32.02%), Postives = 98/203 (48.28%), Query Frame = 0
Query: 21 FMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQ--ARKVGQ-FEDEEQHRLRNERRQQRLKA 220
++V + K+ N GTL R + AFG + + LVG R F+ GS GS ++ R F S R F ++ + GV + V+ PF+ ST F+ G L+ ++ + C F V++ GG G +L+ VA SIVLHHF W+ ++ G KYV + AR+V Q F E+ + RR +R A
Sbjct: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVG--RRDFNAFGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVEITD--NAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGG-----------GTASLNVTVAASIVLHHFGVWAGFSERTRDGNKYVVAERSARQVRQSFCAEKPESIIEMRRSRRENA 192 The following BLAST results are available for this feature:
BLAST of EWM28734.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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