rna1973, rna1973 (mRNA) Nannochloropsis gaditana

Overview
Namerna1973
Unique Namerna1973
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1879
Alignment locationCM002458.1:602479..603303 -

Link to JBrowse

Properties
Property NameValue
Productdolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1
Orig transcript idgnl|cribi|Naga_100002g45.4906.mrna
Orig protein idgnl|cribi|Naga_100002g45.4906
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:602479..603303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g45gene1884Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1973rna1973-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28787.1cds1968Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1973 ID=rna1973|Name=rna1973|organism=Nannochloropsis gaditana|type=mRNA|length=1879bp
TGCATAGCAAGAATGAGAGCCGTCTGGGAGGAAGCGCGGAAGAGCACCGT
GATGCCGCCCTACCTTGCCCTACTAAGACTGCCCCCAGCCCGCCGCCCTC
GCTCATTGTCCACGTGTGACACTCTGCATGGGATGCCTTGAAACTGACAA
GTGCGCCGACCACTCCCCCTACACTCCATGGTTAGATGAGAAGTAACAAA
TCATGCAAGACTTGTCCTAATCGACTTCATGTAGGAATCGCAATCCTTTT
TCCGCTACTCCTGAGTGCTTTCTGTTTCTGCCACTTTTTAATGCTTCCAC
CTGCCATCGCGTTGCTGATTATGCCATATGCACCTGTGAGACGGGTATTG
AGACTATGGGAGGCAACGATAGCTGCTTATTGGTTATCCTTCGGAGCATG
GCTTCTTGAAAATCTTGGGGGGGTAAAGTTGATCATTTCAGGCGACACCT
TCACGAAGAAGGACAACGTTCTTATTATTTGTAATCATCGGACACGGCTA
GACTGGATGTGGCTCTGGTCGTGGGCTGCATATTTCGATGTGCTGTCTTC
CTATCGCGTAATACTTAAGGACTCTTTGCGCTGCTTCCCGTGGTGGGGTT
GGGGCATGTCATTATGCTTATTCCCTTTTATCCGCCGCGGCCAAAAACAC
CGTTCTACTGACTTAGCCCATTTAAAACGAAACTGCCGCTATTTAATCCA
ACTTAAGGTATCAAACTCGCTAATAATATTTCCCGAGGGCACAGACCTCT
CCCCCTCCAATCAAGAGCGGGATCGTAATTATGCCCTTTCTCGTAATTTG
TCTGCCTATAGGTACGTGTTGCATCCCCGCACAGGTGCCTTCCTCACGTG
CCTGGAAATATTACGTCCGCATGTGGATGCGGTGATAGACTTGACAATAG
GCTATGTCGATTATGAGCCCGGAGAGCGCCCTTCGGAGATCTCGCTCCTC
CTCGGCCGGCTGCCGCGTGAGATACACGTCAATCTAAAGCGGTGGGACCT
GGTCCTAACACCGCTCTTGTGTCGTGATAATATTGAAGATGCCAAAAAAT
TTCTTCAACTGTCTTTTGACCGCAAAGAGGCGTTGCTGACCTCATTCTAT
AATCGCGGCAAACTCCGATTTGACCTGGATGCGGTGGGCTCCACGTCCTC
ACGCTCGTCCTCAGAGACCTCCCCTGATCCGATTTCTCAGCTCAATGCTC
CTCGCTCGGGTTACGGCGACGATGACGCATTAGCGAATGAGCGGAGTCAG
AGCAGGTATCAGAGGTTACTCCGGAAGGGGCTTGTCGTGGCGGTTGCTGC
AGTTACAACAGTTGTGTTGATGGCATACGTCCTTCCTACAGTTTTTTTTT
GGGGATATATCGTCGCGACTTGTTTGTTGTGCATCCTAGTCACTGTATCT
TGTGAGGGATTTGACTCGCTGGAGCTGAACCTGCCGGTGCGGGGGGGCGA
CATACGTGTCCGGCGACTTCATAAAGAACATTGAGGTGTGGACAAGCGCG
TTGCACTCAAGCAAGAGGGTCAGGAGCGGGTGATAAAGGAGAAAAGAAAA
GGAAGACGCAACGGATTGTACTCATGCTCCAACCTATAAATTTACTGGTT
CAGAGCCCTGGACGACATGTTGAACGCGCGAAAGAACAAATTTTTAAATA
AAGCTGGCGTAGAACCGTAAAATCATCAAAAAGAGTGTGAGCGAAAGCAT
CTTCATGCATAGTTTTCAATGATAAGAGACATTATTTATAAGAAAAAAAA
TGCTCTAGATCGCCAGCTCATACGCCTCATCCAATGAAATTGAAGACGAC
GAAGAAGAGCAAAAGGCAGCAAAACGTGTACTCTCCGAATGCCTTCTCGA
CATTCTTTTCAGACGACAGCTGAAGCCTC
back to top

protein sequence of rna1973

>rna1973-protein ID=rna1973-protein|Name=rna1973|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MTPAASALDIRGVGKSLLAEYRKAANTQTKIVDLFLAFIVATGVLQFLYC
ALVGTFPFNSFLSGFFSCVGMFALTVSLRLQLSSEKNVEKAFGEYTFCCL
LLFFVVFNFIG
back to top

mRNA from alignment at CM002458.1:602479..603303-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1973 ID=rna1973|Name=rna1973|organism=Nannochloropsis gaditana|type=mRNA|length=825bp|location=Sequence derived from alignment at CM002458.1:602479..603303- (Nannochloropsis gaditana)
ACATCTACTCCCTGTAGAACCAGCCAGTGATTGATATCTCACTAGTCTCG
CTGGACATGACTCCTGCCGCGTCAGCTTTGGACATCAGGGGCGTTGGCAA
GAGTCTGCTCGCGGAGTACAGAAAGGCAGCCAACACACAAACCAAAATTG
TGGACCTTTTCCTGGCCTTCATAGTGGCGACTGGCGTGCTCCAATTTCTG
TATTGTGCACTTGTGGGTACCTTCCCCTTCAACTCTTTCCTCTCTGGATT
CTTCAGCTGCGTCGGTATGTTCGCCTTGACCGGTAAGTAGGGGGAGGCAA
AGCGGTGTAGAAGGCTCTCGTATCTCGCTACTCCCTGACTCGGCGGATAT
CGACAAGCGAAGTCCTCATGGGGCTATTCACGTGCAAAGGGGGAGATTCT
GACATAACCACCATAAGCGATCATTTTGCCCATGTGATACAACTGAACTG
TCTCAGTTCAATGTCCGCAAAATATGAAACTCATGCGCTCATCCACGCAT
TATCCAACATGCATAGTTTCCTTGAGGCTTCAGCTGTCGTCTGAAAAGAA
TGTCGAGAAGGCATTCGGAGAGTACACGTTTTGCTGCCTTTTGCTCTTCT
TCGTCGTCTTCAATTTCATTGGATGAGGCGTATGAGCTGGCGATCTAGAG
CATTTTTTTTCTTATAAATAATGTCTCTTATCATTGAAAACTATGCATGA
AGATGCTTTCGCTCACACTCTTTTTGATGATTTTACGGTTCTACGCCAGC
TTTATTTAAAAATTTGTTCTTTCGCGCGTTCAACATGTCGTCCAGGGCTC
TGAACCAGTAAATTTATAGGTTGGA
back to top

Coding sequence (CDS) from alignment at CM002458.1:602479..603303-

>rna1973 ID=rna1973|Name=rna1973|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at CM002458.1:602479..603303- (Nannochloropsis gaditana)
TTTCCTTGAGGCTTCAGCTGTCGTCTGAAAAGAATGTCGAGAAGGCATTC
GGAGAGTACACGTTTTGCTGCCTTTTGCTCTTCTTCGTCGTCTTCAATTT
CATTGGATGAATGACTCCTGCCGCGTCAGCTTTGGACATCAGGGGCGTTG
GCAAGAGTCTGCTCGCGGAGTACAGAAAGGCAGCCAACACACAAACCAAA
ATTGTGGACCTTTTCCTGGCCTTCATAGTGGCGACTGGCGTGCTCCAATT
TCTGTATTGTGCACTTGTGGGTACCTTCCCCTTCAACTCTTTCCTCTCTG
GATTCTTCAGCTGCGTCGGTATGTTCGCCTTGACCGTTTCCTTGAGGCTT
CAGCTGTCGTCTGAAAAGAATGTCGAGAAGGCATTCGGAGAGTACACGTT
TTGCTGCCTTTTGCTCTTCTTCGTCGTCTTCAATTTCATTGGATGAATGA
CTCCTGCCGCGTCAGCTTTGGACATCAGGGGCGTTGGCAAGAGTCTGCTC
GCGGAGTACAGAAAGGCAGCCAACACACAAACCAAAATTGTGGACCTTTT
CCTGGCCTTCATAGTGGCGACTGGCGTGCTCCAATTTCTGTATTGTGCAC
TTGTGGGTACCTTCCCCTTCAACTCTTTCCTCTCTGGATTCTTCAGCTGC
GTCGGTATGTTCGCCTTGACCG
back to top
Synonyms
Publications