rna1980, rna1980 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1980
Unique Name	rna1980
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1821
Alignment location	CM002458.1:616063..618505 -

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Properties


Property Name	Value
Product	phenylalanyl-trna synthetase
Orig transcript id	gnl\|cribi\|Naga_100002g38.4799.mrna
Orig protein id	gnl\|cribi\|Naga_100002g38.4799
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:616063..618505 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g38	gene1891	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28680.1	cds1975	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1980	rna1980-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:616063..618505-
coding sequence from alignment at CM002458.1:616063..618505-

mRNA sequence

>rna1980 ID=rna1980|Name=rna1980|organism=Nannochloropsis gaditana|type=mRNA|length=1821bp
AAAGTGGCTGCATCAGATCGGGAGATCACATTTTTTTTACCGCTTCTCAT
CGCCGACAAGTAAGAGAAGACGGATTATGGCTCGTATGCGAGCACGGTAT
AATCGACCCTGCTCTTCCCACGTTAATGAGAAGTGTTTCATCCATTCTCT
CCTTTATGTTTACATTTTGCATTTTAAAATAGTTTTGTTATATTAGGGAG
GCCAGAGGCCTCTTTTTGCGTCAAGTCTGAAGGCACTTTTTGCGGGACCC
GCGATGTTCAGAGAGGGCGGTTCTTTGAAGCTTCCCCCACGTACAGCTTT
GGTTTCAGCAACAGCGAAGGCTCAGGTGCCCAGAAAACATCTCGATTCGA
ATCAGGATCAAAGATTGATGGCATATACGGGCGAACCTACCTCTACGTCC
GCGCAGAAGCTTGGTAGCGCACTATTTTTTGCCCTTACCTCCTTCTCAAT
TATCTTTGTCAACAAAGCTTTGCTAGCTTCTCCTGCGCATGGTTTCTTGG
GATTCCCATCATTTTTTGCTGTCGCTGCATGTCAATACGTCTTCACGGGA
GGACTTTTATTGGCGTTGAAATTGCGCGGTCGTGTGGATATTCCGGAACT
CTCCTCGAACGTGCTGCGGTGCCTGTGGCCACTAGCCTTGGTCGGCTCAT
TAAATGTTCTTTGCGGCCTAGGCGGTACACAAAAGATTTCTCTGCCCATG
TTTACTGTGCTACGACGCTTCTCTATACCCATGACAATGGGCCTAGAATG
GCTTTTATTAGGCGTAGCCGCTTCGAGGTCTGTGCAATTTAGCGTATTTT
TGATGGTGTTTGGCGCTGTTTTGGCGGGTCTCGCTGACATGTCTTTTGAT
CCTGTGGGCTACCTGTTCATTTTCGGTAATAATATTTTTACGGCCTTAAA
TGGAGTGATCATGAAGCGGACTTTGACATCCTCTAATATCAGCAAAATGG
CTGTGTTGTACTACAATAGCCTTTTCGGAGCTGTTTTCATGACTACTCTA
CTCTTCTGTCGTCCGAGGGAGCTGCAAGCAATCAAGAATTTCCCCTCTTT
GAAAGATCCCACATTTCTGATTGTCTTCTTTCTCGCAGCAGGGACGGGCT
CATTATTGAACTATGCCACATTCCTCTGCACGCATCACAATAGCGCCCTC
ACCACTACCGTCGTGGGTTGCCTCAAGAACCTTGCCACAACATACTTTTC
AATGTTCTTCCTCCCGGACTACGTCTTTAGCTGGAGCAATTTTTGGGGCG
TCACCGTATCTGTGGCGGGTAGTGTGATATATTCATACATTGAACTCGTG
AAGCAAGAAAAAAATGCACGTAGCAAGGCCTCCGACAGCAGCGTCAGCGG
TATTTCAAGCGAAAATAGAGGCAGTAAGAAAGTCTCCCAAGACGAGAAAA
GCGATTGCAAGCTTGCCGAAAGCCCAGTGATGGCATTCAAAAGCATGGAT
TTTCGCATCGAAAATACTTGTCACAGTAAAGATAAAGCCTCATGATATTT
TAAAAAAAGAGCTTGCACGACGAGAGCTGCTGATGAAGCCCCCGTAAAAC
TGATCGCTCTTCCCTGCAATGCAAATTTGATGCTTCTTCGACTTACGTGA
GACTTGCCTGCTGCCCTGCATGAGCTCGCTTCCAACCCCGGCATGTCCCC
GCTGACCATCTCTCAGACCTGACGAGGGCCACGATGCCAAACTAAGGAGC
GGACAATACTGGCCACAGCCAATAGCCGCTCCTGATGATGGGGACTGCAT
GTCACCGCCGTTTTACCGTAACTCGACTTTCAACGCATCTGACATTTGAG
TGCGAACCTCCTCCTGTAAGA

protein sequence of rna1980

>rna1980-protein ID=rna1980-protein|Name=rna1980|organism=Nannochloropsis gaditana|type=polypeptide|length=439bp
MKAMAPILLACCMSGASAAAAADGFMTRCTRAFVWPMAPKMTSFAARRTF
CTRHALISAASTVAEGKALDGRVHTEHPMNNVPVTLSGKIGRDLHRNPSH
PLGIIKDRIEGYFKERAATTGVAVECFDNLFPVVPIVNNFDDLLIPPDHV
SRSPIDTYYVDDKQVLRTHTSAHQSTMLGKGLEAFLVTGDVYRRDEIDRT
HYPVFHQMEGVRIFPGLLESRGSREEGVKEVEKDLKEALEGMVVTLFGDV
ERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRRAGKGETLG
WAFGLGLERLAMVLFQIPDIRLFWSTDERFTKQFEAGKITTFAPFSKYPP
CYKDVSFWIDKVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRAS
KCFRVNYRSMERSLTNEEIDVLQEEVRTQMSDALKVELR

mRNA from alignment at CM002458.1:616063..618505-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1980 ID=rna1980|Name=rna1980|organism=Nannochloropsis gaditana|type=mRNA|length=2443bp|location=Sequence derived from alignment at CM002458.1:616063..618505- (Nannochloropsis gaditana)
ACCTGCGTGAACCATACAAAGTACAGTGACGCACAGAGTGGCTTATCTTT
AAGTACGTCGCACTGCCGGAATGCTGTGTTGATCATTCATTTTCCTCTTC
TCTTACGTCTCTCAATCCGGCCGAAGTCAGACCCCGGGAAATGAAGGCCA
TGGCTCCAATACTACTCGCATGCTGCATGTCTGGGGCTAGCGCTGCCGCT
GCAGCTGACGGCTTCATGACCCGTTGTACCCGTGCCTTTGTTTGGCCAAT
GGCTCCCAAAATGACGTCGTTCGCGGCTCGTCGTACATTTTGTACAAGAC
ATGCCCTGATATCGGCGGCTTCGACTGTAGCTGAAGGCAAAGCACTTGAT
GGACGTGTGCACACGGAGCATCCAATGAACAATGTGCCCGTAACCCTTTC
CGGAAAAATTGGTCGGGACTTGCATCGGAACCCTAGCCATCCTCTAGGTA
TCATCAAGGACCGCATCGAGGGATACTTTAAAGAGCGCGCCGCCACCACG
GGCGTGGCGGTGGAGTGCTTCGACAACCTTTTTCCCGTCGTCCCGATCGT
CAATAATTTTGACGATTTGCTGATTCCGCCTGACCACGTATCTCGGTCAC
CCATAGATACCTACTATGTGGATGACAAGCAAGTGCTCCGCACGCACACG
AGCGCGCATCAAAGTACCATGCTGGGAAAGGGGTTGGAGGCTTTCCTAGT
CACAGGAGACGTTTATCGACGCGACGAGATTGACAGGACACATTATCCTG
TTTTCCATCAGATGGAGGGCGTGCGGATCTTCCCAGGTCTGCTTGAAAGC
CGCGGGAGTCGGGAGGAGGGGGTGAAGGAAGTGGAGAAGGACCTAAAGGA
GGCCTTGGAGGGGATGGTGGTGACGCTCTTTGGCGATGTTGAGCGGCGAT
GGGTGGACACGTATTTTCCTTTTACAGACCCCTCGTTTGAGCTTGAGATC
TTCTACAACGACGAGTGGTTGGAGGTTTTAGGCTGTGGAGTGATGCAGCA
AGAAATCGTCCGACGAGCGGGGAAGGGAGAGACGCTGGGATGGGCCTTTG
GGCTGGGGTTGGAGCGTCTGGCCATGGTTTTGTTCCAAATTCCTGATATC
CGACTGTTCTGGTCGACAGATGAACGCTTCACTAAACAGTTCGAGGCGGG
AAAGATCACTACATTCGCTCCTTTCAGCAAGTATCCTCCCTGCTATAAAG
ACGTGTCTTTTTGGATAGATAAGGTGGCAGGATTCAACAACAATGATTTT
TTTGAGATCGTCAGGGGAGTGGGCGGAGATTTGGTCGAGTCCGTTGTGCT
AGTGGATGAGTTCGTGCATCCGAAAACGGGGCGGGCGAGCAAATGCTTTA
GGGTCAACTACCGGTCGATGGAGCGCTCTTTGACGAACGAGGAGATAGAT
GTCTTACAGGAGGAGGTTCGCACTCAAATGTCAGATGCGTTGAAAGTCGA
GTTACGGTAAAACGGCGGTGACATGCAGTCCCCATCATCAGGAGCGGCTA
TTGGCTGTGGCCAGTATTGTCCGCTCCTTAGTTTGGCATCGTGGCCCTCG
TCAGGTCTGAGAGATGGTCAGCGGGGACATGCCGGGGTTGGAAGCGAGCT
CATGCAGGGCAGCAGGCAAGTCTCACGTAAGTCGAAGAAGCATCAAATTT
GCATTGCAGGGAAGAGCGATCAGTTTTACGGGGGCTTCATCAGCAGCTCT
CGTCGTGCAAGCTCTTTTTTTAAAATATCATGAGGCTTTATCTTTACTGT
GACAAGTATTTTCGATGCGAAAATCCATGCTTTTGAATGCCATCACTGGG
CTTTCGGCAAGCTTGCAATCGCTTTTCTCGTCTTGGGAGACTTTCTTACT
GCCTCTATTTTCGCTTGAAATACCGCTGACGCTGCTGTCGGAGGCCTTGC
TACGTGCATTTTTTTCTTGCTTCACGAGTTCAATGTATGAATATATCACA
CTACCCGCCACAGATACGGTGACGCCCCAAAAATTGCTCCAGCTAAAGAC
GTAGTCCGGGAGGAAGAACATTGAAAAGTATGTTGTGGCTACAACAAAAA
TGGGAGTGCGACGGTAAATTGATTGGAAAGAGGTAATAAGACAGGTGTTT
ATGACAGTATAGCACTAGGTCGGCGGGTATAGTCAAGGTTTCAAATACAA
AAGCACTGACCAAGGTTCTTGAGGCAACCCACGACGGTAGTGGTGAGGGC
GCTATTGTGATGCGTGCAGAGGAATGTGGCATAGTTCAATAATGAGCCCG
TCCCTGCTGCGAGAAAGAAGACAATCAGAAATGTGGGATCTTTCAAAGAG
GGGAAATTCTTGATTGCTTGCAGCTCCCTCGGACGACAGAAGAGTAGAGT
AGTCATGAAAACAGCTCTGTACGTGGCGAAATGGAAAGTTATTGAATTGT
AAAGAGATAAGAGGACAATTTTATTGAAGTTCAAATATAAACG

Coding sequence (CDS) from alignment at CM002458.1:616063..618505-

>rna1980 ID=rna1980|Name=rna1980|organism=Nannochloropsis gaditana|type=CDS|length=1320bp|location=Sequence derived from alignment at CM002458.1:616063..618505- (Nannochloropsis gaditana)
ATGAAGGCCATGGCTCCAATACTACTCGCATGCTGCATGTCTGGGGCTAG
CGCTGCCGCTGCAGCTGACGGCTTCATGACCCGTTGTACCCGTGCCTTTG
TTTGGCCAATGGCTCCCAAAATGACGTCGTTCGCGGCTCGTCGTACATTT
TGTACAAGACATGCCCTGATATCGGCGGCTTCGACTGTAGCTGAAGGCAA
AGCACTTGATGGACGTGTGCACACGGAGCATCCAATGAACAATGTGCCCG
TAACCCTTTCCGGAAAAATTGGTCGGGACTTGCATCGGAACCCTAGCCAT
CCTCTAGGTATCATCAAGGACCGCATCGAGGGATACTTTAAAGAGCGCGC
CGCCACCACGGGCGTGGCGGTGGAGTGCTTCGACAACCTTTTTCCCGTCG
TCCCGATCGTCAATAATTTTGACGATTTGCTGATTCCGCCTGACCACGTA
TCTCGGTCACCCATAGATACCTACTATGTGGATGACAAGCAAGTGCTCCG
CACGCACACGAGCGCGCATCAAAGTACCATGCTGGGAAAGGGGTTGGAGG
CTTTCCTAGTCACAGGAGACGTTTATCGACGCGACGAGATTGACAGGACA
CATTATCCTGTTTTCCATCAGATGGAGGGCGTGCGGATCTTCCCAGGTCT
GCTTGAAAGCCGCGGGAGTCGGGAGGAGGGGGTGAAGGAAGTGGAGAAGG
ACCTAAAGGAGGCCTTGGAGGGGATGGTGGTGACGCTCTTTGGCGATGTT
GAGCGGCGATGGGTGGACACGTATTTTCCTTTTACAGACCCCTCGTTTGA
GCTTGAGATCTTCTACAACGACGAGTGGTTGGAGGTTTTAGGCTGTGGAG
TGATGCAGCAAGAAATCGTCCGACGAGCGGGGAAGGGAGAGACGCTGGGA
TGGGCCTTTGGGCTGGGGTTGGAGCGTCTGGCCATGGTTTTGTTCCAAAT
TCCTGATATCCGACTGTTCTGGTCGACAGATGAACGCTTCACTAAACAGT
TCGAGGCGGGAAAGATCACTACATTCGCTCCTTTCAGCAAGTATCCTCCC
TGCTATAAAGACGTGTCTTTTTGGATAGATAAGGTGGCAGGATTCAACAA
CAATGATTTTTTTGAGATCGTCAGGGGAGTGGGCGGAGATTTGGTCGAGT
CCGTTGTGCTAGTGGATGAGTTCGTGCATCCGAAAACGGGGCGGGCGAGC
AAATGCTTTAGGGTCAACTACCGGTCGATGGAGCGCTCTTTGACGAACGA
GGAGATAGATGTCTTACAGGAGGAGGTTCGCACTCAAATGTCAGATGCGT
TGAAAGTCGAGTTACGGTAA

Synonyms

Publications